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J. Bio. Env. Sci. 18(5), 57-64, May 2021.
2021
E-ISSN: 2225-3610, p-ISSN: 2223-7054
Research article
By: Kate Jocel D. Barroga, Diana C. Castillo and Evaristo A. Abella
Journal of Biodiversity and
Environmental Sciences-JBES
international network for natural
sciences
Source: wikimapia.org
Research paper
Source: Wikipedia.org
Journal Name
Publisher Name
J. Bio. & Env. Sci. 2021
57 | Barroga et al.
RESEARCH PAPER OPEN ACCESS
Pharmacological activity of the methanolic extract of sea
urchins against Escherichia coli and Staphylococcus aureus
Kate Jocel D. Barroga1
, Diana C. Castillo*2,3
, Evaristo A. Abella2,3
1
Department of Biological Sciences, College of Science, Central Luzon State University, Science City
of Muñoz, Nueva Ecija, Philippines
2
Faculty, Department of Biological Sciences, College of Science, Central Luzon State University,
Science City of Muñoz, Nueva Ecija, Philippines
3
Biodiversity Conservation Laboratory, Interactive Laboratory, Department of Biological Sciences,
College of Science, Central Luzon State University, Science City of Muñoz, Nueva Ecija,
Philippines
Article published on May 30, 2021
Key words: Pharmacological test, Antibacterial, Antioxidant Echinothrix diadema, Echinometra mathaei,
Echinometra oblonga
Abstract
This study elucidated the pharmacological potential of sea urchins using methanol as extracting medium. The
antibacterial potential was evaluated using the paper disc method and zone of inhibition against Escherichia coli
and Staphylococcus aureus was measured. Antioxidant properties of sea urchins were evaluated using DPPH
radical scavenging assay. Three species of sea urchin randomly collected along the intertidal zone of Diguisit,
Baler Aurora were identified using diagnostic keys by the National Museum of the Philippines and they were
identified as follows; Echinothrix diadema, Echinometra mathaei, and Echinometra oblonga. E. diadema
recorded the highest diameter zone of inhibition against E. coli and S. aureus after 24 hours of incubation with
11.03 ± 1.75mm and 13.52 ± 1.13mm respectively while E. mathaei only inhibited S. aureus with zone of
inhibition of 9.27 ± 2.06mm in 24 hours of incubation as well. As the zone of inhibition prolongs, the zone of
inhibition decreases as observed in 48 hours of incubation. E. oblonga did not show inhibitoy effect, however it
recorded the highest radical scavenging activity with 64.46% among the three species of sea urchins. This was
followed by E. mathaei (51.52%) and E. diadema (37.38%). All collected species manifested antioxidant
potential. Based on the results, the collected species of sea urchins has a pharmacological potential.
*Corresponding Author: Diana C. Castillo  dccastillo@clsu.edu.ph
Journal of Biodiversity and Environmental Sciences (JBES)
ISSN: 2220-6663 (Print) 2222-3045 (Online)
Vol. 18, No. 5, p. 57-64, 2021
http://www.innspub.net
J. Bio. & Env. Sci. 2021
58 | Barroga et al.
Introduction
Marine invertebrates are excellent sources of
bioactive compounds with antibacterial and
antioxidant dynamics. Recent discovery on
pharmacological dynamics has stimulated the search
for natural agents or natural sources that will lead to a
desirable antibacterial and secondary metabolites
(Abubakar et al., 2012).
The diversity of marine organisms in our ecosystem,
secondary metabolites has been identified as one of
very important compound available produced in
marine organisms. Sea urchins are small, spiny,
globular animals belong to the class Echinoidea of the
echinoderm phylum (Shankarlal et al., 2011).
Additionally, sea urchins have orbicular bodies coated
with a strict shell and thoroughly covered with many
sharp spines (Amarowicz et al., 2012).
As stated in the study of Bich et al., (2004),
echinoderms have pharmacologically active
secondary metabolites. The antibacterial activity of
sea urchin is generally assayed through various
extracts with different solvents. Methanol extract of
Tripneustes gratilla showed highest antimicrobial
activity against Pseudomonas aeruginosa (Abubakar
et al., 2012). Also, methanol extract of Diadema
setosum exhibited higher zone of inhibition against
Salmonella typhimurium, Staphylococcus
epidermidis, Citrobacter freundii, and Klebsiella
pneumoniae (Rahman et al., 2015).
An investigation report of Bragadeeswaran et al.
(2013) on the bioactive compounds of sea urchin
Temnopleurus toreumaticus showed remarkable
hemolytic and cytotoxic activities. The spines of
purple sea urchin Strongylocentrotus nudus showed
excellent activity by using DPPH scavenging activity
indicating the presence of PHNQ as potential sources
of natural antioxidants (Zhou et al., 2011).
The present work focused on the screening of the
antibacterial and antioxidant activity of whole globular
body and tissues of Echinothrix diadema, Echinometra
mathaei, and Echinometra oblonga collected from the
intertidal zone of the coastal ecosystem of Barangay
Diguisit, Baler, Aurora, Philippines.
Materials and methods
Collection and Sample Preparation
Live specimens of sea urchins were randomly
collected along the intertidal zone of the coastal
ecosystem of Barangay Diguisit, Baler Aurora.
Collected sea urchins were placed in a styrofoam box
containing crushed ice and immediately brought to
the laboratory. After dissection, all tissues were
frozen in liquid nitrogen for 5 min and stored in
unilluminated condition at -70°C to avoid thermo-
degradation of secondary metabolites until extraction.
After removal of the internal organs, the shells (with
spines) were washed with a stream of cold-water
ground and stored at -40°C until used.
Specimen Identification
After taking digital photographs of the live specimen,
sea urchins were sent to the National Museum of the
Philippines for identification using diagnostic keys.
Methanolic Extraction of Echinoidea
The extraction procedure was adopted from Abubakar
et al. (2012) with some modifications. Twenty-one
grams of Echinothrix diadema, 31g of Echinometra
mathaei, and 17g of Echinometra oblonga were
homogenized and extracted with 10 volumes/1 gram
(v/w) of 70% (v/v) methanol for 48 hours. Sample
was filtered using Whatman filter paper No.1. The
filtrate was reduced at 55°C in a rotary evaporator.
The extract was stored in sterile vial and was stored in
4°C prior to use.
Screening of Antibacterial Activity
Test Organisms
E. coli (ATCC 2592; AN1964) and S. aureus (ATCC
6538; AN1823) were used as bacterial pathogens for
the pharmacological potential of sea urchin species.
Pathogens were obtained from the Philippine
National Collection of Microorganisms, University of
the Philippines, Los Baños, Laguna.
J. Bio. & Env. Sci. 2021
59 | Barroga et al.
Preparation of Inoculum
The method in the “Manual on Antimicrobial
Susceptibility Testing” by Lalitha (2004) was adopted
in the preparation of the inoculum. Three to five well-
isolated colonies of the same morphological type were
selected from an agar plate culture. After 24 hours of
incubation, the growth culture was transferred in
prepared nutrient agar slants and incubated for 18
hours. A loopful of bacteria was transferred into
10mL nutrient broth and incubated at 37°C for 6 to 8
hours.
Turbidity of the growing culture was adjusted with
sterile broth to obtain turbidity comparable to that of
0.5mc Farland standard. The comparison was done
visually against a white background and black lines
under adequate light condition.
Preparation of Assay Plates
Thirty-eight grams of Mueller Hinton Agar II was
dissolved and melted in one – liter distilled water and
sterilized in an autoclave at 121°C, 15psi for 30
minutes. It was cooled down enough to maintain the
liquid form and minimize moist inside the petri
plates. It was poured on the sterilized petri plates and
allowed to solidify.
Preparation of Paper Disc
Discs of Whatman no. 1 filter paper with a diameter of
6mm was cut out using an office punch and was
placed in a petri plate and sterilized in an autoclaved
at 121°C, 15 psi for 30 min.
Antibacterial Assay
Disc diffusion (Mokhlesi et al., 2011) was used to
study the pharmacological property of collected
species of sea urchin. Petri plates were inoculated
100μL of bacterial culture and were aseptically swab
using a sterile cotton swab and allowed to dry for a
few minutes. Each sterile disc was dipped in 100 μl of
the various extracts and allowed to dry for 15-30
minutes and carefully placed on the agar plate using
sterilized forceps, ensuring that the discs were at least
2cm separate from one another.
There were three - discs inoculated in each petri plate
(Streptomycin, methanol, extract). Three replicates
were set for each treatment (T1 - Echinothrix
diadema, T2- Echinometra oblonga, T3- Echinometra
mathaei, T4- Streptomycin sulfate, and T5- methanol).
After 30 min, the plates were properly labeled,
inverted and incubated at 37ºC. After the incubation
of the plates, zones of inhibition were observed and
diameter was measured using a digital vernier caliper.
Zones of inhibition were measured after 12, 24, 36
and 48 hours of incubation.
Antioxidant Activity Evaluation
DPPH Radical-Scavenging Assay
TwomL of extracted samples were added in 2mL of
4mm DPPH methanolic solution. An 85% methanol
solution was prepared by placing 850mL of absolute
methanol into a 1000mL volumetric flask and diluted
to mark with distilled water. A 4mM DPPH stock
solution was prepared by weighing 0.1577g of 2,2-
diphenyl-1-picrylhydrazyl (DPPH)in a dark/dim
condition and transferred to a 100-mL volumetric
flask covered with aluminum foil.
For DPPH working solution, a 0.1mm was prepared by
pipetting out 12.5mL of the DPPH stock solution into
500-mL volumetric flask and diluted to mark with 85%
methanol. The DPPH scavenging activity was done by
pipetting 0.5mL each of 6-hydrohy-2,5,7,8-
tetramethylchroman-2-carboxyli cacid (Trolox)
standards (0, 20, 40 ,60, 100, 160, 200, 240, 280,
320µM), checks (Ascorbic acid and BHA) and extracted
samples into test tubes. Five milliliter of DPPH working
solution was added and mixed using vortex and
incubated for 1-hour. The absorbance was read using
UV-vis at 517nm. The scavenging activity was calculated
as follows: μM trolox /g sample. The antioxidant assays
were done at Saint Mary’s University, Bayombong,
Nueva Vizcaya, Philippines.
Statistical Analysis
The characteristic observed as affected by different
treatments and was analyzed using analysis of
variance (ANOVA). The comparison of mean was
done using Duncan Multiple Range Test (DMRT) at
5% level of significance using SPSS v16.0.
J. Bio. & Env. Sci. 2021
60 | Barroga et al.
Results and discussion
Sample Identification
Digital photographs of live specimen were sent to the
National Museum of the Philippines for
identification. Using diagnostic keys, specimens were
identified as follows:
Echinothrix diadema
Fig. 1. Echinothrix diadema.
Kingdom: Animalia
Phylum: Echinodermata
Class: Echinoidea
Order: Diadematoida
Family: Diadematidae
Genus: Echinothrix
Species: diadema
The diadema urchin is a species of tropical sea urchin,
member of the Diadematidae family. E. diadema (Fig.
1) is a long - spine urchin. With its spines, the typical
diameter is 10–20cm (3.9–7.9 in). It is generally
black or blue-black in colour, and always dark. The
spines are closed at the tip; the anal sac is small and
dark. E. diadema occurs in shallow coral and coral
rubble areas at depths of 1 to 40 m. E. diadema is
herbivore displaying nocturnal feeding behavior. It is
known to graze on organic material and adults may
also feed on live hard corals (Schoppe, 2001).
Echinometra mathaei
Fig. 2. Echinometra mathaei.
Kingdom: Animalia
Phylum: Echinodermata
Class: Echinoidea
Order: Camarodonta
Family: Echinometridae
Genus: Echinometra
Species: mathaei
E. mathaei (Fig. 2) are roughly spherical in shape and
exhibit pentamourous symmetry. The urchin consists
of the main body known as the test and spines on the
ventral surface of the urchin are smaller in size and
are parted in the center where the feeding appendage
occurs, and spines are similarly smaller on the aboral
surface where they give way to the anus. E. mathaei is
a dark species digging itself into the basaltic and
calcareous rock where it lives (Horton, 2012).
Echinometra oblonga
Fig. 3. Echinometra oblonga.
J. Bio. & Env. Sci. 2021
61 | Barroga et al.
Kingdom: Animalia
Phylum: Echinodermata
Class: Echinoidea
Order: Camarodonta
Family: Echinometridae
Genus: Echinometra
Species: oblonga
Rock crevices are the natural habitat of E. oblonga (Fig.
3). The body of regular sea urchins possesses a pseudo-
spherical radially symmetric body with hard prominent
spines and prefers hard substratum. Body shape of
irregular sea urchin marked bilateral symmetry. Soft
spines are present that facilitate life style as sand and
mud burrowing animals (Yasmin, 2015).
Antibacterial Property of Echinothrix diadema,
Echinometra mathaei, and Echinometra oblonga
This study elucidates the antibacterial activity of
methanolic extract of different species of sea urchin
namely E.diadema, E.mathaei and E.oblonga against
E. coli and S. aureus. Diameters of zone of were used
as a measure of the degree of the antibacterial activity
on each strain and recorded after 12, 24, 36 and 48
hours using a digital vernier caliper.
The result of antibacterial activity of E. diadema, E.
obolonga, E. mathaei, streptomycin sulfate and
methanol against E. coli was shown in Table 1.
Results showed that after 12, 24, 36 and 48 hours of
incubation. The highest mean value was observed in
streptomycin sulfate which serves as the positive
control. It was also observed that E. diadema is the
only extract of sea urchin inhibited the growth of E.
coli with the highest diameter of 11.03 ± 1.75mm at 24
hours of incubation.
The zone of inhibition of E. diadema extract decreases
but still effective at 48 hours of incubation with diameter
of zone of inhibition of 7.52 ± 2.15mm (Fig. 4).
Table 1. Mean diameters of zone of inhibition by different treatments on E. coli after 12, 24, 36 and 48 hours of
incubation.
Treatment
Diameters of Zone of Inhibition (mm)
12 hrs 24 hrs 36 hrs 48 hrs
Echinothrix diadema 5.65± 0.80b 11.03 ± 1.75b 9.38 ± 1.99b 7.52 ± 2.15b
Echinometra mathaei 0.00± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c
Echinometra oblonga 0.00± 0.00 c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c
(+) Control 18.25± 0.70a 25.31± 0.82a 22.37 ± 0.87a 21.45 ± 0.90a
(-) Control 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c
*Values with the same letter are not significantly different at P<0.05 according to DMRT.
Fig. 4. Assay plates of extracts against E. coli, A: E. diadema methanol extract; B: E. oblonga methanol extract;
C: E. mathaei methanol extract; P: streptomycin sulfate (positive control); N: negative control (methanol) after
12, 24, 36 and 48 hours of incubation.
Analysis of variance revealed that at 5% level of
significance, there is significant difference among the
treatments. Statistical analysis showed that positive
control was significantly different from the rest of the
treatments. The extract of E. diadema exhibited mean
zone of inhibition which is significantly different
among the other sea urchin extract. The E. mathaei
and E. oblonga showed comparable results with the
negative control. Correspondingly, Table 2 present
the data for the zone of inhibition for S. aureus. After
12, 24 36, and 48 hours it is evident that the extract of
E.diadema inhibited the growth of S. aureus with the
highest diameter of 13.52 ± 1.13mm at 24 hours of
incubation and E. mathaei with the highest mean
J. Bio. & Env. Sci. 2021
62 | Barroga et al.
zone of inhibition of of 9.27 ± 2.06mm after 24 hours
of incubation (Fig. 5). It was observed that as the
incubation prolongs, zone of inhibition decreases in
both extract of E. diadema (10.53 ± 1.04mm) and E.
mathaei (6.48 ± 2.45mm) but is still effective at 48
hours of incubation. Analysis of variance revealed
that at 5% level of significance, there is significant
difference among the treatments. Statistical analysis
showed that positive control was significantly
different from the rest of the treatments. The extract
of both E. diadema and E. mathaei exhibited mean
zone of inhibition which is significantly different form
E. oblonga. The E. oblonga showed comparable
results with the negative control.
E. mathaei only inhibited the growth of S. aureus and
inactive against the bacterial strain E. coli. According
to the study of Silhavy et al. (2010), gram-negative
bacteria are surrounded by a thin peptidoglycan cell
wall, which itself is surrounded by an outer membrane
containing lipopolysaccharide which serves as a
physical barrier providing the bacteria protection from
its surroundings. For that reason, gram-negative
bacteria are more resistant to antibiotics.
Table 2. Mean diameters of zone of inhibition by different treatments on S. aureus after 12, 24, 36 and 48 hours
of incubation.
Treatment
Diameters of Zone of Inhibition (mm)
12 hrs 24 hrs 36 hrs 48 hrs
Echinothrix diadema 9.03± 1.45b 13.52 ± 1.13b 11.71 ± 1.35b 10.53 ± 1.04b
Echinometra mathaei 4.85± 0.63c 9.27 ± 2.06c 6.45 ± 3.64c 6.48 ± 2.45c
Echinometra oblonga 0.00± 0.00d 0.00 ± 0.00d 0.00 ± 0.00d 0.00 ± 0.00d
(+) Control 26.23± 2.13a 25.31± 0.82a 33.06 ± 1.29a 31.80 ± 1.63a
(-) Control 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c
*Values with the same letter are not significantly different at P<0.05 according to DMRT
Fig. 5. Assay plates of extracts against S. aureus, A: E.diadema methanol extract; B: E. oblonga methanol
extract; C: E. mathaei methanol extract; P: streptomycin sulfate (positive control); N: negative control
(methanol) after 12, 24, 36 and 48 hours of incubation
The antibacterial property of E. diadema can be
explained based on the study of Pettit & Ode (1979),
that states that E. diadema has 2,5-Dihydroxy-3-
ethylbenzoquinone (C8H8O4) that has been isolated
and identified using spectroscopic analysis by Awino
et al. (2016) as an active antibacterial compound.
On the other hand, E. oblonga produced no
antibacterial activity. This result is in accordance with
the study of Kazemi et al. (2016) wherein E. oblonga
produced no antibacterial activity against tested
bacteria. The study of Kazemi et al. (2016) also
concluded tissues of these sea urchins have just a
physical role against environmental stresses including
prey and predator and have no chemical function
such as antibacterial activity.
Antibacterial activity has also been reported in gonad
extracts of echinoid. In the latter study of Abubakar et
al. (2012) the antibacterial compound was shown to
be a lysozyme. These compounds have inhibitory
effect on both gram-positive and gram-negative
bacteria by disturbing the bacterial metabolism. This
may possibly explain its inhibitory effect on the test
organisms. The fact that the methanol extract of E.
mathaei inhibit the growth of S. aureus and E.
diadema inhibit the growth of both gram positive and
gram-negative bacteria indicates its broad spectrum
J. Bio. & Env. Sci. 2021
63 | Barroga et al.
of antibacterial activity. However, since its
antibacterial activity is significantly weaker than
streptomycin (positive control), this specifies the
antibacterial activity is not comparable to the
commercially available antibiotics, specifically
streptomycin. Its presence of minimal antibacterial
activity confirms its use as an anti-infection agent.
Antioxidant Activity of Echinothrix diadema,
Echinometra mathaei, and Echinometra mathaei
Scavenging effects of methanolic extracts of species of
sea urchin was presented in Table 3. The methanolic
extract of Echinometra oblonga produced the highest
antioxidant activity with the RSA of 64.46%, followed
by Echinometra mathaei (51.52%). The lowest RSA
was observed in Echinothrix diadema with 37.38%.
Spinochromes are colored molecules which are
involved in both the pigmentation and the
antioxidant activity of sea urchins. This suggests and
spinochrome pigments are highly concentrated in the
shells E. oblonga. In accordance to the study of Minh
et al. (2004) and Shankarlal et al. (2011) that
compounds isolated which is thespinochrome,
specifically 2,7 dihydroxy-3-acetyl-naptazarinexhibits
antioxidant activities and this was confirmed by the
strong orange to the brown-like color of the extract.
Table 3. Scavenging effects of methanolic extracts of
different species of sea urchin and standard cathechin
on DPPH.
Treatment
Radical Scavenging
Activity (%)
Echinothrix diadema 37.38%
Echinometra mathaei 51.52%
Echinometra oblonga 64.46%
(+) Control (Cathechin) 72.13%
*Values with the same letter are not significantly
different at P<0.05 according to DMRz
Their chemical structure suggests other bioactive
roles such as antioxidant property. Their antioxidant
potential and their capacity to absorb UV light—
which protects sea urchins from UV-induced damages
have already been reported by Brasseur et al. (2017).
According to the study of Lebedev et al. (2008) that it
is well documented that structures having several
phenolic OH groups can act as radical scavengers,
radical scavenging is the most abundant activity
reported for naphthoquinone pigments from sea
urchins. Antioxidant properties of pigments have
been studied in several different models.
Interestingly, pigments in anionic and neutral forms
appear to be capable of free-radical scavenging.
This suggests that sea urchin shells and spines, most
of which are discarded as waste after removal of
gonads, would be a new bio resource for natural
antioxidants.
Conclusion
In conclusion, bioactive components which are
responsible for antibacterial and antioxidant activity
has been successfully extracted using methanol. E.
diadema and E. mathaei which showed positive
results can be a promising source of antibacterial
activity. The antioxidant activity of both E. mathaei
and E. oblonga indicates that the examined
echinoderms could represent a new source of natural
antioxidants. These findings suggest that echinoderm
species is encouraged as a new tool for
biotechnological applications in the pharmaceutical
and nutraceutical field.
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Pharmacological activity of the methanolic extract of sea urchins against escherichia coli and staphylococcus aureus - JBES

  • 1. J. Bio. Env. Sci. 18(5), 57-64, May 2021. 2021 E-ISSN: 2225-3610, p-ISSN: 2223-7054 Research article By: Kate Jocel D. Barroga, Diana C. Castillo and Evaristo A. Abella Journal of Biodiversity and Environmental Sciences-JBES international network for natural sciences Source: wikimapia.org Research paper Source: Wikipedia.org Journal Name Publisher Name
  • 2. J. Bio. & Env. Sci. 2021 57 | Barroga et al. RESEARCH PAPER OPEN ACCESS Pharmacological activity of the methanolic extract of sea urchins against Escherichia coli and Staphylococcus aureus Kate Jocel D. Barroga1 , Diana C. Castillo*2,3 , Evaristo A. Abella2,3 1 Department of Biological Sciences, College of Science, Central Luzon State University, Science City of Muñoz, Nueva Ecija, Philippines 2 Faculty, Department of Biological Sciences, College of Science, Central Luzon State University, Science City of Muñoz, Nueva Ecija, Philippines 3 Biodiversity Conservation Laboratory, Interactive Laboratory, Department of Biological Sciences, College of Science, Central Luzon State University, Science City of Muñoz, Nueva Ecija, Philippines Article published on May 30, 2021 Key words: Pharmacological test, Antibacterial, Antioxidant Echinothrix diadema, Echinometra mathaei, Echinometra oblonga Abstract This study elucidated the pharmacological potential of sea urchins using methanol as extracting medium. The antibacterial potential was evaluated using the paper disc method and zone of inhibition against Escherichia coli and Staphylococcus aureus was measured. Antioxidant properties of sea urchins were evaluated using DPPH radical scavenging assay. Three species of sea urchin randomly collected along the intertidal zone of Diguisit, Baler Aurora were identified using diagnostic keys by the National Museum of the Philippines and they were identified as follows; Echinothrix diadema, Echinometra mathaei, and Echinometra oblonga. E. diadema recorded the highest diameter zone of inhibition against E. coli and S. aureus after 24 hours of incubation with 11.03 ± 1.75mm and 13.52 ± 1.13mm respectively while E. mathaei only inhibited S. aureus with zone of inhibition of 9.27 ± 2.06mm in 24 hours of incubation as well. As the zone of inhibition prolongs, the zone of inhibition decreases as observed in 48 hours of incubation. E. oblonga did not show inhibitoy effect, however it recorded the highest radical scavenging activity with 64.46% among the three species of sea urchins. This was followed by E. mathaei (51.52%) and E. diadema (37.38%). All collected species manifested antioxidant potential. Based on the results, the collected species of sea urchins has a pharmacological potential. *Corresponding Author: Diana C. Castillo  dccastillo@clsu.edu.ph Journal of Biodiversity and Environmental Sciences (JBES) ISSN: 2220-6663 (Print) 2222-3045 (Online) Vol. 18, No. 5, p. 57-64, 2021 http://www.innspub.net
  • 3. J. Bio. & Env. Sci. 2021 58 | Barroga et al. Introduction Marine invertebrates are excellent sources of bioactive compounds with antibacterial and antioxidant dynamics. Recent discovery on pharmacological dynamics has stimulated the search for natural agents or natural sources that will lead to a desirable antibacterial and secondary metabolites (Abubakar et al., 2012). The diversity of marine organisms in our ecosystem, secondary metabolites has been identified as one of very important compound available produced in marine organisms. Sea urchins are small, spiny, globular animals belong to the class Echinoidea of the echinoderm phylum (Shankarlal et al., 2011). Additionally, sea urchins have orbicular bodies coated with a strict shell and thoroughly covered with many sharp spines (Amarowicz et al., 2012). As stated in the study of Bich et al., (2004), echinoderms have pharmacologically active secondary metabolites. The antibacterial activity of sea urchin is generally assayed through various extracts with different solvents. Methanol extract of Tripneustes gratilla showed highest antimicrobial activity against Pseudomonas aeruginosa (Abubakar et al., 2012). Also, methanol extract of Diadema setosum exhibited higher zone of inhibition against Salmonella typhimurium, Staphylococcus epidermidis, Citrobacter freundii, and Klebsiella pneumoniae (Rahman et al., 2015). An investigation report of Bragadeeswaran et al. (2013) on the bioactive compounds of sea urchin Temnopleurus toreumaticus showed remarkable hemolytic and cytotoxic activities. The spines of purple sea urchin Strongylocentrotus nudus showed excellent activity by using DPPH scavenging activity indicating the presence of PHNQ as potential sources of natural antioxidants (Zhou et al., 2011). The present work focused on the screening of the antibacterial and antioxidant activity of whole globular body and tissues of Echinothrix diadema, Echinometra mathaei, and Echinometra oblonga collected from the intertidal zone of the coastal ecosystem of Barangay Diguisit, Baler, Aurora, Philippines. Materials and methods Collection and Sample Preparation Live specimens of sea urchins were randomly collected along the intertidal zone of the coastal ecosystem of Barangay Diguisit, Baler Aurora. Collected sea urchins were placed in a styrofoam box containing crushed ice and immediately brought to the laboratory. After dissection, all tissues were frozen in liquid nitrogen for 5 min and stored in unilluminated condition at -70°C to avoid thermo- degradation of secondary metabolites until extraction. After removal of the internal organs, the shells (with spines) were washed with a stream of cold-water ground and stored at -40°C until used. Specimen Identification After taking digital photographs of the live specimen, sea urchins were sent to the National Museum of the Philippines for identification using diagnostic keys. Methanolic Extraction of Echinoidea The extraction procedure was adopted from Abubakar et al. (2012) with some modifications. Twenty-one grams of Echinothrix diadema, 31g of Echinometra mathaei, and 17g of Echinometra oblonga were homogenized and extracted with 10 volumes/1 gram (v/w) of 70% (v/v) methanol for 48 hours. Sample was filtered using Whatman filter paper No.1. The filtrate was reduced at 55°C in a rotary evaporator. The extract was stored in sterile vial and was stored in 4°C prior to use. Screening of Antibacterial Activity Test Organisms E. coli (ATCC 2592; AN1964) and S. aureus (ATCC 6538; AN1823) were used as bacterial pathogens for the pharmacological potential of sea urchin species. Pathogens were obtained from the Philippine National Collection of Microorganisms, University of the Philippines, Los Baños, Laguna.
  • 4. J. Bio. & Env. Sci. 2021 59 | Barroga et al. Preparation of Inoculum The method in the “Manual on Antimicrobial Susceptibility Testing” by Lalitha (2004) was adopted in the preparation of the inoculum. Three to five well- isolated colonies of the same morphological type were selected from an agar plate culture. After 24 hours of incubation, the growth culture was transferred in prepared nutrient agar slants and incubated for 18 hours. A loopful of bacteria was transferred into 10mL nutrient broth and incubated at 37°C for 6 to 8 hours. Turbidity of the growing culture was adjusted with sterile broth to obtain turbidity comparable to that of 0.5mc Farland standard. The comparison was done visually against a white background and black lines under adequate light condition. Preparation of Assay Plates Thirty-eight grams of Mueller Hinton Agar II was dissolved and melted in one – liter distilled water and sterilized in an autoclave at 121°C, 15psi for 30 minutes. It was cooled down enough to maintain the liquid form and minimize moist inside the petri plates. It was poured on the sterilized petri plates and allowed to solidify. Preparation of Paper Disc Discs of Whatman no. 1 filter paper with a diameter of 6mm was cut out using an office punch and was placed in a petri plate and sterilized in an autoclaved at 121°C, 15 psi for 30 min. Antibacterial Assay Disc diffusion (Mokhlesi et al., 2011) was used to study the pharmacological property of collected species of sea urchin. Petri plates were inoculated 100μL of bacterial culture and were aseptically swab using a sterile cotton swab and allowed to dry for a few minutes. Each sterile disc was dipped in 100 μl of the various extracts and allowed to dry for 15-30 minutes and carefully placed on the agar plate using sterilized forceps, ensuring that the discs were at least 2cm separate from one another. There were three - discs inoculated in each petri plate (Streptomycin, methanol, extract). Three replicates were set for each treatment (T1 - Echinothrix diadema, T2- Echinometra oblonga, T3- Echinometra mathaei, T4- Streptomycin sulfate, and T5- methanol). After 30 min, the plates were properly labeled, inverted and incubated at 37ºC. After the incubation of the plates, zones of inhibition were observed and diameter was measured using a digital vernier caliper. Zones of inhibition were measured after 12, 24, 36 and 48 hours of incubation. Antioxidant Activity Evaluation DPPH Radical-Scavenging Assay TwomL of extracted samples were added in 2mL of 4mm DPPH methanolic solution. An 85% methanol solution was prepared by placing 850mL of absolute methanol into a 1000mL volumetric flask and diluted to mark with distilled water. A 4mM DPPH stock solution was prepared by weighing 0.1577g of 2,2- diphenyl-1-picrylhydrazyl (DPPH)in a dark/dim condition and transferred to a 100-mL volumetric flask covered with aluminum foil. For DPPH working solution, a 0.1mm was prepared by pipetting out 12.5mL of the DPPH stock solution into 500-mL volumetric flask and diluted to mark with 85% methanol. The DPPH scavenging activity was done by pipetting 0.5mL each of 6-hydrohy-2,5,7,8- tetramethylchroman-2-carboxyli cacid (Trolox) standards (0, 20, 40 ,60, 100, 160, 200, 240, 280, 320µM), checks (Ascorbic acid and BHA) and extracted samples into test tubes. Five milliliter of DPPH working solution was added and mixed using vortex and incubated for 1-hour. The absorbance was read using UV-vis at 517nm. The scavenging activity was calculated as follows: μM trolox /g sample. The antioxidant assays were done at Saint Mary’s University, Bayombong, Nueva Vizcaya, Philippines. Statistical Analysis The characteristic observed as affected by different treatments and was analyzed using analysis of variance (ANOVA). The comparison of mean was done using Duncan Multiple Range Test (DMRT) at 5% level of significance using SPSS v16.0.
  • 5. J. Bio. & Env. Sci. 2021 60 | Barroga et al. Results and discussion Sample Identification Digital photographs of live specimen were sent to the National Museum of the Philippines for identification. Using diagnostic keys, specimens were identified as follows: Echinothrix diadema Fig. 1. Echinothrix diadema. Kingdom: Animalia Phylum: Echinodermata Class: Echinoidea Order: Diadematoida Family: Diadematidae Genus: Echinothrix Species: diadema The diadema urchin is a species of tropical sea urchin, member of the Diadematidae family. E. diadema (Fig. 1) is a long - spine urchin. With its spines, the typical diameter is 10–20cm (3.9–7.9 in). It is generally black or blue-black in colour, and always dark. The spines are closed at the tip; the anal sac is small and dark. E. diadema occurs in shallow coral and coral rubble areas at depths of 1 to 40 m. E. diadema is herbivore displaying nocturnal feeding behavior. It is known to graze on organic material and adults may also feed on live hard corals (Schoppe, 2001). Echinometra mathaei Fig. 2. Echinometra mathaei. Kingdom: Animalia Phylum: Echinodermata Class: Echinoidea Order: Camarodonta Family: Echinometridae Genus: Echinometra Species: mathaei E. mathaei (Fig. 2) are roughly spherical in shape and exhibit pentamourous symmetry. The urchin consists of the main body known as the test and spines on the ventral surface of the urchin are smaller in size and are parted in the center where the feeding appendage occurs, and spines are similarly smaller on the aboral surface where they give way to the anus. E. mathaei is a dark species digging itself into the basaltic and calcareous rock where it lives (Horton, 2012). Echinometra oblonga Fig. 3. Echinometra oblonga.
  • 6. J. Bio. & Env. Sci. 2021 61 | Barroga et al. Kingdom: Animalia Phylum: Echinodermata Class: Echinoidea Order: Camarodonta Family: Echinometridae Genus: Echinometra Species: oblonga Rock crevices are the natural habitat of E. oblonga (Fig. 3). The body of regular sea urchins possesses a pseudo- spherical radially symmetric body with hard prominent spines and prefers hard substratum. Body shape of irregular sea urchin marked bilateral symmetry. Soft spines are present that facilitate life style as sand and mud burrowing animals (Yasmin, 2015). Antibacterial Property of Echinothrix diadema, Echinometra mathaei, and Echinometra oblonga This study elucidates the antibacterial activity of methanolic extract of different species of sea urchin namely E.diadema, E.mathaei and E.oblonga against E. coli and S. aureus. Diameters of zone of were used as a measure of the degree of the antibacterial activity on each strain and recorded after 12, 24, 36 and 48 hours using a digital vernier caliper. The result of antibacterial activity of E. diadema, E. obolonga, E. mathaei, streptomycin sulfate and methanol against E. coli was shown in Table 1. Results showed that after 12, 24, 36 and 48 hours of incubation. The highest mean value was observed in streptomycin sulfate which serves as the positive control. It was also observed that E. diadema is the only extract of sea urchin inhibited the growth of E. coli with the highest diameter of 11.03 ± 1.75mm at 24 hours of incubation. The zone of inhibition of E. diadema extract decreases but still effective at 48 hours of incubation with diameter of zone of inhibition of 7.52 ± 2.15mm (Fig. 4). Table 1. Mean diameters of zone of inhibition by different treatments on E. coli after 12, 24, 36 and 48 hours of incubation. Treatment Diameters of Zone of Inhibition (mm) 12 hrs 24 hrs 36 hrs 48 hrs Echinothrix diadema 5.65± 0.80b 11.03 ± 1.75b 9.38 ± 1.99b 7.52 ± 2.15b Echinometra mathaei 0.00± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c Echinometra oblonga 0.00± 0.00 c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c (+) Control 18.25± 0.70a 25.31± 0.82a 22.37 ± 0.87a 21.45 ± 0.90a (-) Control 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c *Values with the same letter are not significantly different at P<0.05 according to DMRT. Fig. 4. Assay plates of extracts against E. coli, A: E. diadema methanol extract; B: E. oblonga methanol extract; C: E. mathaei methanol extract; P: streptomycin sulfate (positive control); N: negative control (methanol) after 12, 24, 36 and 48 hours of incubation. Analysis of variance revealed that at 5% level of significance, there is significant difference among the treatments. Statistical analysis showed that positive control was significantly different from the rest of the treatments. The extract of E. diadema exhibited mean zone of inhibition which is significantly different among the other sea urchin extract. The E. mathaei and E. oblonga showed comparable results with the negative control. Correspondingly, Table 2 present the data for the zone of inhibition for S. aureus. After 12, 24 36, and 48 hours it is evident that the extract of E.diadema inhibited the growth of S. aureus with the highest diameter of 13.52 ± 1.13mm at 24 hours of incubation and E. mathaei with the highest mean
  • 7. J. Bio. & Env. Sci. 2021 62 | Barroga et al. zone of inhibition of of 9.27 ± 2.06mm after 24 hours of incubation (Fig. 5). It was observed that as the incubation prolongs, zone of inhibition decreases in both extract of E. diadema (10.53 ± 1.04mm) and E. mathaei (6.48 ± 2.45mm) but is still effective at 48 hours of incubation. Analysis of variance revealed that at 5% level of significance, there is significant difference among the treatments. Statistical analysis showed that positive control was significantly different from the rest of the treatments. The extract of both E. diadema and E. mathaei exhibited mean zone of inhibition which is significantly different form E. oblonga. The E. oblonga showed comparable results with the negative control. E. mathaei only inhibited the growth of S. aureus and inactive against the bacterial strain E. coli. According to the study of Silhavy et al. (2010), gram-negative bacteria are surrounded by a thin peptidoglycan cell wall, which itself is surrounded by an outer membrane containing lipopolysaccharide which serves as a physical barrier providing the bacteria protection from its surroundings. For that reason, gram-negative bacteria are more resistant to antibiotics. Table 2. Mean diameters of zone of inhibition by different treatments on S. aureus after 12, 24, 36 and 48 hours of incubation. Treatment Diameters of Zone of Inhibition (mm) 12 hrs 24 hrs 36 hrs 48 hrs Echinothrix diadema 9.03± 1.45b 13.52 ± 1.13b 11.71 ± 1.35b 10.53 ± 1.04b Echinometra mathaei 4.85± 0.63c 9.27 ± 2.06c 6.45 ± 3.64c 6.48 ± 2.45c Echinometra oblonga 0.00± 0.00d 0.00 ± 0.00d 0.00 ± 0.00d 0.00 ± 0.00d (+) Control 26.23± 2.13a 25.31± 0.82a 33.06 ± 1.29a 31.80 ± 1.63a (-) Control 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c 0.00 ± 0.00c *Values with the same letter are not significantly different at P<0.05 according to DMRT Fig. 5. Assay plates of extracts against S. aureus, A: E.diadema methanol extract; B: E. oblonga methanol extract; C: E. mathaei methanol extract; P: streptomycin sulfate (positive control); N: negative control (methanol) after 12, 24, 36 and 48 hours of incubation The antibacterial property of E. diadema can be explained based on the study of Pettit & Ode (1979), that states that E. diadema has 2,5-Dihydroxy-3- ethylbenzoquinone (C8H8O4) that has been isolated and identified using spectroscopic analysis by Awino et al. (2016) as an active antibacterial compound. On the other hand, E. oblonga produced no antibacterial activity. This result is in accordance with the study of Kazemi et al. (2016) wherein E. oblonga produced no antibacterial activity against tested bacteria. The study of Kazemi et al. (2016) also concluded tissues of these sea urchins have just a physical role against environmental stresses including prey and predator and have no chemical function such as antibacterial activity. Antibacterial activity has also been reported in gonad extracts of echinoid. In the latter study of Abubakar et al. (2012) the antibacterial compound was shown to be a lysozyme. These compounds have inhibitory effect on both gram-positive and gram-negative bacteria by disturbing the bacterial metabolism. This may possibly explain its inhibitory effect on the test organisms. The fact that the methanol extract of E. mathaei inhibit the growth of S. aureus and E. diadema inhibit the growth of both gram positive and gram-negative bacteria indicates its broad spectrum
  • 8. J. Bio. & Env. Sci. 2021 63 | Barroga et al. of antibacterial activity. However, since its antibacterial activity is significantly weaker than streptomycin (positive control), this specifies the antibacterial activity is not comparable to the commercially available antibiotics, specifically streptomycin. Its presence of minimal antibacterial activity confirms its use as an anti-infection agent. Antioxidant Activity of Echinothrix diadema, Echinometra mathaei, and Echinometra mathaei Scavenging effects of methanolic extracts of species of sea urchin was presented in Table 3. The methanolic extract of Echinometra oblonga produced the highest antioxidant activity with the RSA of 64.46%, followed by Echinometra mathaei (51.52%). The lowest RSA was observed in Echinothrix diadema with 37.38%. Spinochromes are colored molecules which are involved in both the pigmentation and the antioxidant activity of sea urchins. This suggests and spinochrome pigments are highly concentrated in the shells E. oblonga. In accordance to the study of Minh et al. (2004) and Shankarlal et al. (2011) that compounds isolated which is thespinochrome, specifically 2,7 dihydroxy-3-acetyl-naptazarinexhibits antioxidant activities and this was confirmed by the strong orange to the brown-like color of the extract. Table 3. Scavenging effects of methanolic extracts of different species of sea urchin and standard cathechin on DPPH. Treatment Radical Scavenging Activity (%) Echinothrix diadema 37.38% Echinometra mathaei 51.52% Echinometra oblonga 64.46% (+) Control (Cathechin) 72.13% *Values with the same letter are not significantly different at P<0.05 according to DMRz Their chemical structure suggests other bioactive roles such as antioxidant property. Their antioxidant potential and their capacity to absorb UV light— which protects sea urchins from UV-induced damages have already been reported by Brasseur et al. (2017). According to the study of Lebedev et al. (2008) that it is well documented that structures having several phenolic OH groups can act as radical scavengers, radical scavenging is the most abundant activity reported for naphthoquinone pigments from sea urchins. Antioxidant properties of pigments have been studied in several different models. Interestingly, pigments in anionic and neutral forms appear to be capable of free-radical scavenging. This suggests that sea urchin shells and spines, most of which are discarded as waste after removal of gonads, would be a new bio resource for natural antioxidants. Conclusion In conclusion, bioactive components which are responsible for antibacterial and antioxidant activity has been successfully extracted using methanol. E. diadema and E. mathaei which showed positive results can be a promising source of antibacterial activity. The antioxidant activity of both E. mathaei and E. oblonga indicates that the examined echinoderms could represent a new source of natural antioxidants. These findings suggest that echinoderm species is encouraged as a new tool for biotechnological applications in the pharmaceutical and nutraceutical field. References Abubakar LA, Mwangi CM, Uku JU, Ndirangu SN. 2011. Antimicrobial activity of various extracts of the sea urchin Tripneustes gratilla (Echinoidea). African Journal of Pharmacology and Therapeutics 1(1). Amarowicz R, Synowiecki J, Shahidi F. 2012. Chemical composition of shells from red (Strongylocentrotus franciscanus) and green (Strongylocentrotus droebachiensis) sea urchin. Journal of Food Chemistry 133, 822-826. Bich D, Chung D, Chuong B, Dong N, Dam D, Hien P, Lo V, Mai P, Man P, Nhu D. 2004. The medicinal plants and animals in Vietnam. Hanoi Science and Technology Publication 1.
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