Spectroscopy is the science that deals with interactions between electromagnetic radiation and matter. It involves transitions between energy levels of atoms and molecules when they absorb or emit photons. Different regions of the electromagnetic spectrum, such as visible light, ultraviolet light, infrared light, and radio waves, can be used in spectroscopy. Absorption spectroscopy measures the absorption of radiation to identify substances based on their unique absorption patterns. Beer's law describes the relationship between absorbance of a sample and its concentration.
Cyclic voltammetry readout circuitry for DNA biosensor applicationjournalBEEI
Cyclic voltammetry electrochemical biosensors reported a wide usage and applications for its fast response, able to be miniaturized and its sensitivity. However, the bulky, expensive and laboratory-based readout circuitry made it impossible to be used in the field-based environment. A miniaturized and portable readout circuitry for the DNA detection using hybridization technique had been design and developed in this work. It embedded with fabricated FR4 based sensor and produced respective current when the applied voltage was within the range of 0 to 0.5 V. The readout circuitry had been verified with five analysis environments. Bare Au with distilled water (dH2O), bare Au with ferricyanide reagent solution, DNA immobilization, DNA non-hybridization and DNA hybridization. All the results performed produced peak cathodic current when the applied input voltage is within 0.5 V to 3 V and hence proved that the miniaturized and portable readout circuitry is suitable to be implemented for cyclic voltammetry electrochemical biosensor.
Cyclic voltammetry readout circuitry for DNA biosensor applicationjournalBEEI
Cyclic voltammetry electrochemical biosensors reported a wide usage and applications for its fast response, able to be miniaturized and its sensitivity. However, the bulky, expensive and laboratory-based readout circuitry made it impossible to be used in the field-based environment. A miniaturized and portable readout circuitry for the DNA detection using hybridization technique had been design and developed in this work. It embedded with fabricated FR4 based sensor and produced respective current when the applied voltage was within the range of 0 to 0.5 V. The readout circuitry had been verified with five analysis environments. Bare Au with distilled water (dH2O), bare Au with ferricyanide reagent solution, DNA immobilization, DNA non-hybridization and DNA hybridization. All the results performed produced peak cathodic current when the applied input voltage is within 0.5 V to 3 V and hence proved that the miniaturized and portable readout circuitry is suitable to be implemented for cyclic voltammetry electrochemical biosensor.
High frequency Titrations is an analytical technique in which a radio frequency electric field is applied for which electric conductance of analytical substance governs the response of detector.
Case Study: Cyclic Voltametric MeasurementHasnain Ali
The design of an ac Cyclic Voltammetric Measurement System for the in –situ measurement of dissolved oxygen in sediment on the seabed. The measurement strategy should be based on linear ramp cyclic voltammetry
Knocking Door of Cyclic Voltammetry - cv of CV by Monalin MishraMONALINMISHRA
This ppt presentation shares some short basic knowledge on the electroanalytical technique of Cyclic Voltammetry. It also covers the working of CV with some short videos and photos.It also provides general explanation on some relevent techniques
A complete and comprehensive presentation on UV-VISIBLE SPECTROSCOPY.
The purpose of making, uploading these presentations for understanding for both the students and the teachers.
Each and every topic is arranged in series.
Slide by slide the topic should be covered to make your concepts Strong.
High frequency Titrations is an analytical technique in which a radio frequency electric field is applied for which electric conductance of analytical substance governs the response of detector.
Case Study: Cyclic Voltametric MeasurementHasnain Ali
The design of an ac Cyclic Voltammetric Measurement System for the in –situ measurement of dissolved oxygen in sediment on the seabed. The measurement strategy should be based on linear ramp cyclic voltammetry
Knocking Door of Cyclic Voltammetry - cv of CV by Monalin MishraMONALINMISHRA
This ppt presentation shares some short basic knowledge on the electroanalytical technique of Cyclic Voltammetry. It also covers the working of CV with some short videos and photos.It also provides general explanation on some relevent techniques
A complete and comprehensive presentation on UV-VISIBLE SPECTROSCOPY.
The purpose of making, uploading these presentations for understanding for both the students and the teachers.
Each and every topic is arranged in series.
Slide by slide the topic should be covered to make your concepts Strong.
Introduction, electromagnetic radiation, units, electromagnetic and absorption spectra, Lambert’s and Beer’s laws, deviations from Lambert’s–Beer’s law, chromophores and auxochromes, absorption and intensity shift, types of electronic transition, effects of solvents,
electronic transition in polyenes, instrumentation, colorimetry, Woodward-Fieser rules for
calculating absorption maximum, analysis of mixtures, applications of ultraviolet and visible
spectroscopy in quantitative analysis of drugs, use of ultra violet and visible spectroscopy in
structural analysis.
Ultraviolet spetroscopy by Dr. Monika Singh part-1 as per PCI syllabusMonika Singh
UV Visible spectroscopy as per PCI syllabus: Electronic transitions, chromophores, auxochromes, spectral shifts, solvent effect on absorption spectra, Beer and Lambert’s law, Derivation and deviations.
Introduction to Spectroscopy,
Introduction to UV, electronic transitions, terminology, chromophore, Auxochrome, Examples and Applications.
Introduction to IR, Fundamental vibrations, Types of Vibrations, Factors affecting the vibrational freaquencies, Group frequencies, examples and applications.
Thesis on the masses of photons with different wavelengths.pdf WilsonHidalgo8
It deals with the methods and calculations to measure the masses of photons with different wavelengths.
where I was able to create two experimental calculations to explain the measurements of the masses of the photons.
and I hope that this thesis competes with others, in order to obtain a physics prize.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
2. The science that deals with light and its absorption and emission by
solutions and other material substances is called spectroscopy or
spectrometry. OR
Spectroscopy is the science that deals with the interactions of
radiation with matter (atomic and molecular).
Spectrometric methods are a large group of analytical methods
The most widely used spectrometric methods are based on
electromagnetic radiation (light, gamma rays, X-rays, UV,
microwave, and radio-frequency).
The most interesting types of interactions in spectroscopy involve
transitions between different energy levels of chemical species.
Other types of interactions, such as reflection. refraction. elastic
scattering, interference, and diffraction, are often related to the bulk
properties of materials rather than to energy levels of specific
molecules or atoms.
3. The specific types of interactions that we observe depend strongly
on the energy of the radiation used and the mode of detection.
In spectrochemical analysis procedures, the degree to which light is
absorbed, or the intensity of light that is emitted, is related to the
amount of an analyte present in the sample tested.
The Electromagnetic Spectrum
Wavelengths can vary in distance from as little as fractions of
atomic diameters to as long as several miles.
This suggests the existence of an extremely broad spectrum of
wavelengths(Fig.1.1)
This electromagnetic spectrum of light is so broad that we break it
down into regions.
The region of wavelengths that we see with our eyes is called the
visible region
EMR is a form of energy whose behavior is described by the
properties of both waves and particles.
5. EMR consists of oscillating electric and magnetic fields that
propagate through space along a linear path and with a constant
velocity (Fig.1.2).
In a vacuum, EMR travels at the speed of light, c, which is 2.99792
x108 m/s.
In a medium containing matter, EMR travels with a velocity v, less
than c because of interaction b/n the EM field and e-s in the atoms
or molecules of the medium.
The difference between v and c is small enough (< 0.1%) that the
speed of light to 3 significant figures, 3.00x108 m/s, is sufficiently
accurate for most purposes.
Oscillations in the electric and magnetic fields are perpendicular to
each other, and to the direction of the wave’s propagation.
5
6. Fig.1.2.Plane-polarized EMR of wavelength λ, propagating
along the x-axis. The electric field of plane-polarized light is
confined to a single plane. Ordinary, unpolarized light has
electric field components in all planes.
7. With regard to energy, it is more convenient to think of light as
particles called photons.
Each photon carries the energy, E, which is given by E= hv
When a sample absorbs EMR it undergoes a change in energy.
The interaction between the sample and the EMR is easiest to
understand if we assume that EMR consists of a beam of energetic
particles called photons.
When a photon is absorbed by a sample, it is “destroyed,” and its
energy acquired by the sample.
The energy of a photon, in joules, is related to its frequency,
wavelength, or wave number by E = hv = hc/λ = hcṼ
where h is Planck's constant, which has a value of 6.62618x10-34 J·s.
C is velocity of Light on vacuum and its value is 2.99792 x 108 m/s
λ is wavelength , Ṽ is wave number and v is frequency
8. The length of an electromagnetic wave is called its
wavelength (λ). In a set of repeating waves, λ is the
physical distance from a point on one wave, such as the
crest of the wave, to the crest on the next wave.
Unit: Angstrom, nm, µm
Frequency () The number of flips, or oscillations, that
occur in one second.
The relationship between the speed of light c , wavelength,
and frequency is :
C=
9. The energy, E, of one photon depends on its frequency of
oscillation :
where h is Planck's constant (6.62618x10-34 J·s)
Velocity Of Light on vacuum = 2.99792 x 108 m/s
When light passes through other media, the velocity of light
. Since the energy of a photon is fixed, the frequency of
a photon does not change.
Thus for a given frequency of light, the wavelength must
as the velocity decreases.
What is the frequency of a light that has a wavelength of
537 nm? Ans = 5.59 x1014 sec-1
What is the λ of light that has a frequency of 7.89 1014sec-1?
Express the answer in both cm and nm.
Ans 0.0000380 cm = 380 nm
E = h = hc /
10. Light is a form of energy & each wavelength or frequency
has a certain amount of energy associated with it.
This energy is considered to be the energy associated with
a single photon of the light. Thus, the particle theory and
the wave theory are linked via energy.
The relationship between energy & frequency is as
follows E = hv
where E is energy, v is the frequency, and h is a
proportionality constant known as Planck’s constant, after
the famous physicist Max Planck (6.63x10-34J sec)
11. A line spectrum, meaning that individual absorption lines
are observed, rather than a continuous, unbroken band,
like that observed for the copper sulfate solution.
Continuous spectrum, the spectrum is an unbroken
pattern, left to right. It does not display any breaks or
sharp peaks of absorption at particular wavelengths, but
rather shows that a smooth band of wavelengths in a
given region, such as the red region, is absorbed.
If a solution displays a blue color, which means that the
blue portion of the visible region is not absorbed, but
transmitted to our eyes, while the red portion is absorbed.
The absorption spectrum of this solution in the visible
region is shown in Fig.1.3.
12. Atoms in which no electrons are in the higher levels are
said to be in the ground state. This state is designated in
energy level diagrams as E0.
Atoms in which there is an electron in the higher level
are said to be in an excited state.
Excited states are designated in energy level diagrams as
E1, E2, E3, etc. An energy level diagram consists of short
horizontal lines representing the levels or states, with
each line labeled as E0, E1, etc.
Often, an energy level diagram shows the movement of
electrons between levels with longer vertical arrows.
The movement of an electron between electron energy
levels is called an electronic energy transition.
13. This spectrum clearly shows that wavelengths in the blue
& violet regions (350-500nm) are not absorbed, while
wavelengths in the red region (650-750nm) are absorbed.
a. b.
Fig.1.3.The absorption spectrum of a)visible region of a
copper sulfate solution. b) ultraviolet region of a gaseous
copper atoms.
14. When a molecule absorbs a photon, the energy of the
molecule increases & the molecule is promoted to an
excited state. If a molecule emits a photon, the energy of
the molecule is lowered.
The lowest energy state of a molecule is called the ground
state.
The amount of light absorbed is called the absorbance(A).
When radiation passes through a layer of solid, liquid/gas,
certain frequencies may be absorbed, a process in which
EM energy is transferred to the sample.
It is important to keep in mind that the light coming in
must be exactly the same energy as the energy difference
between the two electronic levels; otherwise, it will not be
absorbed at all.
15. An energy level diagram of an atom showing the fact
that some wavelengths possess too much or too little
energy to be absorbed, while another possesses the exact
energy required and is therefore absorbed
16. Absorption is produced when electron absorbs incoming
photon and jumps from a lower orbit to a higher orbit
Emission is produced when electron jumps from a higher
orbit to a lower orbit and emits a photon of the same
energy
18. Many cpds absorb radiation. The diagram below shows a beam of
monochromatic radiation of radiant power I0 directed at a sample
solution.
Absorption takes place and the beam of radiation leaving the
sample has radiant power I.
Transmittance, T, is defined as the fraction of the original light
that passes through the sample.
Transmittance: T= I/ Io Therefore, T has the range 0 to l. The
percent transmittance is simply l00T & ranges between 0 & 100%.
Absorption promotes these particles from their ground state to
more higher-energy excited state.
19. The amount of radiation absorbed may be measured in a number of
ways: Transmittance, T = I / I0 % Transmittance, %T = 100 T
Absorbance, A = log10 1 / T A = log10 I0 / I
A = log10 100 / %T A = 2 - log10 %T
20. The last equation, A = 2 - log10 %T , is worth remembering
because it allows you to easily calculate absorbance from
percentage transmittance data.
The relationship between absorbance and transmittance is
illustrated in the following diagram:
The equation representing the Beer’s law: A = ε b c
Where :- A is absorbance (no units, A = log10 I0 / I )
ε is the molar absorbtivity that measure the amount of light
absorbed per unit conc. with units of L mol-1
cm-1
.
b is the path length of the sample i.e. the path length of the cuvette
in which the sample is contained.
21. We will express this measurement in cm and c is the conc. of the
cpd in solution, expressed in mol L-1.
Beer’s law tells us that absorbance depends on the total quantity of
the absorbing cpd in the light path through the cuvette.
If we plot absorbance against concentration, we get a straight line
passing through the origin (0,0).