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Models of synaptic transmission
                part II




                     Dmitry Bibichkov
 Max Planck Institute for Biophysical Chemistry Göttingen, Germany
Bernstein Center for Computational Neuroscience Göttingen , Germany
Chemical synapses

                       Excitatory neurons
    • NMDA
      voltage-dependent Mg2+- block (removed at V > - 50 mV)

             α (t ) = g NMDA e(   − t /τ ↓
                                             −e
                                                  − t /τ ↑
                                                             )⋅ g   ∞ (V , [ Mg 2+ ]) ⋅ Θ (t )
                                                                           τ ↓ = 40ms        τ ↑ = 3ms




    [Jahr and Stevens 1990]


10.08.2010                                                                       D. Bibichkov, AACIMP-2010
Chemical synapses

                       Excitatory neurons
    • NMDA
      voltage-dependent Mg2+- block (removed at V > - 50 mV)

                      α (t ) = g NMDA e          (       − t /τ ↓
                                                                     −e
                                                                          − t /τ ↑
                                                                                      )⋅ g   ∞ (V , [ Mg 2+ ]) ⋅ Θ (t )
           1

         0.9
                                                                                                    τ ↓ = 40ms        τ ↑ = 3ms
         0.8

         0.7
                                                                                                              [ Mg 2+ ] − ε V − 1
         0.6
                                                                                                   g ∞ = (1 +          e )
                                                                                                                 β
     ∞




         0.5                                                                  0.01
    g




                                                                               0.1
         0.4                                                                     1
                                                                                10
         0.3

         0.2

         0.1

           0
               -8 0     -6 0   -4 0   -2 0           0          20    40             60
                                             V




   [Gabbiani et.al 1994]


10.08.2010                                                                                                D. Bibichkov, AACIMP-2010
Activity-dependent recovery

        Responses to regular spike trains at the calyx of Held.
        Fit each frequency separately.
                                            1
                                                                                            200Hz
                                      0.9                                                   100Hz
                                                                                             50Hz
                                      0.8
             n o rm a liz e d c u rre n t



                                                                                             20Hz
                                      0.7                                                    10Hz
                                                                                              5Hz
                                      0.6
                                                                                              2Hz
                                      0.5                                                     1Hz
                                                                                            0.5Hz
                                      0.4                                                   0.2Hz
                                      0.3

                                      0.2

                                      0.1
                                                0   5      10       15      20   25
                                                        s p ike num b e r

10.08.2010                                                                            D. Bibichkov, AACIMP-2010
Activity-dependent recovery

 Calcium accumulates during the trains of action potentials and
 leads to increased recovery rates during high-frequency
 stimulation
                                                           8


                                                           7

   Effective recovery                                      6
   rate:
                          r e c o v e r y r a te k , H z   5
   mean recovery
   rate over an ISI                                        4


                                                           3


                                                           2


                                                           1


                                                           0
                                                               0 .2   0 .5   1   2        5     10     20       50   100   200
                                                                                 in p u t f r e q u e n c y f, H z


10.08.2010                                                                                           D. Bibichkov, AACIMP-2010
Activity-dependent recovery




                 activity dependence
                 no activity dependence




        climbing fiber to Purkinje cell synapse               Calyx of Held
        [Dittmann and Regehr 1998]                            [Weis et.al. 1999]


      Activity-dependent recovery increases the range of characteristic
      frequencies towards the maximal recovery rate


10.08.2010                                                          D. Bibichkov, AACIMP-2010
Information Theory
         Entropy of stochastic signal S:                                    S                  R
         amount of variability in the stimulus statistics                         synapse
                                                                         (ISI)                 (PSC)
                               H ( S ) = − ∑ P ( s ) log 2 P ( s )
                                            s

        Conditional entropy of response R:
        variability of the response to a given stimulus s
                               H ( R | s ) = − ∑ P (r | s ) log 2 P (r | s)
                                                 r
        Noise entropy of response R: average response variability

         H noise ( R ) =   ∑
                           s
                               P ( s ) H ( R | s ) = − ∑ P ( s ) P (r | s ) log 2 P (r | s )
                                                        s ,r

         Mutual information: reduction of uncertainty about the signal
         due to the measurement of the response

                                I ( R, S ) = H ( S ) − H noise ( R)
10.08.2010                                                            D. Bibichkov, AACIMP-2010
Effects of synaptic dynamics on information transfer




  • Optimal inputs maximizing response entropy and mutual
    information for estimated synaptic parameters ?

  • Optimal synaptic parameters for given input statistics ?




10.08.2010                                     D. Bibichkov, AACIMP-2010
Effects of synaptic dynamics on information transfer
                synapse

       ISI                                       PSC

                                                strong           ‘optimal’
                             no depression
                                              depression        depression




   Transmission is optimal when the input statistics spans the dynamic
   range of possible responses.

10.08.2010                                        D. Bibichkov, AACIMP-2010
Output entropy decreases with frequency

      Deterministic model:   I (S , R) = H ( R)




10.08.2010                                        D. Bibichkov, AACIMP-2010
Output entropy decreases with frequency

Deterministic model: mutual information is equal to the differential
entropy of responses to Poisson spike trains :



                                            -1
                 o u t p u t e n tr o p y




                                            -2




                                            -4      F D R (t h e o r)
                                                    τ = 4 . 7 (t h e o r)
                                                    F D R (s im )
                                                    τ = 4 . 7 (s im )
                                             0 .1           1                   10   100
                                                                            f, H z

10.08.2010                                                                                 D. Bibichkov, AACIMP-2010
Effect of facilitation on information transmission




[Fuhrmann et al 2002]


  Facilitation sets an optimal range of frequency for information
  transmission.

10.08.2010                                         D. Bibichkov, AACIMP-2010
Stochastic model of release



             • Number of available vesicles before spike: Nx

             • Stochastic release of n ~ B(Nx,p) (binomial distribution)

                                              Nx  n
                  Pr( n released vesicles) = 
                                             n   .p .( 1 − p)Nx − n
                                                 
                   n = Nxp
             • Depletion of releasable pool: x → x − n / N

             • Stochastic postsynaptic response E ~ N(nq, nσ2)

             • Stochastic recovery of vesicles according to a Poisson process
             with rate k


10.08.2010                                                      D. Bibichkov, AACIMP-2010
Activity-dependent recovery extends the frequency range of effective
                             information transfer


    Stochastic model:
                           0 .5 5
                                                           S t o c h a s t ic , τ = 4 . 7 2 s
                                                           S t o c h a s t ic , τ g lo b a l
                            0.5                                                  eff
                                                           S t o c h a s t ic , τ (is i)
                                                                                 eff

                           0 .4 5


                            0.4
              I(ISI,PSR)




                           0 .3 5


                            0.3


                           0 .2 5


                            0.2



                                    1/8   1   8       32           128                      512

                                              f, Hz
   [J. Bao, DB, EN]

10.08.2010                                                                   D. Bibichkov, AACIMP-2010
Effect of facilitation on information transmission




                                          D+F


                              D
  [Jin Bao]



  Facilitation increases information transmission for a range of
  frequencies compared to synapses with pure depression.

10.08.2010                                          D. Bibichkov, AACIMP-2010
Optimal recovery rate

                      12                                        e ff
                                            − 0.6             τ r ( C a ly x )
                                τ opt ∝ f
                      10                                      o p t im a l τ

                                                               - 1 .6
                         8                          τo p t ∼ r
              τr ( s )

                         6

                         4

                         2

                  0
                         0 .1          1           8                    128
                                       input frequency (Hz)

  The parameters of the Calyx of Held synapse which fit the responses
  to the regular trains are close to the optimal in terms of transmission
  of information.
10.08.2010                                                              D. Bibichkov, AACIMP-2010
Network effects

  1. Generation of population spikes in network with recurrent excitation
     and depressing synapses [Loebel, Tsodyks 2002]

  2. Generation of sustained activity by calcium-dependent facilitation:
     short-term memory model [Mongillo et. al 2008]

  3. Self-organized criticality in networks with synaptic depression [Levina
     et.al 2007]

  4. Capacity modulation and sequence storage in associative memory
     networks [Bibitchkov et.al 2002]

  5. Stabilization of activity, oscillations and pattern switching in recurrent
     networks with "ring-like" structure [van Rossum 2009]




10.08.2010                                                D. Bibichkov, AACIMP-2010
Population spikes

   fully connected recurrent network

    Rate models




     Integrate and fire neurons




                                                  [Loebel, Tsodyks 2002]



10.08.2010                                  D. Bibichkov, AACIMP-2010
Population spikes

   Dependinc on connection strength or ext. input strength
   the network can be asynchronous or produce
   synchronous activity patterns




                                                   [Loebel, Tsodyks 2002]



10.08.2010                                   D. Bibichkov, AACIMP-2010
Population spikes

   Response to a tonic input elevation




                                                  [Loebel, Tsodyks 2002]



10.08.2010                                  D. Bibichkov, AACIMP-2010
Population spikes


                                     Responses to
                                     sharp stimuli of
                                     different
                                     frequencies




                                       [Loebel, Tsodyks 2002]

10.08.2010                       D. Bibichkov, AACIMP-2010
Short-term memory model


                                                    Facilitating synapse

                                                         τ   F   >> τ   D




 [Mongillo et. al 2008]



10.08.2010                                      D. Bibichkov, AACIMP-2010
Sustained activity: short-term memory model


                                                     p




                                                     p




                                                     p



 [Mongillo et. al 2008]



10.08.2010                                         D. Bibichkov, AACIMP-2010
Sustained activity: short-term memory model


   Robustness to noise and                                            p

   two-term memory


                                                                      p




                                                                     p




                                                                      p


 [Mongillo et. al 2008]



10.08.2010                                         D. Bibichkov, AACIMP-2010
Self-organized criticality in neuronal cultures


    • Power-law distribution of
    avalanche sizes
    • Exponent of -3/2
    •Dynamics is stable over many
    hours of recordings




  [Beggs and Plenz 2003, 2004]


10.08.2010                                          D. Bibichkov, AACIMP-2010
Self-organized ctiticality


       Static synapses                      Depressing synapses




 [Levina et. al 2007]


10.08.2010                                            D. Bibichkov, AACIMP-2010
Attractor networks with synaptic depression




[Bibitchkov et.al 2002]

10.08.2010                                     D. Bibichkov, AACIMP-2010
Ring model with synaptic depression




                                        [York & van Rossum 2009]

10.08.2010                                D. Bibichkov, AACIMP-2010
Ring model with synaptic depression




                                        [York & van Rossum 2009]

10.08.2010                                D. Bibichkov, AACIMP-2010
Acknowledgements

J.Michael Herrmann (University of Edinburgh)
Misha Tsodyks (Weizmann Institute)
Barak Blumenfeld (Weizmann Institute)
Erwin Neher (MPI for Biophysical Chemistry, Göttingen)
Holger Taschenberger (MPI for Biophysical Chemistry, Göttingen)
Jin Bao (MPI for Biophysical Chemistry, Göttingen)
I-Wen Chen (MPI for Biophysical Chemistry, Göttingen*)
Kun-Han Lim (MPI for Biophysical Chemistry, Göttingen)
Anna Levina (MPI for Dynamics and Self-Organization Göttingen)
Mark van Rossum (University of Edinburgh)


                       ORGANIZERS!!!!


10.08.2010                                    D. Bibichkov, AACIMP-2010

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Models of Synaptic Transmission (2)

  • 1. Models of synaptic transmission part II Dmitry Bibichkov Max Planck Institute for Biophysical Chemistry Göttingen, Germany Bernstein Center for Computational Neuroscience Göttingen , Germany
  • 2. Chemical synapses Excitatory neurons • NMDA voltage-dependent Mg2+- block (removed at V > - 50 mV) α (t ) = g NMDA e( − t /τ ↓ −e − t /τ ↑ )⋅ g ∞ (V , [ Mg 2+ ]) ⋅ Θ (t ) τ ↓ = 40ms τ ↑ = 3ms [Jahr and Stevens 1990] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 3. Chemical synapses Excitatory neurons • NMDA voltage-dependent Mg2+- block (removed at V > - 50 mV) α (t ) = g NMDA e ( − t /τ ↓ −e − t /τ ↑ )⋅ g ∞ (V , [ Mg 2+ ]) ⋅ Θ (t ) 1 0.9 τ ↓ = 40ms τ ↑ = 3ms 0.8 0.7 [ Mg 2+ ] − ε V − 1 0.6 g ∞ = (1 + e ) β ∞ 0.5 0.01 g 0.1 0.4 1 10 0.3 0.2 0.1 0 -8 0 -6 0 -4 0 -2 0 0 20 40 60 V [Gabbiani et.al 1994] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 4. Activity-dependent recovery Responses to regular spike trains at the calyx of Held. Fit each frequency separately. 1 200Hz 0.9 100Hz 50Hz 0.8 n o rm a liz e d c u rre n t 20Hz 0.7 10Hz 5Hz 0.6 2Hz 0.5 1Hz 0.5Hz 0.4 0.2Hz 0.3 0.2 0.1 0 5 10 15 20 25 s p ike num b e r 10.08.2010 D. Bibichkov, AACIMP-2010
  • 5. Activity-dependent recovery Calcium accumulates during the trains of action potentials and leads to increased recovery rates during high-frequency stimulation 8 7 Effective recovery 6 rate: r e c o v e r y r a te k , H z 5 mean recovery rate over an ISI 4 3 2 1 0 0 .2 0 .5 1 2 5 10 20 50 100 200 in p u t f r e q u e n c y f, H z 10.08.2010 D. Bibichkov, AACIMP-2010
  • 6. Activity-dependent recovery activity dependence no activity dependence climbing fiber to Purkinje cell synapse Calyx of Held [Dittmann and Regehr 1998] [Weis et.al. 1999] Activity-dependent recovery increases the range of characteristic frequencies towards the maximal recovery rate 10.08.2010 D. Bibichkov, AACIMP-2010
  • 7. Information Theory Entropy of stochastic signal S: S R amount of variability in the stimulus statistics synapse (ISI) (PSC) H ( S ) = − ∑ P ( s ) log 2 P ( s ) s Conditional entropy of response R: variability of the response to a given stimulus s H ( R | s ) = − ∑ P (r | s ) log 2 P (r | s) r Noise entropy of response R: average response variability H noise ( R ) = ∑ s P ( s ) H ( R | s ) = − ∑ P ( s ) P (r | s ) log 2 P (r | s ) s ,r Mutual information: reduction of uncertainty about the signal due to the measurement of the response I ( R, S ) = H ( S ) − H noise ( R) 10.08.2010 D. Bibichkov, AACIMP-2010
  • 8. Effects of synaptic dynamics on information transfer • Optimal inputs maximizing response entropy and mutual information for estimated synaptic parameters ? • Optimal synaptic parameters for given input statistics ? 10.08.2010 D. Bibichkov, AACIMP-2010
  • 9. Effects of synaptic dynamics on information transfer synapse ISI PSC strong ‘optimal’ no depression depression depression Transmission is optimal when the input statistics spans the dynamic range of possible responses. 10.08.2010 D. Bibichkov, AACIMP-2010
  • 10. Output entropy decreases with frequency Deterministic model: I (S , R) = H ( R) 10.08.2010 D. Bibichkov, AACIMP-2010
  • 11. Output entropy decreases with frequency Deterministic model: mutual information is equal to the differential entropy of responses to Poisson spike trains : -1 o u t p u t e n tr o p y -2 -4 F D R (t h e o r) τ = 4 . 7 (t h e o r) F D R (s im ) τ = 4 . 7 (s im ) 0 .1 1 10 100 f, H z 10.08.2010 D. Bibichkov, AACIMP-2010
  • 12. Effect of facilitation on information transmission [Fuhrmann et al 2002] Facilitation sets an optimal range of frequency for information transmission. 10.08.2010 D. Bibichkov, AACIMP-2010
  • 13. Stochastic model of release • Number of available vesicles before spike: Nx • Stochastic release of n ~ B(Nx,p) (binomial distribution)  Nx  n Pr( n released vesicles) =  n   .p .( 1 − p)Nx − n   n = Nxp • Depletion of releasable pool: x → x − n / N • Stochastic postsynaptic response E ~ N(nq, nσ2) • Stochastic recovery of vesicles according to a Poisson process with rate k 10.08.2010 D. Bibichkov, AACIMP-2010
  • 14. Activity-dependent recovery extends the frequency range of effective information transfer Stochastic model: 0 .5 5 S t o c h a s t ic , τ = 4 . 7 2 s S t o c h a s t ic , τ g lo b a l 0.5 eff S t o c h a s t ic , τ (is i) eff 0 .4 5 0.4 I(ISI,PSR) 0 .3 5 0.3 0 .2 5 0.2 1/8 1 8 32 128 512 f, Hz [J. Bao, DB, EN] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 15. Effect of facilitation on information transmission D+F D [Jin Bao] Facilitation increases information transmission for a range of frequencies compared to synapses with pure depression. 10.08.2010 D. Bibichkov, AACIMP-2010
  • 16. Optimal recovery rate 12 e ff − 0.6 τ r ( C a ly x ) τ opt ∝ f 10 o p t im a l τ - 1 .6 8 τo p t ∼ r τr ( s ) 6 4 2 0 0 .1 1 8 128 input frequency (Hz) The parameters of the Calyx of Held synapse which fit the responses to the regular trains are close to the optimal in terms of transmission of information. 10.08.2010 D. Bibichkov, AACIMP-2010
  • 17. Network effects 1. Generation of population spikes in network with recurrent excitation and depressing synapses [Loebel, Tsodyks 2002] 2. Generation of sustained activity by calcium-dependent facilitation: short-term memory model [Mongillo et. al 2008] 3. Self-organized criticality in networks with synaptic depression [Levina et.al 2007] 4. Capacity modulation and sequence storage in associative memory networks [Bibitchkov et.al 2002] 5. Stabilization of activity, oscillations and pattern switching in recurrent networks with "ring-like" structure [van Rossum 2009] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 18. Population spikes fully connected recurrent network Rate models Integrate and fire neurons [Loebel, Tsodyks 2002] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 19. Population spikes Dependinc on connection strength or ext. input strength the network can be asynchronous or produce synchronous activity patterns [Loebel, Tsodyks 2002] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 20. Population spikes Response to a tonic input elevation [Loebel, Tsodyks 2002] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 21. Population spikes Responses to sharp stimuli of different frequencies [Loebel, Tsodyks 2002] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 22. Short-term memory model Facilitating synapse τ F >> τ D [Mongillo et. al 2008] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 23. Sustained activity: short-term memory model p p p [Mongillo et. al 2008] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 24. Sustained activity: short-term memory model Robustness to noise and p two-term memory p p p [Mongillo et. al 2008] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 25. Self-organized criticality in neuronal cultures • Power-law distribution of avalanche sizes • Exponent of -3/2 •Dynamics is stable over many hours of recordings [Beggs and Plenz 2003, 2004] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 26. Self-organized ctiticality Static synapses Depressing synapses [Levina et. al 2007] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 27. Attractor networks with synaptic depression [Bibitchkov et.al 2002] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 28. Ring model with synaptic depression [York & van Rossum 2009] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 29. Ring model with synaptic depression [York & van Rossum 2009] 10.08.2010 D. Bibichkov, AACIMP-2010
  • 30. Acknowledgements J.Michael Herrmann (University of Edinburgh) Misha Tsodyks (Weizmann Institute) Barak Blumenfeld (Weizmann Institute) Erwin Neher (MPI for Biophysical Chemistry, Göttingen) Holger Taschenberger (MPI for Biophysical Chemistry, Göttingen) Jin Bao (MPI for Biophysical Chemistry, Göttingen) I-Wen Chen (MPI for Biophysical Chemistry, Göttingen*) Kun-Han Lim (MPI for Biophysical Chemistry, Göttingen) Anna Levina (MPI for Dynamics and Self-Organization Göttingen) Mark van Rossum (University of Edinburgh) ORGANIZERS!!!! 10.08.2010 D. Bibichkov, AACIMP-2010