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CRISPR in Cancer Biology and
Therapy
Omoyayi Ibrahim
20174831@std.neu.edu.tr
Department of Biomedical Engineering
Near East University
History of
CRISPR
 CRISPRs were first identified in E. coli in 1987 by a Japanese
scientist, Yoshizumi Ishino, and his team, who accidentally
cloned an unusual series of repeated sequences interspersed
with spacer sequences while analyzing a gene responsible for
the conversion of alkaline phosphatase.
 Emmanuelle Charpentier is the co-inventor of CRISPR. Together
with Dr. Doudna, Dr. Charpentier was involved in the
biochemical characterization of guide RNA and Cas9 enzyme-
mediated DNA cleavage
Introduction to
CRISPR Cas 9
System
 CRISPR stands for Clustered Regularly Interspaced
Palindromic Repeats.
 CRISPR-Cas9 was adapted from a naturally occurring
genome editing system that bacteria use as an immune
defense.
 DNA endonuclease that is directed to induce double
strand breaks (DSBs) at specific genomic loci via a
programmable guide RNA (gRNA) molecule that mediates
complementary DNA–RNA base pairing.
 The target sequence must be flanked on the 3′ side by an
‘NGG’ protospacer adjacent motif (PAM) sequence.
 The DSB created by Cas9 can be resolved by either
precise homology-directed repair (HDR) or, non-
homologous end joining (NHEJ)
 HDR enables the introduction of specific changes, while
insertions and deletions (indels) from NHEJ can be
exploited to disrupt coding and noncoding sequences
CRISPR Cas 9 System
Adaptation of CRISPR / CAS 9 from Prokaryotes into a Therapy in
Eukaryotes
Nature Review, 2020
The development of CRISPR tools that can be applied to the study of cancer
biology
Nature Review, 2020
Future
Direction on
CRISPR Cas 9
System
Nature Review, 2020
References
 1. Sung, H. et al. Global Cancer Statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36
cancers in 185 countries. CA Cancer J. Clin. 71, 209–249 (2021).
 2. Mojica, F. J., Díez-Villaseñor, C., García-Martínez, J. & Soria, E. Intervening sequences of regularly spaced
prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60, 174–182 (2005).
 3. Barrangou, R. et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709–1712
(2007).
 4. Bolotin, A., Quinquis, B., Sorokin, A. & Ehrlich, S. D. Clustered regularly interspaced short palindrome repeats
(CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 2551–2561 (2005).
 5. Pourcel, C., Salvignol, G. & Vergnaud, G. CRISPR elements in Yersinia pestis acquire new repeats by preferential
uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653–663
(2005).
 6. Cho, S. W., Kim, S., Kim, J. M. & Kim, J.-S. Targeted genome engineering in human cells with the Cas9 RNA-
guided endonuclease. Nat. Biotechnol. 31, 230–232 (2013).
 7. Jinek, M. et al. RNA-programmed genome editing in human cells. eLife 2, e00471 (2013).
 8. Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823–826 (2013).
 9. Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819–823 (2013).
 10. Adli, M. The CRISPR tool kit for genome editing and beyond. Nat. Commun. 9, 1911 (2018)
Questions?
Feel free to email me any questions you have;
20174831@std.neu.edu.tr

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CRISPR in Cancer Biology and Therapy.pptx

  • 1. CRISPR in Cancer Biology and Therapy Omoyayi Ibrahim 20174831@std.neu.edu.tr Department of Biomedical Engineering Near East University
  • 2. History of CRISPR  CRISPRs were first identified in E. coli in 1987 by a Japanese scientist, Yoshizumi Ishino, and his team, who accidentally cloned an unusual series of repeated sequences interspersed with spacer sequences while analyzing a gene responsible for the conversion of alkaline phosphatase.  Emmanuelle Charpentier is the co-inventor of CRISPR. Together with Dr. Doudna, Dr. Charpentier was involved in the biochemical characterization of guide RNA and Cas9 enzyme- mediated DNA cleavage
  • 3. Introduction to CRISPR Cas 9 System  CRISPR stands for Clustered Regularly Interspaced Palindromic Repeats.  CRISPR-Cas9 was adapted from a naturally occurring genome editing system that bacteria use as an immune defense.  DNA endonuclease that is directed to induce double strand breaks (DSBs) at specific genomic loci via a programmable guide RNA (gRNA) molecule that mediates complementary DNA–RNA base pairing.  The target sequence must be flanked on the 3′ side by an ‘NGG’ protospacer adjacent motif (PAM) sequence.  The DSB created by Cas9 can be resolved by either precise homology-directed repair (HDR) or, non- homologous end joining (NHEJ)  HDR enables the introduction of specific changes, while insertions and deletions (indels) from NHEJ can be exploited to disrupt coding and noncoding sequences
  • 4. CRISPR Cas 9 System
  • 5. Adaptation of CRISPR / CAS 9 from Prokaryotes into a Therapy in Eukaryotes Nature Review, 2020
  • 6. The development of CRISPR tools that can be applied to the study of cancer biology Nature Review, 2020
  • 7. Future Direction on CRISPR Cas 9 System Nature Review, 2020
  • 8. References  1. Sung, H. et al. Global Cancer Statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J. Clin. 71, 209–249 (2021).  2. Mojica, F. J., Díez-Villaseñor, C., García-Martínez, J. & Soria, E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol. 60, 174–182 (2005).  3. Barrangou, R. et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709–1712 (2007).  4. Bolotin, A., Quinquis, B., Sorokin, A. & Ehrlich, S. D. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 2551–2561 (2005).  5. Pourcel, C., Salvignol, G. & Vergnaud, G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653–663 (2005).  6. Cho, S. W., Kim, S., Kim, J. M. & Kim, J.-S. Targeted genome engineering in human cells with the Cas9 RNA- guided endonuclease. Nat. Biotechnol. 31, 230–232 (2013).  7. Jinek, M. et al. RNA-programmed genome editing in human cells. eLife 2, e00471 (2013).  8. Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823–826 (2013).  9. Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819–823 (2013).  10. Adli, M. The CRISPR tool kit for genome editing and beyond. Nat. Commun. 9, 1911 (2018)
  • 9. Questions? Feel free to email me any questions you have; 20174831@std.neu.edu.tr