This document provides an overview of UV-Visible spectroscopy. It begins with an introduction that describes UV radiation and electronic excitations. It explains how UV spectroscopy works and the types of electronic transitions that are observed. It discusses chromophores, substituent effects, and selection rules. The document then covers using UV spectroscopy for structure determination, including discussing dienes and applying the Woodward-Fieser rules to determine structures of cyclic and acyclic dienes. In the final section, it discusses common errors in applying the Woodward-Fieser rules.
The anomeric effect was discovered in 1955 with the work of J.T. Edward, N.-J. Chu, and R.U. Lemieux.
Contributed by: Cody F. Bender, Charles E. Price (Undergraduates), University of Utah, 2016
An overview of the use of the Marcus Theory to calculate the energies of transition states.
Contributed by: Elizabeth Greenhalgh, Amanda Bischoff, and Matthew Sigman, University of Utah, 2015
CONTENTS
INTRODUCTION
CONCEPTS OF WALSH DIAGRAM
APPLICATION IN TRIATOMIC MOLECULES
[IN AH₂ TYPE OF MOLECULES(BeH₂,BH₂,H₂O)]
INTRODUCTION
Arthur Donald Walsh FRS The introducer of walsh diagram (8 August 1916-23 April 1977) was a British chemist, professor of chemistry at the University of Dundee . He was elected FRS in 1964. He was educated at Loughborough Grammar School.
Walsh diagrams were first introduced in a series of ten papers in one issue of the Journal of the Chemical Society . Here, he aimed to rationalize the shapes adopted by polyatomic molecules in the ground state as well as in excited states, by applying theoretical contributions made by Mulliken .
The anomeric effect was discovered in 1955 with the work of J.T. Edward, N.-J. Chu, and R.U. Lemieux.
Contributed by: Cody F. Bender, Charles E. Price (Undergraduates), University of Utah, 2016
An overview of the use of the Marcus Theory to calculate the energies of transition states.
Contributed by: Elizabeth Greenhalgh, Amanda Bischoff, and Matthew Sigman, University of Utah, 2015
CONTENTS
INTRODUCTION
CONCEPTS OF WALSH DIAGRAM
APPLICATION IN TRIATOMIC MOLECULES
[IN AH₂ TYPE OF MOLECULES(BeH₂,BH₂,H₂O)]
INTRODUCTION
Arthur Donald Walsh FRS The introducer of walsh diagram (8 August 1916-23 April 1977) was a British chemist, professor of chemistry at the University of Dundee . He was elected FRS in 1964. He was educated at Loughborough Grammar School.
Walsh diagrams were first introduced in a series of ten papers in one issue of the Journal of the Chemical Society . Here, he aimed to rationalize the shapes adopted by polyatomic molecules in the ground state as well as in excited states, by applying theoretical contributions made by Mulliken .
Crown ethers
NOMENCLATURE
GENERAL SYNTHESIS OF CROWN ETHER
AZA CROWN
CRYPTAND
APPLICATIONS
1. SYNTHETIC APPLICTION
Esterification
Saponification
Anhydride formation
Potassium permanganate oxidation
Aromatic substitution reactions
Elimination reactions
Displacement reaction
Generation of carbenes
Superoxide anion
Alkylations – 1. o-alkylations
2. c-alkylations
3. n-alkylations
2. ANALYTICAL APPLICATION
Determination of gold in geological samples
Super critical fluid extraction of trace metal from solid and liquid materials
Application of ionic liquids in analytical chemistry
Oxidation and determination of aldehydes
Crown ethers are used in the laboratory as phase transfer catalyst
OTHER APPLICATION
It is used in photocynation
Resolution of racemic mixture
Benzoin condensation
Hetrocyclisation
Synthesis of furanones
Acetylation of secondary amines in presence of primary amine
NMR- Diamagnetic Anisotropy and its effect on chemical shiftD.R. Chandravanshi
The shift in the position of the NMR region resulting from the shielding and deshielding by electrons is called chemical shift.
When a proton is present inside the magnetic field more close to an electro positive atom more applied magnetic field is required to cause excitation. This effect is called shielding effect.
When a proton is present outside the magnetic field close to a electronegative atom less applied magnetic field is required to cause excitation . This effect is called deshielding effect
Photoelectron spectroscopy
- a single photon in/ electron out process
• X-ray Photoelectron Spectroscopy (XPS)
- using soft x-ray (200-2000 eV) radiation to
examine core-levels.
• Ultraviolet Photoelectron Spectroscopy (UPS)
- using vacuum UV (10-45 eV) radiation to
examine valence levels.
more chemistry contents are available
1. pdf file on Termmate: https://www.termmate.com/rabia.aziz
2. YouTube: https://www.youtube.com/channel/UCKxWnNdskGHnZFS0h1QRTEA
3. Facebook: https://web.facebook.com/Chemist.Rabia.Aziz/
4. Blogger: https://chemistry-academy.blogspot.com/
photo redox reactions
A carbene is any neutral carbon species which contains a non-bonding valance pair of electrons.
Contributed by Alison Brown & Nathan Buehler, Undergraduates, University of Utah
Crown ethers
NOMENCLATURE
GENERAL SYNTHESIS OF CROWN ETHER
AZA CROWN
CRYPTAND
APPLICATIONS
1. SYNTHETIC APPLICTION
Esterification
Saponification
Anhydride formation
Potassium permanganate oxidation
Aromatic substitution reactions
Elimination reactions
Displacement reaction
Generation of carbenes
Superoxide anion
Alkylations – 1. o-alkylations
2. c-alkylations
3. n-alkylations
2. ANALYTICAL APPLICATION
Determination of gold in geological samples
Super critical fluid extraction of trace metal from solid and liquid materials
Application of ionic liquids in analytical chemistry
Oxidation and determination of aldehydes
Crown ethers are used in the laboratory as phase transfer catalyst
OTHER APPLICATION
It is used in photocynation
Resolution of racemic mixture
Benzoin condensation
Hetrocyclisation
Synthesis of furanones
Acetylation of secondary amines in presence of primary amine
NMR- Diamagnetic Anisotropy and its effect on chemical shiftD.R. Chandravanshi
The shift in the position of the NMR region resulting from the shielding and deshielding by electrons is called chemical shift.
When a proton is present inside the magnetic field more close to an electro positive atom more applied magnetic field is required to cause excitation. This effect is called shielding effect.
When a proton is present outside the magnetic field close to a electronegative atom less applied magnetic field is required to cause excitation . This effect is called deshielding effect
Photoelectron spectroscopy
- a single photon in/ electron out process
• X-ray Photoelectron Spectroscopy (XPS)
- using soft x-ray (200-2000 eV) radiation to
examine core-levels.
• Ultraviolet Photoelectron Spectroscopy (UPS)
- using vacuum UV (10-45 eV) radiation to
examine valence levels.
more chemistry contents are available
1. pdf file on Termmate: https://www.termmate.com/rabia.aziz
2. YouTube: https://www.youtube.com/channel/UCKxWnNdskGHnZFS0h1QRTEA
3. Facebook: https://web.facebook.com/Chemist.Rabia.Aziz/
4. Blogger: https://chemistry-academy.blogspot.com/
photo redox reactions
A carbene is any neutral carbon species which contains a non-bonding valance pair of electrons.
Contributed by Alison Brown & Nathan Buehler, Undergraduates, University of Utah
UV spectroscopy is an analytical method used to detct the numbers of double and triple bonds present in dienes ,trienes and polyenes compounds.The energy corresponds to EM radiation in the ultraviolet (UV) region, 100-350 nm, and visible (VIS) regions 350-700 nm of the spectrum is known as UV spectrum.
UV/Vis spectroscopy is routinely used in analytical chemistry for the quantitative determination of different analytes, such as transition metal ions, highly conjugated organic compounds, and biological macromolecules. Molecules containing bonding and non-bonding electrons undergo electronic transitions and absorb energy in the form of ultraviolet or visible light to excite these electrons to higher anti-bonding molecular orbitals.
UV spectroscopy is a technique used to analyze the composition of a sample by measuring its absorption or reflection of ultraviolet light. The sample is placed in a UV spectrophotometer and exposed to a range of UV wavelengths. The amount of light absorbed or reflected at each wavelength is recorded and plotted as a UV spectrum. This spectrum can be used to identify specific compounds in the sample, as each compound absorbs or reflects light at different wavelengths. This technique is widely used in fields such as chemistry, biology, and environmental science to analyze a variety of samples such as drugs, food, and water.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Lateral Ventricles.pdf very easy good diagrams comprehensive
Elementary organic spectroscopy
1. Dr. L. Sakthikumar M.Sc., M.Phil., Ph.D
Assistant Professor in Chemistry
Saiva Bhanu Kshatriya College
Aruppukottai – 626101
Tamilnadu , India
ORGNAIC SPECTROSCOPY
3. 3
UV Spectroscopy
I. Introduction
UV radiation and Electronic Excitations
The difference in energy between molecular bonding, non-bonding and
anti-bonding orbitals ranges from 125-650 kJ/mole
This energy corresponds to EM radiation in the ultraviolet (UV) region,
100-350 nm, and visible (VIS) regions 350-700 nm of the spectrum
For comparison, recall the EM spectrum:
Using IR we observed vibrational transitions with energies of 8-40 kJ/mol
at wavelengths of 2500-15,000 nm
For purposes of our discussion, we will refer to UV and VIS spectroscopy
as UV
UVX-rays IRg-rays RadioMicrowave
Visible
4. 4
UV Spectroscopy
I. Introduction
The Spectroscopic Process
In UV spectroscopy, the sample is irradiated with the broad spectrum of
the UV radiation
If a particular electronic transition matches the energy of a certain band
of UV, it will be absorbed
The remaining UV light passes through the sample and is observed
From this residual radiation a spectrum is obtained with “gaps” at these
discrete energies – this is called an absorption spectrum
5. 5
UV Spectroscopy
I. Introduction
Observed electronic transitions
The lowest energy transition (and most often obs. by UV) is typically that
of an electron in the Highest Occupied Molecular Orbital (HOMO) to the
Lowest Unoccupied Molecular Orbital (LUMO)
For any bond (pair of electrons) in a molecule, the molecular orbitals are
a mixture of the two contributing atomic orbitals; for every bonding
orbital “created” from this mixing (s, ), there is a corresponding anti-
bonding orbital of symmetrically higher energy (s*, *)
The lowest energy occupied orbitals are typically the s; likewise, the
corresponding anti-bonding s orbital is of the highest energy
-orbitals are of somewhat higher energy, and their complementary anti-
bonding orbital somewhat lower in energy than s*.
Unshared pairs lie at the energy of the original atomic orbital, most often
this energy is higher than or s (since no bond is formed, there is no
benefit in energy)
6. 6
UV Spectroscopy
I. Introduction
C. Observed electronic transitions
Here is a graphical representation
Energy
s
s
n
Atomic orbitalAtomic orbital
Molecular orbitals
Occupied levels
Unoccupied levels
7. 7
UV Spectroscopy
I. Introduction
C. Observed electronic transitions
7. From the molecular orbital diagram, there are several possible electronic
transitions that can occur, each of a different relative energy:
Energy
s
s
n
s
s
n
n
s
s
alkanes
carbonyls
unsaturated cmpds.
O, N, S, halogens
carbonyls
8. 8
UV Spectroscopy
I. Introduction
C. Observed electronic transitions
Although the UV spectrum extends below 100 nm (high energy), oxygen
in the atmosphere is not transparent below 200 nm
Special equipment to study vacuum or far UV is required
Routine organic UV spectra are typically collected from 200-700 nm
This limits the transitions that can be observed:
s
s
n
n
s
s
alkanes
carbonyls
unsaturated cmpds.
O, N, S, halogens
carbonyls
150 nm
170 nm
180 nm √ - if conjugated!
190 nm
300 nm √
9. 9
UV Spectroscopy
I. Introduction
D. Selection Rules
For an electron to transition, certain quantum mechanical constraints
apply – these are called “selection rules”
For example, an electron cannot change its spin quantum number during
a transition – these are “forbidden”
Other examples include:
the number of electrons that can be excited at one time
symmetry properties of the molecule
symmetry of the electronic states
To further complicate matters, “forbidden” transitions are sometimes
observed (albeit at low intensity) due to other factors
10. 10
UV Spectroscopy
I. Introduction
E. Band Structure
It would seem that since the electronic energy levels of a pure sample of
molecules would be quantized, fine, discrete bands would be observed for
atomic spectra, this is the case
In molecules, when a bulk sample of molecules is observed, not all bonds
(read – pairs of electrons) are in the same vibrational or rotational energy
states
This effect will impact the wavelength at which a transition is observed –
very similar to the effect of H-bonding on the O-H vibrational energy
levels in neat samples
11. 11
UV Spectroscopy
III. Chromophores
C. Substituent Effects
General – Substituents may have any of four effects on a chromophore
i. Bathochromic shift (red shift) – a shift to longer l; lower energy
ii. Hypsochromic shift (blue shift) – shift to shorter l; higher energy
iii. Hyperchromic effect – an increase in intensity
iv. Hypochromic effect – a decrease in intensity
200 nm 700 nm
e
Hypochromic
Hypsochromic
Hyperchromic
Bathochromic
12. 12
UV Spectroscopy
IV. Structure Determination
A. Dienes
For acyclic butadiene, two conformers are possible – s-cis and s-trans
The s-cis conformer is at an overall higher potential energy than the s-
trans; therefore the HOMO electrons of the conjugated system have less
of a jump to the LUMO – lower energy, longer wavelength
s-trans s-cis
13. 13
UV Spectroscopy
IV. Structure Determination
A. Dienes
1. General Features
The Y2 Y3
* transition is observed as an intense absorption (e =
20,000+) based at 217 nm within the observed region of the UV
While this band is insensitive to solvent (as would be expected) it is
subject to the bathochromic and hyperchromic effects of alkyl
substituents as well as further conjugation
Consider:
lmax = 217 253 220 227 227 256 263 nm
14. 14
UV Spectroscopy
IV. Structure Determination
A. Dienes
2. Woodward-Fieser Rules
Woodward and the Fiesers performed extensive studies of terpene and
steroidal alkenes and noted similar substituents and structural features
would predictably lead to an empirical prediction of the wavelength for
the lowest energy * electronic transition
This work was distilled by Scott in 1964 into an extensive treatise on the
Woodward-Fieser rules in combination with comprehensive tables and
examples – (A.I. Scott, Interpretation of the Ultraviolet Spectra of Natural
Products, Pergamon, NY, 1964)
A more modern interpretation was compiled by Rao in 1975 – (C.N.R.
Rao, Ultraviolet and Visible Spectroscopy, 3rd Ed., Butterworths, London,
1975)
15. 15
UV Spectroscopy
IV. Structure Determination
A. Dienes
2. Woodward-Fieser Rules - Dienes
The rules begin with a base value for lmax of the chromophore being
observed:
acyclic butadiene = 217 nm
The incremental contribution of substituents is added to this base value
from the group tables:
Group Increment
Extended conjugation +30
Each exo-cyclic C=C +5
Alkyl +5
-OCOCH3 +0
-OR +6
-SR +30
-Cl, -Br +5
-NR2 +60
16. 16
UV Spectroscopy
IV. Structure Determination
A. Dienes
2. Woodward-Fieser Rules - Dienes
For example:
Isoprene - acyclic butadiene = 217 nm
one alkyl subs. + 5 nm
222 nm
Experimental value 220 nm
Allylidenecyclohexane
- acyclic butadiene = 217 nm
one exocyclic C=C + 5 nm
2 alkyl subs. +10 nm
232 nm
Experimental value 237 nm
17. 17
UV Spectroscopy
IV. Structure Determination
A. Dienes
3. Woodward-Fieser Rules – Cyclic Dienes
There are two major types of cyclic dienes, with two different base values
Heteroannular (transoid): Homoannular (cisoid):
e = 5,000 – 15,000 e = 12,000-28,000
base lmax = 214 base lmax = 253
The increment table is the same as for acyclic butadienes with a couple
additions:
Group Increment
Additional homoannular +39
Where both types of diene
are present, the one with
the longer l becomes the
base
18. 18
UV Spectroscopy
IV. Structure Determination
A. Dienes
3. Woodward-Fieser Rules – Cyclic Dienes
In the pre-NMR era of organic spectral determination, the power of the
method for discerning isomers is readily apparent
Consider abietic vs. levopimaric acid:
C
O
OHC
O
OH
levopimaric acidabietic acid
19. 19
UV Spectroscopy
IV. Structure Determination
A. Dienes
3. Woodward-Fieser Rules – Cyclic Dienes
For example:
1,2,3,7,8,8a-hexahydro-8a-methylnaphthalene
heteroannular diene = 214 nm
3 alkyl subs. (3 x 5) +15 nm
1 exo C=C + 5 nm
234 nm
Experimental value 235 nm
20. 20
UV Spectroscopy
IV. Structure Determination
A. Dienes
3. Woodward-Fieser Rules – Cyclic Dienes
C
O
OH
heteroannular diene = 214 nm
4 alkyl subs. (4 x 5) +20 nm
1 exo C=C + 5 nm
239 nm
homoannular diene = 253 nm
4 alkyl subs. (4 x 5) +20 nm
1 exo C=C + 5 nm
278 nm
C
O
OH
21. 21
UV Spectroscopy
IV. Structure Determination
A. Dienes
3. Woodward-Fieser Rules – Cyclic Dienes
Be careful with your assignments – three common errors:
R
This compound has three exocyclic
double bonds; the indicated bond is
exocyclic to two rings
This is not a heteroannular diene; you would
use the base value for an acyclic diene
Likewise, this is not a homooannular diene;
you would use the base value for an acyclic
diene
22. IR – SPECTROSCOPY- REF. ANIMATION
Range 4000 – 400 Cm-1
Vibrational change makes the bond become
dipolar in nature.
More useful in the determination of functional
groups of an organic compound
To confirm the presence of inter and intra
molecular H-Bonding
To confirm the identity of two similar
molecules using finger print region
24. 1680–1640 (m) –C=C– stretch alkenes
1650–1580 (m) N–H bend 1˚ amines
1600–1585 (m) C–C stretch (in–ring) aromatics
1550–1475 (s) N–O asymmetric stretch nitro compounds
1500–1400 (m) C–C stretch (in–ring) aromatics
1470–1450 (m) C–H bend alkanes
1370–1350 (m) C–H rock alkanes
1360–1290 (m) N–O symmetric stretch nitro compounds
1335–1250 (s) C–N stretch aromatic amines
1320–1000 (s) C–O stretch alcohols, carboxylic acids, esters, ethers
1300–1150 (m) C–H wag (–CH2X) alkyl halides
1250–1020 (m) C–N stretch aliphatic amines
1000–650 (s) =C–H bend alkenes
950–910 (m) O–H bend carboxylic acids
910–665 (s, b) N–H wag 1˚, 2˚ amines
900–675 (s) C–H “oop” aromatics
850–550 (m) C–Cl stretch alkyl halides
725–720 (m) C–H rock alkanes
700–610 (b, s) –C≡C–H: C–H bend alkynes
690–515 (m) C–Br stretch alkyl halides
m=medium, w=weak, s=strong, n=narrow, b=broad, sh=sharp
25. 1H & 13CNMR SPECTRA
Used to study the protonic environment,
carbon skeleton and its spin – spin
interaction in an organic molecule when
introduced in a strong magnetic field
Useful in the determination of cis-trans
isomerism
Useful in the determination of presence of –
OH group
26. 1HNMRChemical Shift Data
Shown below is a chart of where some common kinds of protons appear in the d
scale. Note that most protons appear between 0 and 10 ppm. The reference,
tetramethylsilane (TMS) appears at 0 ppm, and aldehydes appear near 10 ppm.
Note that these are typical values and that there are lots of exceptions!
d ppm
TMS
CH3CH3
RONR2
CH3OCH3
RO
HR
R R
HH
RO
Ph CH3
HR
Cl
CH3
Ph
OH
OH
R
NH
R
Upfieldregion
of the spectrum
Downfieldregion
of the spectrum
TMS = Me Si
Me
Me
Me
012345678910
CH3HO
(R)