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West Bengal Universityof Animal and Fishery Sciences
Faculty of Fishery Sciences
A Seminar On: AQUATIC MICROORGANISMS AND THEIR ROLE IN
NITROGEN CYCLE
Submitted to:
PROF. T.K. GHOSH
Dept. of AQC
Submitted by :
ARITRIYA JANA
Roll- M/F/2020/05
Year : 2020-2021
Introduction
• Nitrogen is found to have either 3 or 5 valance electron.
• Lies at the top of group 15 on periodic table
• Molecular nitrogen is not reactive at standard temperature and pressure.
• Nitrogen is a non metal,colourless,odorless.
• Largest source of nitrogen is in the atmosphere.
• Nitrogen makes up 78% of our air.
• It is an essential component.
• Discovered by Scottish physician Daniel Rutherford in 1772.
Importance of nitrogen
Importance in plant
Nitrogen is actually considered the
most important component for
supporting plant growth. Nitrogen is
part of the chlorophyll molecule,
which gives plants their green color
and is involved in creating food for
the plant through photosynthesis.
Lack of nitrogen shows up as general
yellowing (chlorosis) of the plant.
Importance in
human body
It is used to make amino
acids in our body which in
turn make proteins. It is
also needed to make
nucleic acids, which form
DNA and RNA. Human or
other species on earth
require nitrogen in a 'fixed'
reactive form.
Use in daily life
• Pharmaceuticals
Industry.
• Electronics
Manufacturing.
• Stainless Steel Manuf
acturing.
• Preservation of food
Nitrogen cycle
Cont…
There are four key stages of the nitrogen cycle:
Nitrogen fixation
Ammonification
Nitrification
Denitrification
Microorganisms play a key role in the nitrogen
cycle.
. Prokaryotes play several roles in the nitrogen cycle. Nitrogen-
fixing bacteria in the soil and within the root nodules of some
plants convert nitrogen gas in the atmosphere to ammonia.
Nitrifying bacteria convert ammonia to nitrites or nitrates. ...
Denitrifying bacteria converts nitrates back to nitrogen gas.
 Roles of microbes in nitrogen fixation
• There are three ways that nitrogen gets fixed
Atmospheric fixation
Industrial fixation
Biological fixation
Cont……
Nitrogen fixation is the process by which atmospheric nitrogen is converted by either a natural or an industrial means to a form
of nitrogen such as ammonia. In nature, most nitrogen is harvested from the atmosphere by microorganisms to form ammonia,
nitrites, and nitrates that can be used by plants
Nitrogen fixing organisms are called diazotrophs
There are two types of biological nitrogen fixation
Two kinds of nitrogen-fixing bacteria are known: free-living or non-symbiotic bacteria, including the cyanobacteria (or blue-
green algae) Anabaena and Nostoc and genera such as Azotobacter,Beijerinckia, and Clostridium; and mutualistic or
symbiotic bacteria such as Rhizobium, associated with leguminous plants (e.g., various members of the pea family), and
certain Azospirillum species, associated with cereal grasses.
Symbiotic nitrogen fixation
Non symbiotic/free living nitrogen fixation.
 Nitrogen Fixation by Free-Living Bacteria
There are many heterotrophic bacteria which reside in ground soil and are able for fixation of significant
levels of nitrogen without the direct interaction with other beings. Examples for this type of nitrogen-fixing
bacteria include species of Azotobacter, Bacillus, Clostridium, and Klebsiella.
• These organisms search their own source of energy either by oxidation of organic molecules released by
other organisms or from decomposition.
• Some free-living organisms have chemolithotrophic capabilities which help them to utilize inorganic
compounds as a source of energy. Their contribution to global nitrogen fixation rates is supposed to be less
than generally observed due to the lack of suitable carbon and energy sources for these microorganisms.
Azotobacter Bacillus Clostridium
 Symbiotic Nitrogen Fixation
Many microorganisms fix nitrogen symbiotically by partnering with a host plant. Sugars are produced by plants
via photosynthesis that are utilized by the nitrogen-fixing microorganism for the energy it required for nitrogen
fixing. In exchange for these carbon sources, the microbe provides fixed nitrogen to the host plant for its
growth.
• Water fern Azolla’s which symbiosis with a cyanobacterium Anabaena azollae is a type of example for this
type of nitrogen fixation. Even though the symbiotic partners described above play a vital role in the
worldwide ecology of nitrogen fixation.
• till date relationships between legumes and Rhizobium and Bradyrhizobium bacteria are considered to be
the most important nitrogen-fixing symbiotic associations.
Rhizobium Bradyrhizobium
 Examples of bacterial species, which are
able to fix atmospheric N2 …
Bacterial strain References
Azotobacter chroococcum Mrkovacki and Milic, 2001; Shabaev et al., 1991;
Kennedy et al., 1997
Pantoea agglomerans Feng et al., 2006
Klebsiella spp.
Klebsiella pneumoniae
Balandreau, 1983; Wright and Weaver, 1981
Cellulomonas sp Egamberdiyeva and Hoflich, 2002
Bacillus azotoformans
B. mycoides
B. cereus
B. thuringiensis
Li et al., 1992; Rozycki et al.,1999
 Rates of nitrogen fixation
Nitrogen fixing system Nitrogen fixation rate (N/ha/year)
Rhizobium-legume 200-300
Cyanobacteria-moss 30-40
Rhizosphere association 2-25
Free living 1-2
 Ammonification
 Roles of microbes in ammonification…
What is ammonification!
When an organism excretes
waste or dies, the nitrogen in its
tissues is in the form of
organic nitrogen (e.g. amino
acids, DNA). Various fungi and
prokaryotes then decompose the
tissue and release
inorganic nitrogen back into the
ecosystem as ammonia in the
process known
as ammonification.
Mineralization of N and immobilization by
microorganisms are one of the key
components of the N cycle and are both
considered important processes (Janssen,
1996). The organic nitrogenous compounds
are decomposed by microbial enzymes to
form
ammonia (NH3) and thus the amount of plant
available N is increased through those
processes.
Cont…
The ammonifying microorganisms include
species such as Bacillus, Pseudomonas,
Microbacterium, Streptomyces
(Govedarica, 1995;
Wirth and Egamberdieva, 2008). The
mycorrhizae are also important in acting
directly as
decomposers by producing the
exoenzymes that break down organic
polymers in low soil N
environments (Schimmel and Bennett,
2004)
Streptomyces
Pseudomonas
 Roles of microorganisms in nitrification
• The conversion of ammonium to nitrite is performed mainly by nitrifying bacteria.
• In the primary stage of nitrification the oxidation of ammonium to nitrate is
performed by Nitrosomonas sps. Which converts ammonia to nitrite.
• Other bacterial species such as Nitrobacter are responsible for the oxidation of
the nitrites to nitrates.
• Ammonia gas is toxic to plants.
a)2NH3 + ½ 02----------- N02+2H+H2O
Ammonia Nitrite
b) NO2+1/2O2 ----------- NO3
Nitrite Nitrate
 Characteristic of nitrifying bacteria.
Genus Phylogenetic group DNA (mol% GC) Habitats Characteristics
Nitrosomonas
Beta 45-53
Soil, Sewage, freshwater,
Marine
Gram-negative short to long
rods, motile (polar flagella)or
nonmotile; peripheral
membrane systems
Nitrosococcus Gamma 49-50 Freshwater, Marine
Large cocci, motile, vesicular
or peripheral membranes
Nitrosospira Beta 54 Soil
Spirals, motile (peritrichous
flagella); no obvious
membrane system
Genus Phylogenetic group DNA (mol% GC) Habitats Characteristics
Nitrobacter Alpha 59-62 Soil, Freshwater, Marine
Short rods, reproduce by
budding, occasionally motile
(single subterminal flagella)
or non-motile; membrane
system arranged as a polar
cap
Nitrospina Delta 58 Marine
Long, slender rods,
nonmotile, no obvious
membrane system
Nitrifying bacteria that oxidize nitrite
Nitrifying bacteria that oxidize ammonia
Cont…
Nitrosomonas
Nitrobacter
 Roles of microbes in denitrification
What is denitrification!
Denitrification is the microbial process of
reducing nitrate and nitrite to gaseous forms of
nitrogen, principally nitrous oxide (N2O) and
nitrogen (N2). A large range of microorganims
can denitrify. Denitrification is a response to
changes in the oxygen (O2) concentration of
their immediate environment.
Diversity of denitrifying bacteria
There is a great diversity in biological traits. Denitrifying bacteria
have been identified in over 50 genera with over 125 different
species and are estimated to represent 10-15% of bacteria
population in water, soil and sediment.
Denitrifying include for example several species
of Pseudomonas, Alkaligenes , Bacillus and others.
 Denitrification mechanism
• Denitrifying bacteria use denitrification to generate ATP.
• The most common denitrification process is outlined below, with the nitrogen oxides being converted back to gaseous nitrogen:
• 2 NO3
− + 10 e− + 12 H+ → N2 + 6 H2O
• The result is one molecule of nitrogen and six molecules of water. Denitrifying bacteria are a part of the N cycle, and consists of sending the N back
into the atmosphere. The reaction above is the overall half reaction of the process of denitrification. The reaction can be further divided into different
half reactions each requiring a specific enzyme. The transformation from nitrate to nitrite is performed by nitrate reductase (Nar)
• NO3
− + 2 H+ + 2 e− → NO2
− + H2O
• Nitrite reductase (Nir) then converts nitrite into nitric oxide
• 2 NO2
− + 4 H+ + 2 e− → 2 NO + 2 H2O
• Nitric oxide reductase (Nor) then converts nitric oxide into nitrous oxide
• 2 NO + 2 H+ + 2 e− → N2O + H2O
• Nitrous oxide reductase (Nos) terminates the reaction by converting nitrous oxide into dinitrogen
• N2O + 2 H+ + 2 e− → N2 + H2O
• It is important to note that any of the products produced at any step can be exchanged with the soil environment.
 Impact of denitrifying bacteria in the environment
1.
•Role of denitrifying bacteria as a methane sink
•Denitrifying bacteria have been found to play a significant role in the oxidation of methane (CH4) (where methane is converted
to CO2, water, and energy) in deep freshwater bodies of water This is important because methane is the second most
significant anthropogenic greenhouse gas
2.
•Denitrification effects on limiting plant productivity and producing by-products
•The process of denitrification can lower the fertility of soil as nitrogen, a growth-limiting factor, is removed from the soil and
lost to the atmosphere.
3.
•Denitrifying bacteria use in wastewater treatment
•Denitrifying bacteria are an essential component in treating wastewater. Wastewater often contains large amounts of nitrogen
(in the form of ammonium or nitrate), which could be damaging to human health and ecological processes if left untreated.
 Marine nitrogen cycle…
 Conclusion
Nitrogen is a critical limiting element which is used for the growth and
production of plants. It is a major constituent of chlorophyll, the most
imperative pigment needed to carry out photosynthesis. Likewise it is a
vital component in amino acids, which are the key building units of
proteins. Besides this, it is also present in other vital biomolecules, such as
ATP and nucleic acids.
So nitrogen cycle is one of the impactful bio geo chemical cycle in this
environment and microorganisms which have the greatest role to
complete this process successfully,
 Reference
• Amberger, A. (1989). Research on dicyandiamide as a nitrification inhibitor
and future outlook. Commun. Soil science plant analysis, 20, 1933-1955.
• Andersch, I. and Anderson, J.P.E. (1991). Influence of pesticides on nitrogen
transformations in soil. Environmental Toxicology and Chemistry, 30, 153-
158.
• Aulakh, M.S, Khera, T.S. and Doran, J.W. (2000). Mineralization and
denitrification in upland, nearly-saturated and flooded subtropical soil. I.
Effect of nitrate and ammoniacal nitrogen. Biology and Fertility of Soils, 31,
162–167.
• Balandreau, J. (1983). Microbiology of the association. Canadian Journal of
Microbiology, 29, 851–859.
• Baldani, J.I. and Baldani, V.L.D. (2005). History of biological nitrogen fixation
research in graminaceous plants: special emphasis on the Brazilian
experience. Ann. Brazil Acad. Sci., 77, 549–579.
• Bhattacharjee, R.B., Singh, A. and Mukhopadhyay, S.N. (2008). Use of
nitrogen-fixing bacteria as biofertiliser for non-legumes: prospects and
challenges. Applied Microbiology and Biotechnology, 80, 199–209
Roles of microbes in nitrogen cycle aritriya

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Roles of microbes in nitrogen cycle aritriya

  • 1. West Bengal Universityof Animal and Fishery Sciences Faculty of Fishery Sciences A Seminar On: AQUATIC MICROORGANISMS AND THEIR ROLE IN NITROGEN CYCLE Submitted to: PROF. T.K. GHOSH Dept. of AQC Submitted by : ARITRIYA JANA Roll- M/F/2020/05 Year : 2020-2021
  • 2. Introduction • Nitrogen is found to have either 3 or 5 valance electron. • Lies at the top of group 15 on periodic table • Molecular nitrogen is not reactive at standard temperature and pressure. • Nitrogen is a non metal,colourless,odorless. • Largest source of nitrogen is in the atmosphere. • Nitrogen makes up 78% of our air. • It is an essential component. • Discovered by Scottish physician Daniel Rutherford in 1772.
  • 3.
  • 4. Importance of nitrogen Importance in plant Nitrogen is actually considered the most important component for supporting plant growth. Nitrogen is part of the chlorophyll molecule, which gives plants their green color and is involved in creating food for the plant through photosynthesis. Lack of nitrogen shows up as general yellowing (chlorosis) of the plant. Importance in human body It is used to make amino acids in our body which in turn make proteins. It is also needed to make nucleic acids, which form DNA and RNA. Human or other species on earth require nitrogen in a 'fixed' reactive form. Use in daily life • Pharmaceuticals Industry. • Electronics Manufacturing. • Stainless Steel Manuf acturing. • Preservation of food
  • 6. Cont… There are four key stages of the nitrogen cycle: Nitrogen fixation Ammonification Nitrification Denitrification
  • 7. Microorganisms play a key role in the nitrogen cycle. . Prokaryotes play several roles in the nitrogen cycle. Nitrogen- fixing bacteria in the soil and within the root nodules of some plants convert nitrogen gas in the atmosphere to ammonia. Nitrifying bacteria convert ammonia to nitrites or nitrates. ... Denitrifying bacteria converts nitrates back to nitrogen gas.
  • 8.  Roles of microbes in nitrogen fixation • There are three ways that nitrogen gets fixed Atmospheric fixation Industrial fixation Biological fixation
  • 9. Cont…… Nitrogen fixation is the process by which atmospheric nitrogen is converted by either a natural or an industrial means to a form of nitrogen such as ammonia. In nature, most nitrogen is harvested from the atmosphere by microorganisms to form ammonia, nitrites, and nitrates that can be used by plants Nitrogen fixing organisms are called diazotrophs There are two types of biological nitrogen fixation Two kinds of nitrogen-fixing bacteria are known: free-living or non-symbiotic bacteria, including the cyanobacteria (or blue- green algae) Anabaena and Nostoc and genera such as Azotobacter,Beijerinckia, and Clostridium; and mutualistic or symbiotic bacteria such as Rhizobium, associated with leguminous plants (e.g., various members of the pea family), and certain Azospirillum species, associated with cereal grasses. Symbiotic nitrogen fixation Non symbiotic/free living nitrogen fixation.
  • 10.  Nitrogen Fixation by Free-Living Bacteria There are many heterotrophic bacteria which reside in ground soil and are able for fixation of significant levels of nitrogen without the direct interaction with other beings. Examples for this type of nitrogen-fixing bacteria include species of Azotobacter, Bacillus, Clostridium, and Klebsiella. • These organisms search their own source of energy either by oxidation of organic molecules released by other organisms or from decomposition. • Some free-living organisms have chemolithotrophic capabilities which help them to utilize inorganic compounds as a source of energy. Their contribution to global nitrogen fixation rates is supposed to be less than generally observed due to the lack of suitable carbon and energy sources for these microorganisms. Azotobacter Bacillus Clostridium
  • 11.  Symbiotic Nitrogen Fixation Many microorganisms fix nitrogen symbiotically by partnering with a host plant. Sugars are produced by plants via photosynthesis that are utilized by the nitrogen-fixing microorganism for the energy it required for nitrogen fixing. In exchange for these carbon sources, the microbe provides fixed nitrogen to the host plant for its growth. • Water fern Azolla’s which symbiosis with a cyanobacterium Anabaena azollae is a type of example for this type of nitrogen fixation. Even though the symbiotic partners described above play a vital role in the worldwide ecology of nitrogen fixation. • till date relationships between legumes and Rhizobium and Bradyrhizobium bacteria are considered to be the most important nitrogen-fixing symbiotic associations. Rhizobium Bradyrhizobium
  • 12.  Examples of bacterial species, which are able to fix atmospheric N2 … Bacterial strain References Azotobacter chroococcum Mrkovacki and Milic, 2001; Shabaev et al., 1991; Kennedy et al., 1997 Pantoea agglomerans Feng et al., 2006 Klebsiella spp. Klebsiella pneumoniae Balandreau, 1983; Wright and Weaver, 1981 Cellulomonas sp Egamberdiyeva and Hoflich, 2002 Bacillus azotoformans B. mycoides B. cereus B. thuringiensis Li et al., 1992; Rozycki et al.,1999
  • 13.  Rates of nitrogen fixation Nitrogen fixing system Nitrogen fixation rate (N/ha/year) Rhizobium-legume 200-300 Cyanobacteria-moss 30-40 Rhizosphere association 2-25 Free living 1-2
  • 15.  Roles of microbes in ammonification… What is ammonification! When an organism excretes waste or dies, the nitrogen in its tissues is in the form of organic nitrogen (e.g. amino acids, DNA). Various fungi and prokaryotes then decompose the tissue and release inorganic nitrogen back into the ecosystem as ammonia in the process known as ammonification. Mineralization of N and immobilization by microorganisms are one of the key components of the N cycle and are both considered important processes (Janssen, 1996). The organic nitrogenous compounds are decomposed by microbial enzymes to form ammonia (NH3) and thus the amount of plant available N is increased through those processes.
  • 16. Cont… The ammonifying microorganisms include species such as Bacillus, Pseudomonas, Microbacterium, Streptomyces (Govedarica, 1995; Wirth and Egamberdieva, 2008). The mycorrhizae are also important in acting directly as decomposers by producing the exoenzymes that break down organic polymers in low soil N environments (Schimmel and Bennett, 2004) Streptomyces Pseudomonas
  • 17.  Roles of microorganisms in nitrification • The conversion of ammonium to nitrite is performed mainly by nitrifying bacteria. • In the primary stage of nitrification the oxidation of ammonium to nitrate is performed by Nitrosomonas sps. Which converts ammonia to nitrite. • Other bacterial species such as Nitrobacter are responsible for the oxidation of the nitrites to nitrates. • Ammonia gas is toxic to plants. a)2NH3 + ½ 02----------- N02+2H+H2O Ammonia Nitrite b) NO2+1/2O2 ----------- NO3 Nitrite Nitrate
  • 18.  Characteristic of nitrifying bacteria. Genus Phylogenetic group DNA (mol% GC) Habitats Characteristics Nitrosomonas Beta 45-53 Soil, Sewage, freshwater, Marine Gram-negative short to long rods, motile (polar flagella)or nonmotile; peripheral membrane systems Nitrosococcus Gamma 49-50 Freshwater, Marine Large cocci, motile, vesicular or peripheral membranes Nitrosospira Beta 54 Soil Spirals, motile (peritrichous flagella); no obvious membrane system Genus Phylogenetic group DNA (mol% GC) Habitats Characteristics Nitrobacter Alpha 59-62 Soil, Freshwater, Marine Short rods, reproduce by budding, occasionally motile (single subterminal flagella) or non-motile; membrane system arranged as a polar cap Nitrospina Delta 58 Marine Long, slender rods, nonmotile, no obvious membrane system Nitrifying bacteria that oxidize nitrite Nitrifying bacteria that oxidize ammonia
  • 20.  Roles of microbes in denitrification What is denitrification! Denitrification is the microbial process of reducing nitrate and nitrite to gaseous forms of nitrogen, principally nitrous oxide (N2O) and nitrogen (N2). A large range of microorganims can denitrify. Denitrification is a response to changes in the oxygen (O2) concentration of their immediate environment. Diversity of denitrifying bacteria There is a great diversity in biological traits. Denitrifying bacteria have been identified in over 50 genera with over 125 different species and are estimated to represent 10-15% of bacteria population in water, soil and sediment. Denitrifying include for example several species of Pseudomonas, Alkaligenes , Bacillus and others.
  • 21.  Denitrification mechanism • Denitrifying bacteria use denitrification to generate ATP. • The most common denitrification process is outlined below, with the nitrogen oxides being converted back to gaseous nitrogen: • 2 NO3 − + 10 e− + 12 H+ → N2 + 6 H2O • The result is one molecule of nitrogen and six molecules of water. Denitrifying bacteria are a part of the N cycle, and consists of sending the N back into the atmosphere. The reaction above is the overall half reaction of the process of denitrification. The reaction can be further divided into different half reactions each requiring a specific enzyme. The transformation from nitrate to nitrite is performed by nitrate reductase (Nar) • NO3 − + 2 H+ + 2 e− → NO2 − + H2O • Nitrite reductase (Nir) then converts nitrite into nitric oxide • 2 NO2 − + 4 H+ + 2 e− → 2 NO + 2 H2O • Nitric oxide reductase (Nor) then converts nitric oxide into nitrous oxide • 2 NO + 2 H+ + 2 e− → N2O + H2O • Nitrous oxide reductase (Nos) terminates the reaction by converting nitrous oxide into dinitrogen • N2O + 2 H+ + 2 e− → N2 + H2O • It is important to note that any of the products produced at any step can be exchanged with the soil environment.
  • 22.  Impact of denitrifying bacteria in the environment 1. •Role of denitrifying bacteria as a methane sink •Denitrifying bacteria have been found to play a significant role in the oxidation of methane (CH4) (where methane is converted to CO2, water, and energy) in deep freshwater bodies of water This is important because methane is the second most significant anthropogenic greenhouse gas 2. •Denitrification effects on limiting plant productivity and producing by-products •The process of denitrification can lower the fertility of soil as nitrogen, a growth-limiting factor, is removed from the soil and lost to the atmosphere. 3. •Denitrifying bacteria use in wastewater treatment •Denitrifying bacteria are an essential component in treating wastewater. Wastewater often contains large amounts of nitrogen (in the form of ammonium or nitrate), which could be damaging to human health and ecological processes if left untreated.
  • 24.  Conclusion Nitrogen is a critical limiting element which is used for the growth and production of plants. It is a major constituent of chlorophyll, the most imperative pigment needed to carry out photosynthesis. Likewise it is a vital component in amino acids, which are the key building units of proteins. Besides this, it is also present in other vital biomolecules, such as ATP and nucleic acids. So nitrogen cycle is one of the impactful bio geo chemical cycle in this environment and microorganisms which have the greatest role to complete this process successfully,
  • 25.  Reference • Amberger, A. (1989). Research on dicyandiamide as a nitrification inhibitor and future outlook. Commun. Soil science plant analysis, 20, 1933-1955. • Andersch, I. and Anderson, J.P.E. (1991). Influence of pesticides on nitrogen transformations in soil. Environmental Toxicology and Chemistry, 30, 153- 158. • Aulakh, M.S, Khera, T.S. and Doran, J.W. (2000). Mineralization and denitrification in upland, nearly-saturated and flooded subtropical soil. I. Effect of nitrate and ammoniacal nitrogen. Biology and Fertility of Soils, 31, 162–167. • Balandreau, J. (1983). Microbiology of the association. Canadian Journal of Microbiology, 29, 851–859. • Baldani, J.I. and Baldani, V.L.D. (2005). History of biological nitrogen fixation research in graminaceous plants: special emphasis on the Brazilian experience. Ann. Brazil Acad. Sci., 77, 549–579. • Bhattacharjee, R.B., Singh, A. and Mukhopadhyay, S.N. (2008). Use of nitrogen-fixing bacteria as biofertiliser for non-legumes: prospects and challenges. Applied Microbiology and Biotechnology, 80, 199–209