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NANOPARTICLE IN
DETECTION OF PROTEINS
AND SINGLE MOLECULES
BARCODEBARCODE: A barcode is an optical machine-readable representation 
of  data, which shows data about the object to which it attaches.
Originally, barcodes represented data by varying the widths and spacings
of parallel lines, and may be referred to as linear or 1 dimensional (1D),
rectangular or geomatrical shapes (2D). 3D barcode uses the height of the
line to represent a product.
1D 2D 3D
DNA barcode
• DNA barcoding is a taxonomic method that
uses a short genetic marker in an organism's
DNA to identify it as belonging to a
particular species.
The  basic  concept  of  bar-code  DNA.  It  carries 
with  it  a  large  number  of  oligonucleotides  per 
protein  binding  event,  there  is  substantial 
amplification  and  one  can  detect  PSA  at  30 
attomolar concentration.
  Alternatively,  one  can  do  polymerase  chain 
reaction  on  the  oligonucleotide  barcodes  and 
boost the sensitivity to 3 attomolar. 
http://ho.seas.ucla.edu/wp-content/uploads/2011/04/Wei_Ho_PediatricResearch2010_review.pdf
TheDNA-BCAassay.
Bio-Bar-Code-Based DNA Detection with PCR-like Sensitivity J. AM. CHEM. SOC. 2004, 126, 5932-5933
Ho et al., 2005. Multiplexed Hybridization Detection with Multi color
Colocalization of Quantum Dot Nanoprobes. Nano Lett., Vol. 5, No. 9, 2005
Sequences of the Three Anthrax-Related Targets (rpoB, capC,
and pagA) and Their Associated Oligonucleotide Probes.
Simulated multiplexed analysis of anthrax-related genetic targets for pathogenicity: (a) color pallet for the three
pairs of targetspecific QD nanoprobes and their resulting colocalized fluorescent images upon sandwich
hybridization;
(b) four samples containing different combinations of the three targets, rpoB, capC, and pagA. Checks represent
the existence of certain target sequences. Sample IV does not
contain any target and is used as a negative control.
(c) Fluorescent images I, II, III, and IV correlate with samples I, II, III, and IV, respectively.
Programmed Assembly of DNA-Functionalized Nanoparticles
Magnetic Particle
Probe
Target Protein
Nanoparticle Probe
with Barcode DNA
Separation using
magnetic field &
Bardcode DNA
dehybridization
Barcode DNA
Signal Amplification
by PCR
Chip based detection of Barcode DNA
a : complementary capture DNA
b : non complementary capture DNA
atto molar detection!!atto molar detection!!
Nanoparticle-Base Bio-BarcodesNanoparticle-Base Bio-Barcodes
Ultrasensitive Protein Detection
 The system is based on magnetic microparticle probes with antibodies that
specifically bind a target of interest [prostate specific antigen (PSA), amyloid
beta oligomer] and nanoparticle probes that are encoded with DNA that is
unique to the protein target of interest and antibodies that can sandwich the
target captured by the microparticle probes .
 Magnetic separation of the complexed probes and target followed by
dehybridization of the oligonucleotides on the nanoparticle probe surface
allows one to determine the presence of the target protein by identifying the
oligonucleotide sequence released from the nanoparticle probe
Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive
Detection of Proteins
Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive
Detection of Proteins
Nam et al., Science, 301, 1884-1886, 2003
BIOBARCODE
BIOBARCODE
BIOBARCODE
BIOBARCODE
BIOBARCODE

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BIOBARCODE

  • 1. NANOPARTICLE IN DETECTION OF PROTEINS AND SINGLE MOLECULES
  • 2. BARCODEBARCODE: A barcode is an optical machine-readable representation  of  data, which shows data about the object to which it attaches. Originally, barcodes represented data by varying the widths and spacings of parallel lines, and may be referred to as linear or 1 dimensional (1D), rectangular or geomatrical shapes (2D). 3D barcode uses the height of the line to represent a product. 1D 2D 3D
  • 3. DNA barcode • DNA barcoding is a taxonomic method that uses a short genetic marker in an organism's DNA to identify it as belonging to a particular species.
  • 4. The  basic  concept  of  bar-code  DNA.  It  carries  with  it  a  large  number  of  oligonucleotides  per  protein  binding  event,  there  is  substantial  amplification  and  one  can  detect  PSA  at  30  attomolar concentration.   Alternatively,  one  can  do  polymerase  chain  reaction  on  the  oligonucleotide  barcodes  and  boost the sensitivity to 3 attomolar. 
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  • 8.
  • 9. TheDNA-BCAassay. Bio-Bar-Code-Based DNA Detection with PCR-like Sensitivity J. AM. CHEM. SOC. 2004, 126, 5932-5933
  • 10.
  • 11. Ho et al., 2005. Multiplexed Hybridization Detection with Multi color Colocalization of Quantum Dot Nanoprobes. Nano Lett., Vol. 5, No. 9, 2005
  • 12. Sequences of the Three Anthrax-Related Targets (rpoB, capC, and pagA) and Their Associated Oligonucleotide Probes.
  • 13. Simulated multiplexed analysis of anthrax-related genetic targets for pathogenicity: (a) color pallet for the three pairs of targetspecific QD nanoprobes and their resulting colocalized fluorescent images upon sandwich hybridization; (b) four samples containing different combinations of the three targets, rpoB, capC, and pagA. Checks represent the existence of certain target sequences. Sample IV does not contain any target and is used as a negative control. (c) Fluorescent images I, II, III, and IV correlate with samples I, II, III, and IV, respectively.
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  • 15. Programmed Assembly of DNA-Functionalized Nanoparticles
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  • 17. Magnetic Particle Probe Target Protein Nanoparticle Probe with Barcode DNA Separation using magnetic field & Bardcode DNA dehybridization Barcode DNA Signal Amplification by PCR Chip based detection of Barcode DNA a : complementary capture DNA b : non complementary capture DNA atto molar detection!!atto molar detection!! Nanoparticle-Base Bio-BarcodesNanoparticle-Base Bio-Barcodes Ultrasensitive Protein Detection
  • 18.  The system is based on magnetic microparticle probes with antibodies that specifically bind a target of interest [prostate specific antigen (PSA), amyloid beta oligomer] and nanoparticle probes that are encoded with DNA that is unique to the protein target of interest and antibodies that can sandwich the target captured by the microparticle probes .  Magnetic separation of the complexed probes and target followed by dehybridization of the oligonucleotides on the nanoparticle probe surface allows one to determine the presence of the target protein by identifying the oligonucleotide sequence released from the nanoparticle probe Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive Detection of Proteins
  • 19. Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive Detection of Proteins Nam et al., Science, 301, 1884-1886, 2003