This PPT is meant for undergraduate students to clear the concepts of Microbial metabolism.
The presentation includes the basics of catabolism and anabolism
Concepts in BiochemistryChapter 2Wendy Herndon, BIS, RDH, CDAlleneMcclendon878
Concepts in Biochemistry
Chapter 2
Wendy Herndon, BIS, RDH, CDA
Introduction
Dental professionals need to have a basic understanding of biochemistry
It is the foundation for understanding and applying the concepts of nutrition
What is Biochemistry?
It is the study of life at the molecular level
A molecule is:
The smallest particle of a substance that retains all the properties of the substance
A biomolecule is
Any molecule that is produced by a living cell or organism
https://www.youtube.com/watch?v=YO244P1e9QM
Metabolism involves
Production and use of energy which can come from dietary carbs, proteins, and lipids
Bioinformation involves
The transfer of biological information from DNA to RNA to protein which carries out all of the processes of life
DNA is deoxyribonucleic acid
RNA is Ribonucleic acid
3
Fundamentals
Atoms are:
Made of three tiny particles called:
Protons
Neutrons
Electrons
An atom itself is made up of three tiny kinds of particles called subatomic particles: protons, neutrons, and electrons. The protons and the neutrons make up the center of the atom called the nucleus and the electrons fly around above the nucleus in a small cloud. All matter is made up of atoms.
4
Fundamentals
Molecules are:
A group of atoms bonded together
An example is when two atoms of hydrogen bond with one atom of oxygen, it forms a water molecule
A molecule is a group of atoms bonded together
5
Fundamentals
The mass of the human body is made of atoms which form molecules (groups of atoms)
Molecules form cells (made up of billions of molecules)
Cells form tissues
Tissues form organs
Organs work together to form systems
Systems form organisms such as a human
Atomic Bonds
Ionic
Ionic bonds form between a positively charged metal and a negatively charged non-metal
An example of an ionic bond is the hydroxyapatite in enamel which is composed of ionic bonds between calcium and phosphate
Atomic Bonds
Covalent
-A covalent bond occurs when two non-metal atoms equally share electrons
-An example of this would be when nitrogen and oxygen bond together to form nitrous oxide
-Laughing gas
Carbon
Element
Carbon is the fourth most abundant element in the universe and is the building block of life on earth
Cells are made of many complex molecules called macromolecules
These include proteins, nucleic acids (RNA and DNA), carbohydrates, and lipids
The carbon atom has unique properties that allow it to form covalent bonds to as many as four different atoms, making this versatile element ideal to serve as the basic structural component, or “backbone,” of the macromolecules (many complex molecules)
Main Biomolecules in Nutrition
(any molecule formed by a living cell or organism)
The four major biomolecules are:
Carbohydrates
Lipids
Proteins
Nucleic acids
These biomolecules are characterized by the type of polymer or monomer they contain and by their function
A polymer is a large molecule containing repeating units kn ...
This PPT is meant for undergraduate students to clear the concepts of Microbial metabolism.
The presentation includes the basics of catabolism and anabolism
Concepts in BiochemistryChapter 2Wendy Herndon, BIS, RDH, CDAlleneMcclendon878
Concepts in Biochemistry
Chapter 2
Wendy Herndon, BIS, RDH, CDA
Introduction
Dental professionals need to have a basic understanding of biochemistry
It is the foundation for understanding and applying the concepts of nutrition
What is Biochemistry?
It is the study of life at the molecular level
A molecule is:
The smallest particle of a substance that retains all the properties of the substance
A biomolecule is
Any molecule that is produced by a living cell or organism
https://www.youtube.com/watch?v=YO244P1e9QM
Metabolism involves
Production and use of energy which can come from dietary carbs, proteins, and lipids
Bioinformation involves
The transfer of biological information from DNA to RNA to protein which carries out all of the processes of life
DNA is deoxyribonucleic acid
RNA is Ribonucleic acid
3
Fundamentals
Atoms are:
Made of three tiny particles called:
Protons
Neutrons
Electrons
An atom itself is made up of three tiny kinds of particles called subatomic particles: protons, neutrons, and electrons. The protons and the neutrons make up the center of the atom called the nucleus and the electrons fly around above the nucleus in a small cloud. All matter is made up of atoms.
4
Fundamentals
Molecules are:
A group of atoms bonded together
An example is when two atoms of hydrogen bond with one atom of oxygen, it forms a water molecule
A molecule is a group of atoms bonded together
5
Fundamentals
The mass of the human body is made of atoms which form molecules (groups of atoms)
Molecules form cells (made up of billions of molecules)
Cells form tissues
Tissues form organs
Organs work together to form systems
Systems form organisms such as a human
Atomic Bonds
Ionic
Ionic bonds form between a positively charged metal and a negatively charged non-metal
An example of an ionic bond is the hydroxyapatite in enamel which is composed of ionic bonds between calcium and phosphate
Atomic Bonds
Covalent
-A covalent bond occurs when two non-metal atoms equally share electrons
-An example of this would be when nitrogen and oxygen bond together to form nitrous oxide
-Laughing gas
Carbon
Element
Carbon is the fourth most abundant element in the universe and is the building block of life on earth
Cells are made of many complex molecules called macromolecules
These include proteins, nucleic acids (RNA and DNA), carbohydrates, and lipids
The carbon atom has unique properties that allow it to form covalent bonds to as many as four different atoms, making this versatile element ideal to serve as the basic structural component, or “backbone,” of the macromolecules (many complex molecules)
Main Biomolecules in Nutrition
(any molecule formed by a living cell or organism)
The four major biomolecules are:
Carbohydrates
Lipids
Proteins
Nucleic acids
These biomolecules are characterized by the type of polymer or monomer they contain and by their function
A polymer is a large molecule containing repeating units kn ...
Bio 103 lecture 11_metbolism, enzymes, & respirationRizvan Farid
It is very useful for biology student. It'll increase your knowledge. A lot pictures and content is added in the slides. Try to understand and feel the contents and materials in the slides.
Fat usually means any ester of fatty acids or mixture of such compounds most commonly those that occur in living beings or in food. Fat is used as the fatty components of foods and diet. Fats are best known members of a chemical group called the lipids.
Content
Classification
Functions
Sources
Digestion
Absorption
Deficiency and disorders of lipids
Essential fatty acid
Role of omega-3 & omega 6 fatty acids in physiological disorders
References
Bio 103 lecture 11_metbolism, enzymes, & respirationRizvan Farid
It is very useful for biology student. It'll increase your knowledge. A lot pictures and content is added in the slides. Try to understand and feel the contents and materials in the slides.
Fat usually means any ester of fatty acids or mixture of such compounds most commonly those that occur in living beings or in food. Fat is used as the fatty components of foods and diet. Fats are best known members of a chemical group called the lipids.
Content
Classification
Functions
Sources
Digestion
Absorption
Deficiency and disorders of lipids
Essential fatty acid
Role of omega-3 & omega 6 fatty acids in physiological disorders
References
FAIRSpectra - Towards a common data file format for SIMS imagesAlex Henderson
Presentation from the 101st IUVSTA Workshop on High performance SIMS instrumentation and machine learning / artificial intelligence methods for complex data.
This presentation describes the issues relating to storing and sharing data from Secondary Ion Mass Spectrometry experiments, and some potential solutions.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
We present you a part of our Tampere University's team - FHAIVE!
Besides producing excellent science, they are in charge or coordinating this project as well Tampere University, Faculty of Medicine and Health Technology.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Gliese 12 b: A Temperate Earth-sized Planet at 12 pc Ideal for Atmospheric Tr...Sérgio Sacani
Recent discoveries of Earth-sized planets transiting nearby M dwarfs have made it possible to characterize the
atmospheres of terrestrial planets via follow-up spectroscopic observations. However, the number of such planets
receiving low insolation is still small, limiting our ability to understand the diversity of the atmospheric
composition and climates of temperate terrestrial planets. We report the discovery of an Earth-sized planet
transiting the nearby (12 pc) inactive M3.0 dwarf Gliese 12 (TOI-6251) with an orbital period (Porb) of 12.76 days.
The planet, Gliese 12 b, was initially identified as a candidate with an ambiguous Porb from TESS data. We
confirmed the transit signal and Porb using ground-based photometry with MuSCAT2 and MuSCAT3, and
validated the planetary nature of the signal using high-resolution images from Gemini/NIRI and Keck/NIRC2 as
well as radial velocity (RV) measurements from the InfraRed Doppler instrument on the Subaru 8.2 m telescope
and from CARMENES on the CAHA 3.5 m telescope. X-ray observations with XMM-Newton showed the host
star is inactive, with an X-ray-to-bolometric luminosity ratio of log 5.7 L L X bol » - . Joint analysis of the light
curves and RV measurements revealed that Gliese 12 b has a radius of 0.96 ± 0.05 R⊕,a3σ mass upper limit of
3.9 M⊕, and an equilibrium temperature of 315 ± 6 K assuming zero albedo. The transmission spectroscopy metric
(TSM) value of Gliese 12 b is close to the TSM values of the TRAPPIST-1 planets, adding Gliese 12 b to the small
list of potentially terrestrial, temperate planets amenable to atmospheric characterization with JWST.
Gliese 12 b, a temperate Earth-sized planet at 12 parsecs discovered with TES...Sérgio Sacani
We report on the discovery of Gliese 12 b, the nearest transiting temperate, Earth-sized planet found to date. Gliese 12 is a
bright (V = 12.6 mag, K = 7.8 mag) metal-poor M4V star only 12.162 ± 0.005 pc away from the Solar system with one of the
lowest stellar activity levels known for M-dwarfs. A planet candidate was detected by TESS based on only 3 transits in sectors
42, 43, and 57, with an ambiguity in the orbital period due to observational gaps. We performed follow-up transit observations
with CHEOPS and ground-based photometry with MINERVA-Australis, SPECULOOS, and Purple Mountain Observatory,
as well as further TESS observations in sector 70. We statistically validate Gliese 12 b as a planet with an orbital period of
12.76144 ± 0.00006 d and a radius of 1.0 ± 0.1 R⊕, resulting in an equilibrium temperature of ∼315 K. Gliese 12 b has excellent
future prospects for precise mass measurement, which may inform how planetary internal structure is affected by the stellar
compositional environment. Gliese 12 b also represents one of the best targets to study whether Earth-like planets orbiting cool
stars can retain their atmospheres, a crucial step to advance our understanding of habitability on Earth and across the galaxy.
15. • A metabolite is a substance that is created or used when the body breaks down food, drugs,
chemicals, or its own tissue.
• Metabolites are usually small molecules that act as intermediates or end products of
metabolism
16. Endothermic means absorbing heat from its surroundings
Exothermic means a process or reaction that releases energy usually in the form of heat
17. Nicotinamide adenine dinucleotide phosphate (NADPH) is a biological carrier of electrons that functions
as a coenzyme in all living organisms
23. Ketones are a type of chemical that your liver produces
when it breaks down fats. Your body uses ketones for
energy typically during fasting, long periods of exercise, or
when you don't have as many carbohydrates