GENETICS
CYTOGENETICS
Definition of Linkage, Coupling and Repulsion hypothesis, Linkage group- Drosophila, maize and man, Types of linkage-complete linkage and incomplete linkage, Factors affecting linkage- distance between genes, age, temperature, radiation, sex, chemicals and nutrition, Significance of linkage.
The tendency of two or more genes to stay together (i.e., the co-existence of two or more genes) in the same chromosome during inheritance is known as LINKAGE. The linked genes are present on the same chromosome are said to be SYNTENIC. The linked genes do not show independent assortment.
LINKAGE v/s INDEPENDENT ASSORTMENT
The frequency of linkage or the strength recombination is influenced by several factors (agents).
GENETICS
CYTOGENETICS
Definition of Linkage, Coupling and Repulsion hypothesis, Linkage group- Drosophila, maize and man, Types of linkage-complete linkage and incomplete linkage, Factors affecting linkage- distance between genes, age, temperature, radiation, sex, chemicals and nutrition, Significance of linkage.
The tendency of two or more genes to stay together (i.e., the co-existence of two or more genes) in the same chromosome during inheritance is known as LINKAGE. The linked genes are present on the same chromosome are said to be SYNTENIC. The linked genes do not show independent assortment.
LINKAGE v/s INDEPENDENT ASSORTMENT
The frequency of linkage or the strength recombination is influenced by several factors (agents).
A physical map of a chromosome or a genome that shows the physical locations of genes and other DNA sequences of interest. Physical maps are used to help scientists identify and isolate genes by positional cloning.
According to the ICSM (Intergovernmental Committee on Surveying and Mapping), there are five different types of maps: General Reference, Topographical, Thematic, Navigation Charts and Cadastral Maps and Plans.
Chromosomal aberrations are disruptions in the normal chromosomal content of a cell.
In other words, they are changes in the number and or arrangement of genes in the chromosomes.
A physical map of a chromosome or a genome that shows the physical locations of genes and other DNA sequences of interest. Physical maps are used to help scientists identify and isolate genes by positional cloning.
According to the ICSM (Intergovernmental Committee on Surveying and Mapping), there are five different types of maps: General Reference, Topographical, Thematic, Navigation Charts and Cadastral Maps and Plans.
Chromosomal aberrations are disruptions in the normal chromosomal content of a cell.
In other words, they are changes in the number and or arrangement of genes in the chromosomes.
Nesta conferência para a ANM, o oncogeneticista Dr. José Claudio Casali explica didaticamente o que é a genética e como ela pode ajudar no tratamento e na prevenção personalizados dos cânceres.
It describes the prevalence of Breast Cancer among BRCA 1/2 mutations with special consideration to biological background, detection and screening, actions taken upon discovering mutation carriers and whether we have a different therapeutic algorithm than sporadic cases. Special emphasis on the role of PARP inhibitors in the management of metastatic disease.
Audio and slides for this presentation are also available on YouTube: http://youtu.be/ukXhuy5cXrE
Huma Q. Rana, MD, a cancer geneticist with Dana-Farber Cancer Institute, explains the cancer risk associated with BRCA1 and BRCA2 gene mutations. This presentation was originally given on July 23, 2013 as part of the "What Every Woman Should Know" event put on by Dana-Farber's Susan F. Smith Center for Women's Cancers.
Eric Fowler, MS, CGC, Certified/Licensed Genetic Counselor, manager of Genetic Counseling at Cancer Treatment Centers of America(r) presents "Know Your Risk: Understanding Genetics and Breast Cancer." The webinar presentation addresses genetics and genetic counseling basics, factors that impact breast cancer risk, family history risk, hereditary breast cancer and the pros and cons of genetic testing.
Cell Biology and genetics paper - Mutation a basic touch to b.sc students with examples. DNA, genome, gene level mutation and chromosome level with examples. Touched some of the mutation types.
3. Types of Mutations
There are a variety of types of mutations. Two major categories
of mutations are germline mutations and somatic mutations.
# Germline mutations occur in gametes. These mutations are
especially significant because they can be transmitted to
offspring and every cell in the offspring will have the mutation.
#Somatic mutations occur in other cells of the body. These
mutations may have little effect on the organism because they
are confined to just one cell and its daughter cells. Somatic
mutations cannot be passed on to offspring.
Mutations also differ in the way that the genetic material is
changed. Mutations may change the structure of a chromosome
or just change a single nucleotide.
4.
5. Causes of Mutation
* Mutations have many possible causes. Some
mutations seem to happen spontaneously without
any outside influence.
They occur when mistakes are made during DNA
replication or transcription.
* Other mutations are caused by environmental
factors. Anything in the environment that can
cause a mutation is known as a mutagen.
Examples of mutagens are pictured
in Figure below.
6.
7. Mutations are essential for evolution to
occur. They are the ultimate source of
all new genetic material in a species.
Most mutation are harmful, but some
mutations are beneficial.
12. 1) Aneuploidy Refers to a numerical change in part
of the chromosome set.
Monosomic (2n-1)
-Lack of one chromosome each two identical chromosome
make bivalent, while the single chromosome not
combines with any chromosome so it’s called Univalent.
(Turner syndrome)
Nullisomic( 2n-2)
-Lack of two chromosomes there complete absence of a pair
of identical chromosomes.
Trisomic (2n+1)
-Increase in one chromosome, the chromosome repeats 3
times to form Trivalent. (Down syndrome)
Tetrasomic (2n+2)
-Increase by adding 2 identical chromosomes, the
chromosome repeated 4 times to form Quatrivalent.
13.
14.
15. 2) Polyploidy Refers to a numerical change in the
whole chromosome set.
Polyploidy can be induced in plants by some
chemicals as Colchicine.
Autopoly ploidy:
Are polyploids with multiple chromosomes sets derived
from single species as (Potato & Banana).
Allopolyploidy:
Are polyploids with chromosomes derived from
different species as Triticale (6 sets); 4 from
wheat(Triticum turgidum) & 2 from rye(Secale
cereale).
16. Examples
Triploid(3 sets) Seedless
watermelon/Salamanders.
Tetraploid(4 sets) Durum “ macaroni wheat”
Hexaploid(6 sets) Bread wheat.
Dodecaploid(12 sets) Xenopus genus.
In humans it rarely occur in liver cells, heart
muscle & in bone marrow.
17. (B) Structural Abnormalities
Structural abnormalities are mutations that change
chromosome structure.
They occur when a section of a chromosome breaks
off and rejoins incorrectly or does not rejoin at all.
Possible ways these mutations can occur are illustrated
in Figure below.
19. A point mutation is a change in a single nucleotide in
DNA. This type of mutation is usually less serious than
a chromosomal alteration.
Point mutations can be silent, missense, or
nonsense mutations, as shown in Table below.
The effects of point mutations depend on how they
change the genetic code.
20. Type Descriptio
n
Example Effect
Silent Mutated
codon codes
for the same
amino acid
CAA
(glutamine) →
CAG (glutamine)
None
Missense Mutated
codon codes
for a different
amino acid
GAG (glutamic
acid) → GTG
(valine)
Variable
Nonsense
Mutated
codon is a
premature
stop codon
CAA
(glutamine) →
UAA (stop)
usually
Serious
21.
22.
23. A frameshift mutation is a
deletion or insertion of one
or more nucleotides that
changes the reading frame
of the base sequence.
Deletions remove
nucleotides, and insertions
add nucleotides.
24. DNA repair systems are vital to the survival of all
organisms.
– Living cells contain several DNA repair systems
that can fix different types of DNA alterations.
In most cases, DNA repair is a multi-step process:
1. An abnormality in DNA structure is detected.
2. The abnormal DNA is removed.
3. Normal DNA is synthesized.
26. 2-Base excision repair(BER)
system
Base excision repair (BER) involves a category of
enzymes known as DNA-N-glycosylases :
– These enzymes can recognize a single damaged base and
cleave
the bond between it and the sugar in the DNA.
– Removes one base, excises several around it, and
replaces with
several new bases using Pol adding to 3’ ends then ligase
attaching
to 5’ end.
Depending on the species,, this repair system can
eliminate abnormal bases such as:
– Uracil; Thymine dimers
27.
28. 3-Nucleotide excision
repair(NER) system
This type of system can repair many types of DNA damage,
including:
– Thymine dimmers and chemically modified bases
NER is found in all eukaryotes and prokaryotes
– However, its molecular mechanism is better understood in
prokaryotes.
Several human diseases have been shown to involve
inherited defects in genes involved in NER:
– These include xeroderma pigmentosum (XP) and Cockayne
syndrome (CS)
" A common characteristic of both syndromes is an increased
sensitivity to sunlight “
31. 4-Mismatch repair(MMR)system
If proofreading fails, the methyl-directed mismatch
repair system comes to rescue.
This repair system is found in all species.
In E.coli by using (MutH,MutS & MutL) .
Methyl-directed mismatch repair recognizes
mismatched base pairs, excises the incorrect bases,
and then carries out
repair synthesis.
Eukaryotes also have mismatch repair, but the
mechanism to distinguish the template strand from the
new strand is still unclear.
– Four genes are involved in humans, hMSH2 and
hMLH1, hPMS1, and hPMS2.
Does the word mutation make you think of science fiction and bug-eyed monsters? Think again. Everyone has mutations. In fact, most people have dozens or even hundreds of mutations in their DNA.
Lethal mutation
Survival to Malaria
The mutation video
(occur some 20,000 times a day in each cell in our body!) by a DNA glycosylase. We have at least 8 genes encoding different DNA glycosylases each enzyme responsible for identifying and removing a specific kind of base damage.
This relies on DNA polymerase beta, one of at least 11 DNA polymerases encoded by our genes.
2-ligation of the break in the strand. Two enzymes are known that can do this; both require ATP to provide the needed energy.
#DNA's bases may be modified by deamination or alkylation. The position of the modified (damaged) base is called the "abasic site" or "AP site". #In E.coli, the DNA glycosylase can recognize the AP site and remove its base. Then, the AP endonuclease removes the AP site and neighboring nucleotides. #The gap is filled by DNA polymerase I and DNA ligase.
By using sets of protiens (UvrA, UvrB, UvrC & UvrD) and polymerase beta.
By using (MutH,MutS & MutL) and synthesis of the repair patch is done by DNA polymerase delta.