The document discusses excretion and homeostasis in the body. It covers the roles of the liver and kidneys in excretion. The liver forms urea from excess amino acids and filters toxins from the bloodstream. The kidneys filter waste from the blood to form urine, selectively reabsorbing nutrients. Hormones regulate water reabsorption to maintain osmotic balance.

1. Biology – Communication, Homeostasis and Energy
Module 2 – Excretion
1) EXCRETION
Excretion is the removal of metabolic waste from the body, i.e. the removal of by-
products or unwanted substances from normal cell processes.
Almost any cell product formed in excess by the metabolic processes occurring must
be excreted. The main excretory products are carbon dioxide, a waste product of
respiration, and nitrogen-containing compounds, such as urea, which is
produced in the liver from excess amino acids.
How?
Carbon dioxide diffuses out of respiring cells into the surrounding tissue fluid and
eventually into the bloodstream. It travels in the blood (mostly in the form of
hydrogencarbonate ions) to the lungs, where it diffuses through the alveoli walls and
is expired.
Urea is formed when amino acids are deaminated in the liver. Deamination is the
removal of an amine group from an amino acid to produce ammonia. The urea
travels in the bloodstream to the kidneys (dissolved in the plasma), where it is
removed from the blood to form part of urine. It is then stored as urine in the bladder,
until it passes out of the body via the urethra.
Why?
Carbon dioxide in excess is toxic. A high level of carbon dioxide in the body has
three main negative effects:
1) A high proportion of carbon dioxide is carried in the blood as
hydrogencarbonate ions, which can form hydrogen ions. These hydrogen ions
compete with oxygen for haemoglobin, so too much carbon dioxide in the
blood leads to insufficient oxygen transport to respiring cells.
2) When carbon dioxide binds directly to haemoglobin (forming
carbaminohaemoglobin), it creates a molecule that has a lower affinity for
oxygen than haemoglobin itself.
3) Carbon dioxide in the blood plasma can combine with water to produce
carbonic acid, which then dissociates to produce hydrogen ions. Hydrogen
ions lower the pH of the blood, making it more acidic. If the blood pH falls
below 7.35, the results are slowed or difficult breathing, headache,

2. drowsiness, restlessness, tremor and confusion. This is known as respiratory
acidosis.
The body cannot store excess amino acids, however, it does not allow them to go
to waste. In the liver, amino acids are deaminated to form a keto acid and a highly
toxic compound, ammonia. The keto acid can be directly respired by cells under
aerobic conditions, or stored as a carbohydrate or fat after conversion. The
ammonia, on the other hand, being toxic, must be converted to a less toxic
substance, urea, which can be transported to the kidneys for excretion.
2) THE LIVER
Liver cells, or hepatocytes, carry out several hundred metabolic processes and the
organ itself plays an important role in maintaining homeostasis. It must have a very
rich supply of blood because of this, so the structure of the liver is arranged to allow
this.
The liver is supplied with blood from two sources:
- Oxygenated blood from the heart travels via the aorta to the hepatic artery,
then into the liver. This supplies the liver cells with much oxygen necessary
for aerobic respiration. Liver cells are very active, so require a lot of ATP
formed from aerobic respiration.
- Deoxygenated blood from the digestive system enters the liver via the
hepatic portal vein, which carries blood rich in digestive products. Since the
concentration of these products is uncontrolled thus far, the blood may
contain toxic compounds that have been absorbed by the intestine. All blood
leaves the liver via the hepatic vein, which joins the vena cava eventually.
The fourth vessel is not a blood vessel, but a bile duct, which carries bile (a
secretion from the liver) to the gall bladder, where it is stored until required to aid the
digestion of fats in the small intestine.
How are the cells arranged?
The liver is divided into lobes, which are further divided into cylindrical lobules. The
cells, blood vessels and chambers in the liver are all arranged to ensure the best
exchange of substances from and into the blood possible.
The hepatic artery and hepatic portal vein split into smaller and smaller vessels as
the run between, and parallel to, the lobules. They are known as inter-lobular
vessels. At intervals, branches from the hepatic artery and hepatic portal vein enter
the lobules, converging to form a sinusoid, which is lined by liver cells. The liver
cells are therefore able to remove molecules from the blood and pass molecules into

3. the blood. The sinusoids then empty into a branch of the hepatic vein, the intra-
lobular vessel. The branches of the hepatic vein from different lobules converge to
form the hepatic vein.
Bile is formed by the liver cells, and this is secreted into the bile canaliculus. These
converge to form the bile duct, which transports the bile to the gall bladder.
Kupffer cells are specialised macrophages that move around the sinusoids. They
are involved in the breakdown of aged red blood cells. One of the products of
haemoglobin breakdown is billirubin, which is excreted as part of the bile and in
faeces.
3) FUNCTIONS OF THE LIVER
The liver is involved in many metabolic functions, including:
- Control of: blood glucose levels, amino acid levels, lipid levels
- Synthesis of: red blood cells in fetus, bile, plasma proteins, cholesterol
- Storage of: vitamins A, D and B12, iron, glycogen
- Detoxification of: alcohol and drugs
- Breakdown of hormones
- Destruction of red blood cells
Forming Urea
We usually eat more than our required amount of protein, so, as it cannot be stored,
it must be excreted, as the amine groups are toxic. Proteins are deaminated which
produces ammonia, a highly toxic compound. It also produces a keto acid, which can
be directly respired or stored.
The ornithine cycle – ammonia must be converted to a less toxic form as quickly as
possible, so it is combined with carbon dioxide to produce urea. Urea is less toxic
than ammonia, and is passed back in the blood to travel to the kidneys.
Ammonia + Carbon Dioxide  Urea + Water

4. Detoxification
The liver is able to detoxify many compounds, some produced in the body (such as
hydrogen peroxide) and some consumed (such as alcohol). Toxins can be rendered
harmless by reduction, oxidation, methylation or combination with another molecule.
Since the liver is involved in detoxification, its cells contain many enzymes involved
in the detoxification of substances. Catalase is one such enzyme, which breaks
hydrogen peroxide down to harmless oxygen and carbon dioxide.
Detoxification of Alcohol
Alcohol, or ethanol, is an intoxicating drug that suppresses nervous activity.
However, it also contains chemical potential energy, which can be used in
respiration. It is broken down in the hepatocytes by the action of the enzyme ethanol
dehydrogenase. The resultant is ethanal, which is further dehydrogenated by the
enzyme ethanal dehydrogenase. The final compound is ethanoate (acetate), which
is combined with CoA to form acetyl CoA, which enters the Krebs cycle. In addition,
the hydrogen atoms released by the dehydrogenation reactions are used to reduce
NAD and FAD used in oxidative phosphorylation.
NAD is also required to oxidise and break down fatty acids, so if too much is being
used in the detoxification of alcohol, then the fatty acids are converted back to lipids
and stored in the liver cells, causing an enlarged liver. This can lead to alcohol-
related hepatitis or to cirrhosis.
4) THE KIDNEY
Most people have two kidneys, positioned both sides of the spine and just under the
lowest rib. Each kidney is supplied with blood from the renal artery and is drained by
a renal vein. The kidney removes waste products from the blood and produces
urine, which passes out of the kidney down the ureter to the bladder.
The kidney can be described as consisting of three regions, enclosed within a tough
capsule:
- The outer region, known as the cortex
- The inner region, known as the medulla
- The pelvis of the kidney, leading to the ureter.
Each kidney actually consists of tiny tubules, known as nephrons, which are
abundant and are associated with tiny capillaries. Each nephron begins in the cortex,
where they form a knot known as the glomerulus. This is surrounded by a cup-
shaped structure known as the Bowman’s capsule. The afferent arteriole carries
blood to the glomerular capillary, where it is pushed into the Bowman’s capsule

5. through the process of ultrafiltration. The capsule leads into the nephron, which is
divided into four parts:
- Proximal convoluted tube
- Loop of Henle
- Distal convoluted tube
- Collecting duct
As the fluid moves along the nephron, its composition is altered; achieved by
selective reabsorbtion of salts, water, etc. These substances are absorbed back
into the tissue fluid and blood capillaries surrounding the nephron tubule. The final
product in the collecting duct is urine.
How does the composition of the fluid change?
- In the proximal convolution, the fluid is altered by the reabsorbtion of all
sugars, most salts and some water. In total, around 85% of the fluid is
reabsorbed here.
- In the descending limb of the loop of Henle, the fluid’s water potential is
decreased by the addition of salts and the removal of water.
- In the ascending limb of the loop of Henle, the water potential is increased as
salts are removed by active transport.
- In the collecting duct, the water potential is decreased again by the removal of
water. This ensures that urine has a low water potential, so it has a higher
concentration of solutes than the blood or tissue fluid.
5) FORMATION OF URINE
The barrier between the blood in the capillary and the lumen of the Bowman’s
capsule consists of only three layers of cells:
- The capillary endothelium
- A basement membrane
- The Bowman’s capsule epithelial cells
The endothelium of the capillaries has narrow gaps between its cells to allow
ultrafiltration. They allow the blood plasma (and whatever is in solution in it) to pass
through. The basement membrane is a fine mesh of collagen fibres and
glycoproteins. These act as a filter, only allowing molecules with a relative molecular
mass of less than 69,000 to pass through. Thus, blood cells and proteins are held in
the capillaries. Finally, the epithelial cells of the Bowman’s capsule (known as
podocytes) have finger-like projections called major processes. These ensure that
there are gaps between cells, so that fluid from the blood in the glomerulus can pass
into the lumen of the Bowman’s capsule.

6. What is filtered?
- Water
- Amino acids
- Glucose
- Urea
- Inorganic ions (such as potassium, sodium and calcium).
This means that only blood cells and proteins are left in the capillary, and this causes
a very negative water potential. This low water potential enables the blood to
reabsorb water at a later stage.
The cells lining the proximal convolution are adapted to allow 85% of the filtrate to be
reabsorbed:
- Microvilli, formed by folding the cell surface membrane, increase the surface
area for reabsorbtion.
- The cell surface membrane also contains co-transporter proteins, which
transport glucose, amino acids and sodium ions out of the filtrate by facilitated
diffusion.
- The opposite membrane of the cell contains sodium-potassium ion pumps
that pump sodium ions out and potassium ions in. It is also folded to increase
its surface area.
- As much ATP is required, the cells lining the proximal convolution have many
mitochondria.
How?
- The sodium-potassium ion pumps remove sodium from the cells and thus
reduce the concentration of sodium ions in the cell cytoplasm.
- Glucose and amino acids are transported into the cello by facilitated diffusion,
which means that the concentrations of these substances rise inside the cell.
- The cell’s cytoplasm, because it now contains many solutes, has a lower
water potential than the filtrate in the tubule, so water diffuses into the cells by
osmosis.
- The water potential and concentrations of salts, glucose and amino acids are
lower in the tissue fluid surrounding the cells of the proximal convolution, so
the salts, glucose and amino acids diffuse into the tissue fluid by facilitated
diffusion, and water diffuses into the tissue fluid by osmosis.
- Larger molecules may be reabsorbed by endocytosis.

7. 6) WATER REABSORBTION
When the filtrate reaches the loop of Henle, there is about remaining. The
role of the loop of Henle is to create a low water potential in the tissue of the
medulla. This ensures that even more water can be reabsorbed from the filtrate in
the collecting duct.
The loop of Henle consists of a descending limb that descends into the medulla
and an ascending limb that ascends back out to the cortex. This arrangement
allows salts to be transferred from the ascending limb into the descending limb. The
overall effect is to increase the concentration of salts in the tubule fluid and
consequently they diffuse out into the surrounding medulla tissue fluid, giving it a
very low water potential.
As the tubule descends deeper into the medulla, its water potential begins to fall, due
to the loss of water by osmosis to the surrounding tissue fluid, and also the diffusion
of sodium and chloride ions into the tubule from the surrounding tissue fluid.
As the tubule ascends up the cortex, its water potential begins to rise, because:
- At the base of the tubule, sodium and chloride ions diffuse out of the tubule
into the tissue fluid.
- Higher up the tubule, sodium and chloride ions are actively transported out
into the tissue fluid.
- The wall of the ascending limb is impermeable to water, so water cannot
leave the tubule.

8. - The fluid loses salts, therefore, and no water as it moves up the ascending
limb.
The movement of salts from the ascending limb into the medulla creates a high salt
concentration in the tissue fluid of the medulla, so there is a very negative water
potential. This allows water to be reabsorbed in the distal convolution and the
collecting duct. The amount of water reabsorbed depends on the needs of the
body.
7) OSMOREGULATION
Osmoregulation is the control of water and salt levels in the body. To maintain an
osmotic balance for efficient cellular processes, the correct water potential must be
maintained between cells and surrounding tissue fluids.
Water is gained from food, drink and respiration.
Water is lost through urinating, sweating, exhaling water vapour, and in faeces.
Controlling the loss of water in the urine involves making the walls of the collecting
duct more or less permeable, depending on the body’s need. When less water needs
to be conserved, the walls of the collecting duct are less permeable, and vice versa.
The permeability of the collecting duct walls is influenced by the level of antidiuretic
hormone (ADH) in the blood stream. The cell surface membranes of the cells in the
wall contain receptors specific to ADH.
When ADH binds to these receptors, it activates a second messenger inside the cell,
which causes a chain of enzyme-catalysed reactions. The effect of these reactions is
to insert aquaporins (water-permeable protein channels) into the plasma
membrane. This makes the walls of the collecting duct more permeable to water,
thus allowing more to be reabsorbed and less to be passed out in urine.
Controlling the concentrations of ADH in the blood
Like many of the homeostatic functions, the hypothalamus controls the secretion of
ADH:
- Osmoreceptors in the hypothalamus respond to the effects of osmosis. When
the water potential is low, the osmoreceptors lose water by osmosis, causing
them to shrink.
- The shrinking of the receptors causes stimulation of neurosecretory cells,
which produce and secrete ADH. The ADH is manufactured in the cell body of
these cells, which lies in the hypothalamus. The ADH flows down to the
terminal bulb in the posterior pituitary gland, where it is stored until needed.

9. - When the neurosecretory cells are stimulated, they send action potentials
down their axons, which causes the secretion of ADH.
In order to ensure that ADH does not have a constant effect, it has a half-life of 20
minutes, so it is gradually broken down in the blood, slowing its effect on the
collecting duct’s walls.
8) KIDNEY FAILURE
Kidney failure occurs mostly due to diabetes mellitus, hypertension and infection.
Treatment
Dialysis is the most common treatment for kidney failure, and essentially bypasses
the kidney by removing wastes, excess fluid and salt from the blood by passing it
over a dialysis membrane. It is a partially permeable membrane that allows the
exchange of substances between the blood and the dialysis fluid. The fluid contains
the correct concentrations of salt, urea, water and other substances in the blood
plasma, so any substances in excess will diffuse across the membrane into the
dialysis fluid.
In haemodialysis, blood from a vein is passed through a dialysis machine that
contains a dialysis membrane. It is usually performed at a clinic three times a week
for several hours, however, it can be carried out at home.
In peritoneal dialysis, the filter is the body’s own abdominal membrane. A surgeon
must implant a tube in the abdomen into which dialysis solution is poured. After
several hours, the solution is drained from the abdomen. PD is performed several
times a day at home or work.
A kidney transplant is a less common treatment for kidney failure. A donor, usually
a family member, can donate one of their healthy kidneys to a patient in need of a
kidney transplant. A surgeon implants the new organ into the lower abdomen and
attaches it to the blood supplies and ureter. However, a patient’s body can see the
kidney as a foreign body and initiate an immune response against it. Because of this,
for the life of the organ, the patient must take immunosuppressant drugs.