1) The document describes the canonical partition function for an ideal monatomic gas. It shows that the partition function can be broken into translational, electronic, and nuclear contributions which are independent.
2) Key relationships are developed between the partition function and thermodynamic properties like internal energy, entropy, heat capacity, and more. Knowing the partition function provides expressions for properties like the Helmholtz free energy.
3) For an ideal monatomic gas, the translational partition function is derived and shown to be proportional to volume to the power of 3/2. The electronic and nuclear contributions are accounted for but not explicitly derived.
lecture slide on:
Gibbs free energy and Nernst Equation, Faradaic Processes and Factors Affecting Rates of Electrode Reactions, Potentials and Thermodynamics of Cells, Kinetics of Electrode Reactions, Kinetic controlled reactions,Essentials of Electrode Reactions,BUTLER-VOLMER MODEL FOR THE ONE-STEP, ONE-ELECTRON PROCESS,Current-overpotential curves for the system, Mass Transfer by Migration And Diffusion,MASS-TRANSFER-CONTROLLED REACTIONS,
Lecture 8: Introduction to Quantum Chemical Simulation graduate course taught at MIT in Fall 2014 by Heather Kulik. This course covers: wavefunction theory, density functional theory, force fields and molecular dynamics and sampling.
Partition function indicates the mode of distribution of particles in various energy states. It plays a role similar to the wave function of the quantum mechanics,which contains all the dynamical information about the system.
First part of Statistical Thermodynamics includes: Introduction, Ensembles, Types of Ensembles, Thermodynamic Probability, Boltzmann Distribution, Lagrange's Undetermined Multipliers, Partition Function, Types of Partition Functions, Thermodynamic Properties in terms of partition Function, Heat Capacity, Heat Capacity of Monoatomic Solids, Dulong-Petit law, Einstein Model for solids, 3rd Law and Residual Entropy
In the quantum level, there are profound differences between fermions (follows Fermi-Dirac statistic) and bosons (follows Bose-Einstein statistic).
As a gas of bosonic atoms is cooled very close to absolute zero temperature, their characteristic will change dramatically.
More accurately when its temperature below a critical temperature Tc, a large fraction of the atoms condenses in the lowest quantum states .
This dramatic phenomenon is known as Bose-Einstein condensation
The Rydberg formula helps to determine the wavenumber or wavelengths of hydrogen spectral lines obtained in the hydrogen spectrum. Previously, Johann Jakob Balmer discovered an empirical formula to determine the wavelengths of hydrogen spectral lines obtained in the visible region of the hydrogen spectrum. As we all know, the hydrogen spectrum is not limited to the visible zone only. It occupies the ultraviolet and infrared parts of the electromagnetic spectrum also. Hence, the scientists' quests to determine the spectral positions of various spectral lines of the hydrogen spectrum finally came to an end with the Rydberg formula.
For more information on this topic, kindly visit our blog at;
https://jayamchemistrylearners.blogspot.com/2022/05/rydberg-ritz-combination-principle.html
In this talk I will discuss different approximations in DFT: pseduo-potentials, exchange correlation functions.
The presentation can be downloaded here:
http://www.attaccalite.com/wp-content/uploads/2022/03/dft_approximations.odp
lecture slide on:
Gibbs free energy and Nernst Equation, Faradaic Processes and Factors Affecting Rates of Electrode Reactions, Potentials and Thermodynamics of Cells, Kinetics of Electrode Reactions, Kinetic controlled reactions,Essentials of Electrode Reactions,BUTLER-VOLMER MODEL FOR THE ONE-STEP, ONE-ELECTRON PROCESS,Current-overpotential curves for the system, Mass Transfer by Migration And Diffusion,MASS-TRANSFER-CONTROLLED REACTIONS,
Lecture 8: Introduction to Quantum Chemical Simulation graduate course taught at MIT in Fall 2014 by Heather Kulik. This course covers: wavefunction theory, density functional theory, force fields and molecular dynamics and sampling.
Partition function indicates the mode of distribution of particles in various energy states. It plays a role similar to the wave function of the quantum mechanics,which contains all the dynamical information about the system.
First part of Statistical Thermodynamics includes: Introduction, Ensembles, Types of Ensembles, Thermodynamic Probability, Boltzmann Distribution, Lagrange's Undetermined Multipliers, Partition Function, Types of Partition Functions, Thermodynamic Properties in terms of partition Function, Heat Capacity, Heat Capacity of Monoatomic Solids, Dulong-Petit law, Einstein Model for solids, 3rd Law and Residual Entropy
In the quantum level, there are profound differences between fermions (follows Fermi-Dirac statistic) and bosons (follows Bose-Einstein statistic).
As a gas of bosonic atoms is cooled very close to absolute zero temperature, their characteristic will change dramatically.
More accurately when its temperature below a critical temperature Tc, a large fraction of the atoms condenses in the lowest quantum states .
This dramatic phenomenon is known as Bose-Einstein condensation
The Rydberg formula helps to determine the wavenumber or wavelengths of hydrogen spectral lines obtained in the hydrogen spectrum. Previously, Johann Jakob Balmer discovered an empirical formula to determine the wavelengths of hydrogen spectral lines obtained in the visible region of the hydrogen spectrum. As we all know, the hydrogen spectrum is not limited to the visible zone only. It occupies the ultraviolet and infrared parts of the electromagnetic spectrum also. Hence, the scientists' quests to determine the spectral positions of various spectral lines of the hydrogen spectrum finally came to an end with the Rydberg formula.
For more information on this topic, kindly visit our blog at;
https://jayamchemistrylearners.blogspot.com/2022/05/rydberg-ritz-combination-principle.html
In this talk I will discuss different approximations in DFT: pseduo-potentials, exchange correlation functions.
The presentation can be downloaded here:
http://www.attaccalite.com/wp-content/uploads/2022/03/dft_approximations.odp
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
3. Canonical partition function for ideal monatomic gas
A system of N non-interacting identical atoms:
!
N
q
Q
N
states i energy levels
of a single atom
j
i
j
q e e
2
2 2 2
2 3
, ,
8
x y z x y z
h
l l l l l l
mV
From quantum mechanics:
Atom of ideal gas in cubic box
of volume V
3
4. Canonical partition function for ideal monatomic gas
Translational quantum numbers
, , :
x y z
l l l
2 2 2 2
2 3
2 2
2 2 2 2
2 3 2 3 2 3
8
states i
8 8 8
x y z
i
x y z
y
x z
x y z
h l l l
mV
l l l
h l
h l h l
mV mV mV
x y z
l l l
q e e
e e e q q q
4
5. With suitable assumptions:
3 2
2
2m
q V
h
• Approximate each sum and solve as an
integral
• Then compute q
• Then compute Q
5
6. The calculated Q is the canonical partition
function for ideal monatomic gas
We have considered the contribution of atomic translation to
the partition function
However, we have not included other effects, such as
contribution of the electronic and nuclear energy states.
We will get back to this matter later in this slide set.
6
7. Canonical partition function for ideal
monatomic gas
Then:
!
N
q
Q
N
3 2
2
2
! !
N
N
N
m
V
h
q
Q
N N
2
3 2
ln ln ln ln ln !
! 2
N
q m
Q N N V N
N h
7
8. Canonical partition function for ideal monatomic gas
The internal energy of a N-particle monatomic ideal gas is:
,
ln 3
2
V N
Q N
U
But U of a monatomic ideal gas is known to be:
,
ln 3
2
V N
Q
U NkT
8
9. Canonical partition function for ideal monatomic gas
Then:
1
kT
Note that is only a function of the thermal reservoir,
regardless of the system details. Therefore, this
identification is valid for any system.
9
10. Relationship of Q to thermodynamic properties
Then:
We showed that:
,
ln , ,
V N
Q V N
U E
2
,
ln
V N
Q
U kT
T
10
11. Relationship of Q to thermodynamic properties
Multiplying by kT2:
For a system with fixed number of particles N:
, ,
ln ln
ln
V N T N
Q Q
d Q dT dV
T V
2 2 2
, ,
ln ln
ln
V N T N
Q Q
kT d Q kT dT kT dV
T V
2 2
,
ln
ln
T N
Q
kT d Q UdT kT dV
V
11
12. Relationship of Q to thermodynamic properties
Combining:
But: 2
2
1
U U U
d dU dT UdT T d TdU
T T T T
dV
V
Q
kT
Q
d
kT
T
U
d
T
TdU
dV
V
Q
kT
Q
d
kT
T
U
d
T
TdU
dV
V
Q
kT
Q
d
kT
UdT
T
U
d
T
dT
T
Q
kT
TdU
T
U
d
T
UdT
TdU
N
T
N
T
N
T
N
V
,
2
2
2
,
2
2
2
,
2
2
2
,
2
2
ln
ln
ln
ln
ln
ln
ln
12
13. Therefore:
,
, ,
ln
ln
ln ln
ln
T N
V N T N
U Q
dU kTd Q kT dV
kT V
Q Q
kTd Q T kT dV
T V
13
14. Relationship of Q to thermodynamic properties
We identify that:
Comparing this result with:
dU TdS PdV
,
,
ln
ln
ln
T N
V N
Q
P kT
V
Q
dS kd Q T
T
14
15. Relationship of Q to thermodynamic properties
The entropy:
,
ln
ln
V N
Q
S Q T
T
The Helmholtz free energy:
, , ln , ,
A T V N kT Q T V N
2
, ,
ln ln
ln
V N V N
Q Q
A U TS kT kT Q T
T T
15
16. Relationship of Q to thermodynamic properties
The Helmholtz energy:
, , ln , ,
A T V N kT Q T V N
This is a very important equation – knowing the canonical
partition function is equivalent to having an expression for
the Helmholtz energy as function of temperature, volume
and number of molecules (or moles). From such
expression, it is possible to derive any thermodynamic
property
16
17. Relationship of Q to thermodynamic properties
The chemical potential of a pure substance:
The enthalpy:
, ,
, , ln , ,
T V T V
A T V N Q T V N
kT
N N
2
, ,
ln ln
V N T N
Q Q
H U PV kT kTV
T V
17
18. Relationship of Q to thermodynamic properties
Heat capacity at constant volume:
2
,
,
,
2
2
2
, ,
ln
ln ln
2
V N
V
V N
V N
V N V N
Q
kT
T
U
C
T T
Q Q
kT kT
T T
18
19. Relationship of Q to thermodynamic properties
The previous expression can also be written as:
2
2 2 2
2 2
, ,
,
2
V
V N V N
V N
kT Q kT Q kT Q
C
Q T Q T Q T
This form will be useful when discussing fluctuations, later
in this slide set
19
20. Thermodynamic properties of monatomic ideal
gases
The previous slides showed how to evaluate thermodynamic
properties given Q
It is time to discuss the effect of the electronic and nuclear
energy states to the single atom partition function before
proceeding with additional derivations
We will assume the Born-Oppenheimer approximation:
translational energy states are independent of the electronic
and nuclear states
Besides, we will assume the electronic and nuclear states are
independent of each other
20
21. Thermodynamic properties of monatomic ideal
gases
With these assumptions:
trans elec nuc
The single atom partition function is:
states of the atom
trans elec nuc
kT
q e
As discussed in the previous class for independent energy
modes:
trans elec nuc
q q q q
21
22. Thermodynamic properties of monoatomic ideal gases
In which:
,
translational states i
trans i
kT
trans
q e
,
electronic states i
elec i
kT
elec
q e
,
nuclear states i
nuc i
kT
nuc
q e
22
23. Thermodynamic properties of monatomic ideal
gases
3 2 3 2
2 2
2 2
trans
m m kT
q V V
h h
3
trans
V
q
2
2
h
m kT
De Broglie wavelength: based on dual
wave-particle nature of matter
23
25. Thermodynamic properties of monatomic ideal
gases
The electronic partition function:
,1 ,2 ,3
,1 ,2 ,3 ...
elec elec elec
kT kT kT
elec elec elec elec
q e e e
Additional information and approximations:
-The degeneracy of the ground energy level is equal to 1 in
noble gases, 2 in alkali metals, 3 in Oxygen;
-The ground energy level is the reference for the
calculations – it is conventional to set it to zero;
-The differences in electronic levels are high. For example,
argon:
,2 1521
elec
kJ
mol
At room T:
,2
450
0
elec
kT
e e
25
26. Thermodynamic properties of monatomic ideal
gases
Then, the electronic partition function is approximated as:
,1
elec elec
q
26
27. Thermodynamic properties of monatomic ideal
gases
The nuclear partition function:
The analysis is similar to that of the electronic partition function,
only that the energy levels are even farther apart.
It results:
,1
nuc nuc
q
Also, in situations of common interest to chemical engineers,
the atomic nucleus remains largely undisturbed. The nuclear
partition function becomes only a multiplicative factor that will
cancel out in calculations
27
28. Thermodynamic properties of monatomic ideal
gases
Compiling all these intermediate results:
trans elec nuc
q q q q
3 2
,1 ,1 2
2
elec nuc
m kT
q V
h
3 2
,1 ,1 2
2
! !
N
elec nuc
N
m kT
V
h
q
Q
N N
28
29. Thermodynamic properties of monatomic ideal
gases
For the monoatomic ideal gas, the logarithm of the
canonical partition function is:
3 2
,1 ,1 2
,1 ,1 2
2
ln ln ln
! !
3 2
ln ln ln ln ln !
2
N
elec nuc
N
elec nuc
m kT
V
h
q
Q
N N
m kT
N N N N V N
h
29
30. Thermodynamic properties of monatomic ideal
gases
Let us now use this expression to compute several
properties, beginning with the pressure:
,
ln
T N
Q NkT
P kT
V V
Av
R
k
N
Av Av
NkT NRT NRT
P PV
V N V N
where N is the number of molecules and Nav is Avogadro’s
number.
30
32. Thermodynamic properties of monatomic ideal
gases
PV nRT
We derived this very famous equation from very
fundamental principles – an amazing result
32
33. Thermodynamic properties of monatomic ideal
gases
Internal energy and heat capacity at constant volume:
2
,
ln
V N
Q
U kT
T
,1 ,1 2
3 2
ln ln ln ln ln ln !
2
elec nuc
m kT
Q N N N N V N
h
2 3 3
2 2
N
U kT NkT
T
,
3
2
V
V N
U
C Nk
T
These expressions are more complicated if excited energy
levels are taken into account – see eq. 3.4.12 and Problem
3.2 33
34. Thermodynamic properties of monatomic ideal
gases
Helmholtz energy:
Before obtaining its expression, let us introduce Stirling’s
approximation:
ln ! ln ln ln
N N N N N N N e
This approximation is increasingly accurate the larger N is. Since
N here represents the number of atoms, it is typically a very large
number and this approximation is excellent.
34
35. Thermodynamic properties of monatomic ideal
gases
Helmholtz energy:
3
2
,1 ,1
2
2
ln ln elec nuc
Ve
m kT
A kT Q NkT
h N
Ignoring the nuclear partition function by setting it equal to
1:
3
2
,1
2
2
ln ln elec
Ve
m kT
A kT Q NkT
h N
35
36. Thermodynamic properties of monatomic ideal
gases
Entropy:
U A
A U TS S
T
5
3
2
2
,1
2
2
ln elec
Ve
m kT
S Nk
h N
known as Sackur-Tetrode equation 36
37. Thermodynamic properties of monatomic ideal
gases
Chemical potential:
,
ln , ,
T V
Q T V N
kT
N
37
38. Thermodynamic properties of monatomic ideal gases
,1 ,1 2
,
,1 2
3 3
2 2
,1 ,1
2 2
3 2
ln ln ln ln ln
2
3 2
ln ln ln ln
2
2 2
ln ln
elec nuc
T V
elec
elec elec
m kT
N N N N V N N N
h
kT
N
m kT
kT V N
h
m kT V m kT kT
kT kT
h N h P
3
2
,1 2
0 0
3
2
,1 2
0 0
2
ln ln ln
2
ln ln
elec
elec
m kT kT kT kT
kT kT kT
h P P P
m kT kT P
kT kT
h P P
38
39. Thermodynamic properties of monatomic ideal
gases
Now compare this formula and the formula well-known to
chemical engineers of the chemical potential of a pure
ideal gas:
0
0
, , ln
P
T P T P kT
P
3
2
,1 2
0 0
2
ln ln
elec
m kT kT P
kT kT
h P P
39
40. Energy fluctuations in the canonical ensemble
In the canonical ensemble, the temperature, volume, and
number of molecules are fixed.
The energy may fluctuate. Assume its fluctuations follow a
Gaussian distribution:
2
1
2
1
2
x x
f x e
x
Mean of the distribution Standard deviation
x
f x
Variable Probability density
40
41. Energy fluctuations in the canonical ensemble
Given this distribution, the average value of any function
G(x) is calculated as follows:
2
1
2
1
2
x x
G f x G x dx e G x dx
The variance (standard deviation to power 2) is:
41
2 2 2 2
2 2 2 2
2 2
x x x xx x x xx x x x
2
x 2
x 2
x 2
x
42. Energy fluctuations in the canonical ensemble
Let us apply this formalism to the average energy and its
fluctuation:
3
3
2
2
E
E U NkT x
NkT
3
2
E
x
NkT
2 2
2 2 2
2
1
3
2
x x E E
NkT
42
2
E 2
E
43. Energy fluctuations in the canonical ensemble
2 2
2 2 2
2
1
3
2
x x E E
NkT
2
2
states i
2 states i
2 2
1
3
2
i
i
E
E
kT
kT
i
i
E e
E e
Q Q
NkT
43
45. Energy fluctuations in the canonical ensemble
2 2
2
2 2 2
2
2
2 2 2
, ,
,
1
2
3
2
V N V N
V N
kT kT
kT T
Q Q Q
Q T Q T Q T
NkT
2
2 2 2
2 2
, ,
,
2
V
V N V N
V N
kT Q kT Q kT Q
C
Q T Q T Q T
We previously found that:
45
46. Energy fluctuations in the canonical ensemble
The 2/3 factor is a particularity of using monoatomic ideal
gases as example. However, the factor is common
and shows that relative fluctuations decrease as the
number of molecules increases.
Comparing these two expressions:
2
2
2
2 2
3
2 1
2
3
3 3
2 2
V
kT Nk
kT C
N
NkT NkT
2 1
3 N
1 N
46
48. Gibbs entropy equation
But, using relationships developed in previous slides:
,
ln
ln
V N
Q
S Q T
T
2
, ,
states j
2
states j
,
ln 1
1 1
j
j
V N V N
E
kT
E
j
kT
V N
U Q Q
kT T Q T
e
E
e
Q T Q kT
48
49. Gibbs entropy equation
states j
states j
states j
, , ln , ,
ln ln , ,
, ,
1
ln , ,
, ,
ln , ,
j j
j
j j
E E
kT kT
E
kT
j
p N V E p N V E
e e Q N V T
Q N V T
E e
Q N V T
kT Q N V T
U
Q N V T
kT
49
Q
T
Q
T ln
ln
50. Gibbs entropy equation
Combining the expressions developed in the two previous
slides (algebra omitted here):
50
)
,
,
(
ln
)
,
,
(
ln
ln
,
j
statesj
j
N
V
E
V
N
p
E
V
N
p
k
T
Q
T
Q
k
S
51. Gibbs entropy equation
If there is only one possible state:
states j
, , ln , , 1 ln1 0
j j
S k p N V E p N V E k
If there are only two possible states, assumed to have
equal probability:
states j
1 1 1 1
, , ln , , ln ln 0.693
2 2 2 2
j j
S k p N V E p N V E k k
If there are only three possible states, assumed to have
equal probability:
1 1 1 1 1 1
ln ln ln 1.0986
3 3 3 3 3 3
S k k
51