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IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
__________________________________________________________________________________________
Volume: 03 Issue: 05 | May-2014, Available @ http://www.ijret.org 267
APPLICATION OF GENETIC ALGORITHM FOR LIVER CANCER
DETECTION
Yamini Upadhyay1
; Vikas Wasson2
Abstract
Human life is the most precious and valuable gift of God. The internal structure of human body is complex and weird. When there is
any medical complication or problem it gets very important for doctor to analyze it correctly. X ray, CT and MRI images help doctor
in this analysis. Cancer is a prominent reason for deaths in India. The cancer can be detected in human body through MRI images but
it gets difficult to correctly analyze it due to the reason of having almost same intensity of the images of other body parts. A better
system has to be find for the segmentation of liver from MRI images so that it can be identified clearly from the adjacent organs which
have similar intensity. Also livers geometry is very complex due to its high anatomical variability both in health and disease. In this
paper we will present different techniques for segmentation and will design a method for liver segmentation and cancer detection.
Keyword: Liver Segmentation, Genetic algorithm, MRI, Threshold based approaches. CBIR, Contour, Histogram
-----------------------------------------------------------------------***----------------------------------------------------------------------
1. INTRODUCTION
There is a dire need to design and implement a quick
responsive and exact calculative liver segmentation method
for medical image analysis. For the need of computer aid in
diagnoses, Liver segmentation is an important tool, it helps to
evaluate the methodology and pros and cons of liver
transplantation and the treatment method of liver tumors.
Magnetic resonance imaging is comparatively a better method
because it is free of ionizing radiation and also provides a
good contrast visualization of soft tissue [2].There are a
number of techniques for liver segmentation that include
Region Growing, Threshold based, Level Set method,
Statistical model, Active Contour, Clustering algorithm,
Histogram based approach and Gray level methods, Genetic
algorithm.
2. LITERATURE SURVEY
Due to the similar intensity of the organs and the complex
geometry of the liver, it gets difficult to detect the cancer in
the MRI of liver. There are also some artifacts of pulsation
and motion, and partial volume effects due to different factors
that make automatic liver segmentation difficult. The CT
images show gray values in an abdominal image, which range
between 90-92 out of 0-255 for a normal tumor free liver,
whereas if there is tumor the range is not clear and the images
show darker grey values. The pre existing methods which use
the basic location and distribution location information of the
general gray scale values of the image. There is a dire need to
design and implement a quick responsive and exact calculative
liver segmentation method for medical image analysis. For the
need of computer aid in diagnoses, Liver segmentation is an
important tool, it helps to evaluate the methodology and pros
and cons of liver transplantation and the treatment method of
liver tumors. Magnetic resonance imaging is comparatively a
better method because it is free of ionizing radiation and also
provides a good contrast visualization of soft tissue [2]
2.1 Region based Approaches
This method provides better results on contrast enhanced
images. It uses a small region as seed point and progresses
with the addition to the surrounding pixels, which will match
the developed region in terms of the intensity. This process
will end with the reception of the segmented area [3].
2.2 Threshold based Approaches
Due to the variation of liver intensity in CT images, it
becomes difficult to use fixed threshold method. The liver
segmentation using adaptive threshold technique should be
used. The technique helps to use different threshold for
different regions in the image [3].
2.3 Level Set Approach
This method can handle topological changes and define the
problem in higher dimension, but this method is time
consuming and results in over segmentation. The
Segmentation using level set method that evolves according to
a speed image that is the result of a scanning technique based
dynamic programming. The main limitations is level set
method adjusts this first segmentation using a speed function
obtained from a pixel classification algorithm. The accuracy is
only sufficient in a small number of cases [3].
2.4 Model based Approach
The statistical shape model based method has the best
performance among all the approaches in the grand challenge
IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
__________________________________________________________________________________________
Volume: 03 Issue: 05 | May-2014, Available @ http://www.ijret.org 268
workshop. This type of method uses Statistical Shape Model
(SSM) that includes shape correspondence, shape
representation, and search algorithms [3]. The drawback of the
SSM method is that, it do not ensure better output until the
dataset is large. Just in the same way, though most of the
applications use contour based approach, but segmentation is
for preprocessing, but when the content based image retrieval
(CBIR) method is used, the time taken is more.
2.5 Active Contour based Approach
This image is based on the enhancing and denoising on the
basis of filter. The filters can be based on chevshev or
histogram equalization or anisotropic diffusion. It is based on
the semi automatic segmentation of the liver for which
different techniques can be used, GVF snake method is one of
those techniques. Hermite-spline curve method is then implied
to connect the manually selected points and thus the edges of
the segmented area are designed using the edge detector [3].
2.6 Gray Level based Approach
An adaptive hybrid segmentation algorithm using Bayesian
classification on volume intensities, the process is initiated by
selecting any random pixel in the liver image. Of the adjoining
rectangular area around this pixel the values of variance &
mean are determined. Then, a voxel classification with a
smoothed MAP rule is applied to produce a segmentation label
map [3].
2.7 Generic Algorithm
Genetic algorithms are optimization techniques inspired by
natural evolution. In GA, solutions of an optimization problem
are encoded as binary strings. After Generating a first set of
random solutions, these can be improved by iteratively
applying operators, termed selection, crossover and mutation,
that mimic the corresponding processes of natural evolution.
In fact, selection lets only the fittest individuals (best
solutions, according to some goodness criteria or ’fitness
function’) be present in the next generation (iteration of the
algorithm); crossover lets them exchange tracts of their DNA
(corresponding substrings) to generate offspring (new
solutions), while mutation randomly introduces new genes (by
flipping one or more bits of a solution). Genetic algorithm
(GA) is a computing model which mainly simulates biological
heredity, mutation of evolutionary process in the nature and
manifests thoughts through selection, crossover and mutation
operators. Its main characteristics are the searching strategy,
exchanging of information between individuals in a group. It
is particularly appropriate for complex and nonlinear problems
which were difficult to be resolve dealing with traditional
methods, demonstrates its unique charm in combinatorial
optimization, adaptive control, artificial life and other
application areas. It is one of the intelligent computing
technologies.
3. PROBLEM DEFINITION AND OBJECTIVES
It is important to detect and then analyse the root cell in the
MRI images, so that the correct diagnosis and treatment can be
decided. To implement this problem it is important to use
segmentation of the liver images[7].This is the objective of the
dissertation. Development of medical imaging technologies
has made it a necessity to analyze patient datasets before
taking any decision on treatment planning.
 The manual segmentation of the liver parenchyma is
extremely laborious [10].
 Existing methods are cost intensive [5].
 Most of existing methods are time consuming [3].
3.1 Objectives
Development of medical imaging technologies has made it a
necessity to analyze patient datasets before taking any
decision on treatment planning. In case of liver, its size,
volume, and shape; structure of its vessels; and tumors sizes
and locations are important. The main objective includes:
 Acquire an image and perform pre-processing.
 Find Region of Interest (ROI) and perform
segmentation with algorithm to be proposed.
 Compare performance of proposed algorithm with
existing technique.
4. METHODOLOGY
In this review paper a technique for the segmentation of liver
is to be opted. The methodology opted is that, a liver image
will be selected, after that noise will be added to the image and
then the image will be denoised. The region of interest(ROI)
will be selected out of the denoised by making the fuzzy coded
binary map. The binary map values are selected and their
inverse is mixed with denoised values. These values are then
given to an empty matrix, this results as segmented liver
images. Out of the selected region of the segmented MRI
image, using GA the cancer can be detected.
4.1 Genetic Algorithm Based Clustering
Genetic algorithm is based upon a simple principle of survival
of the fittest. It uses clustering technique [11]. A cluster of
pixels is taken. Genetic algorithm using a number of pixels is
explained as:
1. First of all a chromosome is encoded using real, or binary
numbers.
2. Then taking the values from the data set, clusters are
defined and out of those the central cluster is initialized, which
results as the population initialization.
3. Genetic algorithm represents the survival of the fittest. We
define Davies Boulin index that is the ratio of sum of cluster
separation within a cluster and between different clusters.
4. Then out of the existing population the fittest is selected to
breed and generate the new generations.
IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
__________________________________________________________________________________________
Volume: 03 Issue: 05 | May-2014, Available @ http://www.ijret.org 269
5. After this the crossover is done using stochastic method,
from which the parents and child clusters are generated.
6. After which the valid and best fitted genes in chromosomes
are mutated with a probability µc
7. After a number of iterations, a suitable gene is preserved in
a location outside the population with maximum fitness
contains the centers of the final cluster.
5. CONCLUSIONS
The best opted method out of all the methods discussed in
literature review is genetic algorithm, the choice may vary
from user to user. The methodology explains that, a liver
image will be selected, after that noise will be added to the
image and then the image will be denoised. The region of
interest(ROI) will be selected out of the denoised by making
the fuzzy coded binary map. The binary map values are
selected and their inverse is mixed with denoised values.
These values are then given to an empty matrix, this results as
segmented liver images. Out of the selected region of the
segmented MRI image, using GA the cancer can be detected.
REFERENCES
[1] Pedro Rodrigues, Joao L. Vilaca and Jaime Fonseca,
“An Image Processing Application for Liver Tumour
Segmentation”, IEEE, FEBRUARY 2011.
[2] Evgin Goceri, Mehmet Z. Unlu, Cuneyt Guzelis and
Oguz Dicle, “An Automatic Level Set Based Liver
Segmentation from MRI Data Sets”, IEEE, 2012.
[3] S. Priyadarshni and Dr. D. Selvathi, “Survey on
Segmentation of Liver from CT Images”, IEEE, 2012.
[4] Angelina. S, L. Padma Suresh and S. H. Krishna Veni,
“Image Segmentation Based On Genetic Algorithm for
Region Growth and Region Merging”, IEEE, 2012.
[5] Ying Li, Yan-Ning Zhang, Ying-Lei Cheng, Rong-
Chun Zhao and Gui-Sheng Liao, “An Effective Method
For Image Segmentation”, IEEE, 2005.
[6] S. Cagnoni, A. B. Dobrzeniecki, J. C. Yanch and R.
Poli, “Interactive Segmentation of Multi-Dimensional
Medical Data With Contour-Based Application of
Genetic Algorithms”, IEEE, 1994.
[7] Consuelo Cruz-Gomez, Petra Wiederhold and Marco
Gudino-Zayas, “Automatic Liver Tissue Segmentation
in Microscopic Images Using Fusion Color Space and
Multiscale Morphological Reconstruction”, IEEE,
2013.
[8] Jie Lu, Lin Shi, Min Deng, Simon C.H. YU and Pheng
Ann Heng, “An Interactive Approoach To Liver
Segmentation in CT Based on Deformable Model
Integrated With Attractor Force”, IEEE, 2011.
[9] Amir H. Foruzan, Yen-Wei Chen, Reza A. Zoroofi,
Akira Furukawa, Yoshinobu Sato and Masatoshi Hori,
“Multi-mode Narrow-band Thresholding with
Application in Liver Segmentation from Low-contrast
CT Images”, IEEE, 2009.
[10] Jie Lu, Defeng Wang, Lin Shi and Pheng Ann Heng,
“Automatic Liver Segmentation in CT Images based on
Support Vector Machine”, IEEE, 2012.
[11] Mridula J and Dipti Patra, “Genetic Algorithm based
Segmentation of High Resolution Multispectral Images
using GMRF Model”, IEEE, 2010.
[12] Jiang Hua Wei and Yang Kai, “Research of Improved
Genetic Algorithm for Thresholding Image
Segmentation Based on Maximum Entropy”, IEEE,
2010.
[13] S. S. Kumar and Dr. R. S. Moni, “Diagnosis of Liver
Tumour from CT Images Using Fast Discrete Curvelet
Transform”, IJCA, 2010.
[14] N. Gopinath, “ Extraction of Cancer Cells From MRI
Prostate Image Using MATLAB”, IJESIT, 2012.
[15] M. A. Ansari and R. S. Anand, “Region Based
Segmenattion and Image Analysis with Application to
Medical Imaging”, ICTES, 2007.

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Application of genetic algorithm for liver cancer detection

  • 1. IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308 __________________________________________________________________________________________ Volume: 03 Issue: 05 | May-2014, Available @ http://www.ijret.org 267 APPLICATION OF GENETIC ALGORITHM FOR LIVER CANCER DETECTION Yamini Upadhyay1 ; Vikas Wasson2 Abstract Human life is the most precious and valuable gift of God. The internal structure of human body is complex and weird. When there is any medical complication or problem it gets very important for doctor to analyze it correctly. X ray, CT and MRI images help doctor in this analysis. Cancer is a prominent reason for deaths in India. The cancer can be detected in human body through MRI images but it gets difficult to correctly analyze it due to the reason of having almost same intensity of the images of other body parts. A better system has to be find for the segmentation of liver from MRI images so that it can be identified clearly from the adjacent organs which have similar intensity. Also livers geometry is very complex due to its high anatomical variability both in health and disease. In this paper we will present different techniques for segmentation and will design a method for liver segmentation and cancer detection. Keyword: Liver Segmentation, Genetic algorithm, MRI, Threshold based approaches. CBIR, Contour, Histogram -----------------------------------------------------------------------***---------------------------------------------------------------------- 1. INTRODUCTION There is a dire need to design and implement a quick responsive and exact calculative liver segmentation method for medical image analysis. For the need of computer aid in diagnoses, Liver segmentation is an important tool, it helps to evaluate the methodology and pros and cons of liver transplantation and the treatment method of liver tumors. Magnetic resonance imaging is comparatively a better method because it is free of ionizing radiation and also provides a good contrast visualization of soft tissue [2].There are a number of techniques for liver segmentation that include Region Growing, Threshold based, Level Set method, Statistical model, Active Contour, Clustering algorithm, Histogram based approach and Gray level methods, Genetic algorithm. 2. LITERATURE SURVEY Due to the similar intensity of the organs and the complex geometry of the liver, it gets difficult to detect the cancer in the MRI of liver. There are also some artifacts of pulsation and motion, and partial volume effects due to different factors that make automatic liver segmentation difficult. The CT images show gray values in an abdominal image, which range between 90-92 out of 0-255 for a normal tumor free liver, whereas if there is tumor the range is not clear and the images show darker grey values. The pre existing methods which use the basic location and distribution location information of the general gray scale values of the image. There is a dire need to design and implement a quick responsive and exact calculative liver segmentation method for medical image analysis. For the need of computer aid in diagnoses, Liver segmentation is an important tool, it helps to evaluate the methodology and pros and cons of liver transplantation and the treatment method of liver tumors. Magnetic resonance imaging is comparatively a better method because it is free of ionizing radiation and also provides a good contrast visualization of soft tissue [2] 2.1 Region based Approaches This method provides better results on contrast enhanced images. It uses a small region as seed point and progresses with the addition to the surrounding pixels, which will match the developed region in terms of the intensity. This process will end with the reception of the segmented area [3]. 2.2 Threshold based Approaches Due to the variation of liver intensity in CT images, it becomes difficult to use fixed threshold method. The liver segmentation using adaptive threshold technique should be used. The technique helps to use different threshold for different regions in the image [3]. 2.3 Level Set Approach This method can handle topological changes and define the problem in higher dimension, but this method is time consuming and results in over segmentation. The Segmentation using level set method that evolves according to a speed image that is the result of a scanning technique based dynamic programming. The main limitations is level set method adjusts this first segmentation using a speed function obtained from a pixel classification algorithm. The accuracy is only sufficient in a small number of cases [3]. 2.4 Model based Approach The statistical shape model based method has the best performance among all the approaches in the grand challenge
  • 2. IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308 __________________________________________________________________________________________ Volume: 03 Issue: 05 | May-2014, Available @ http://www.ijret.org 268 workshop. This type of method uses Statistical Shape Model (SSM) that includes shape correspondence, shape representation, and search algorithms [3]. The drawback of the SSM method is that, it do not ensure better output until the dataset is large. Just in the same way, though most of the applications use contour based approach, but segmentation is for preprocessing, but when the content based image retrieval (CBIR) method is used, the time taken is more. 2.5 Active Contour based Approach This image is based on the enhancing and denoising on the basis of filter. The filters can be based on chevshev or histogram equalization or anisotropic diffusion. It is based on the semi automatic segmentation of the liver for which different techniques can be used, GVF snake method is one of those techniques. Hermite-spline curve method is then implied to connect the manually selected points and thus the edges of the segmented area are designed using the edge detector [3]. 2.6 Gray Level based Approach An adaptive hybrid segmentation algorithm using Bayesian classification on volume intensities, the process is initiated by selecting any random pixel in the liver image. Of the adjoining rectangular area around this pixel the values of variance & mean are determined. Then, a voxel classification with a smoothed MAP rule is applied to produce a segmentation label map [3]. 2.7 Generic Algorithm Genetic algorithms are optimization techniques inspired by natural evolution. In GA, solutions of an optimization problem are encoded as binary strings. After Generating a first set of random solutions, these can be improved by iteratively applying operators, termed selection, crossover and mutation, that mimic the corresponding processes of natural evolution. In fact, selection lets only the fittest individuals (best solutions, according to some goodness criteria or ’fitness function’) be present in the next generation (iteration of the algorithm); crossover lets them exchange tracts of their DNA (corresponding substrings) to generate offspring (new solutions), while mutation randomly introduces new genes (by flipping one or more bits of a solution). Genetic algorithm (GA) is a computing model which mainly simulates biological heredity, mutation of evolutionary process in the nature and manifests thoughts through selection, crossover and mutation operators. Its main characteristics are the searching strategy, exchanging of information between individuals in a group. It is particularly appropriate for complex and nonlinear problems which were difficult to be resolve dealing with traditional methods, demonstrates its unique charm in combinatorial optimization, adaptive control, artificial life and other application areas. It is one of the intelligent computing technologies. 3. PROBLEM DEFINITION AND OBJECTIVES It is important to detect and then analyse the root cell in the MRI images, so that the correct diagnosis and treatment can be decided. To implement this problem it is important to use segmentation of the liver images[7].This is the objective of the dissertation. Development of medical imaging technologies has made it a necessity to analyze patient datasets before taking any decision on treatment planning.  The manual segmentation of the liver parenchyma is extremely laborious [10].  Existing methods are cost intensive [5].  Most of existing methods are time consuming [3]. 3.1 Objectives Development of medical imaging technologies has made it a necessity to analyze patient datasets before taking any decision on treatment planning. In case of liver, its size, volume, and shape; structure of its vessels; and tumors sizes and locations are important. The main objective includes:  Acquire an image and perform pre-processing.  Find Region of Interest (ROI) and perform segmentation with algorithm to be proposed.  Compare performance of proposed algorithm with existing technique. 4. METHODOLOGY In this review paper a technique for the segmentation of liver is to be opted. The methodology opted is that, a liver image will be selected, after that noise will be added to the image and then the image will be denoised. The region of interest(ROI) will be selected out of the denoised by making the fuzzy coded binary map. The binary map values are selected and their inverse is mixed with denoised values. These values are then given to an empty matrix, this results as segmented liver images. Out of the selected region of the segmented MRI image, using GA the cancer can be detected. 4.1 Genetic Algorithm Based Clustering Genetic algorithm is based upon a simple principle of survival of the fittest. It uses clustering technique [11]. A cluster of pixels is taken. Genetic algorithm using a number of pixels is explained as: 1. First of all a chromosome is encoded using real, or binary numbers. 2. Then taking the values from the data set, clusters are defined and out of those the central cluster is initialized, which results as the population initialization. 3. Genetic algorithm represents the survival of the fittest. We define Davies Boulin index that is the ratio of sum of cluster separation within a cluster and between different clusters. 4. Then out of the existing population the fittest is selected to breed and generate the new generations.
  • 3. IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308 __________________________________________________________________________________________ Volume: 03 Issue: 05 | May-2014, Available @ http://www.ijret.org 269 5. After this the crossover is done using stochastic method, from which the parents and child clusters are generated. 6. After which the valid and best fitted genes in chromosomes are mutated with a probability µc 7. After a number of iterations, a suitable gene is preserved in a location outside the population with maximum fitness contains the centers of the final cluster. 5. CONCLUSIONS The best opted method out of all the methods discussed in literature review is genetic algorithm, the choice may vary from user to user. The methodology explains that, a liver image will be selected, after that noise will be added to the image and then the image will be denoised. The region of interest(ROI) will be selected out of the denoised by making the fuzzy coded binary map. The binary map values are selected and their inverse is mixed with denoised values. These values are then given to an empty matrix, this results as segmented liver images. Out of the selected region of the segmented MRI image, using GA the cancer can be detected. REFERENCES [1] Pedro Rodrigues, Joao L. Vilaca and Jaime Fonseca, “An Image Processing Application for Liver Tumour Segmentation”, IEEE, FEBRUARY 2011. [2] Evgin Goceri, Mehmet Z. Unlu, Cuneyt Guzelis and Oguz Dicle, “An Automatic Level Set Based Liver Segmentation from MRI Data Sets”, IEEE, 2012. [3] S. Priyadarshni and Dr. D. Selvathi, “Survey on Segmentation of Liver from CT Images”, IEEE, 2012. [4] Angelina. S, L. Padma Suresh and S. H. Krishna Veni, “Image Segmentation Based On Genetic Algorithm for Region Growth and Region Merging”, IEEE, 2012. [5] Ying Li, Yan-Ning Zhang, Ying-Lei Cheng, Rong- Chun Zhao and Gui-Sheng Liao, “An Effective Method For Image Segmentation”, IEEE, 2005. [6] S. Cagnoni, A. B. Dobrzeniecki, J. C. Yanch and R. Poli, “Interactive Segmentation of Multi-Dimensional Medical Data With Contour-Based Application of Genetic Algorithms”, IEEE, 1994. [7] Consuelo Cruz-Gomez, Petra Wiederhold and Marco Gudino-Zayas, “Automatic Liver Tissue Segmentation in Microscopic Images Using Fusion Color Space and Multiscale Morphological Reconstruction”, IEEE, 2013. [8] Jie Lu, Lin Shi, Min Deng, Simon C.H. YU and Pheng Ann Heng, “An Interactive Approoach To Liver Segmentation in CT Based on Deformable Model Integrated With Attractor Force”, IEEE, 2011. [9] Amir H. Foruzan, Yen-Wei Chen, Reza A. Zoroofi, Akira Furukawa, Yoshinobu Sato and Masatoshi Hori, “Multi-mode Narrow-band Thresholding with Application in Liver Segmentation from Low-contrast CT Images”, IEEE, 2009. [10] Jie Lu, Defeng Wang, Lin Shi and Pheng Ann Heng, “Automatic Liver Segmentation in CT Images based on Support Vector Machine”, IEEE, 2012. [11] Mridula J and Dipti Patra, “Genetic Algorithm based Segmentation of High Resolution Multispectral Images using GMRF Model”, IEEE, 2010. [12] Jiang Hua Wei and Yang Kai, “Research of Improved Genetic Algorithm for Thresholding Image Segmentation Based on Maximum Entropy”, IEEE, 2010. [13] S. S. Kumar and Dr. R. S. Moni, “Diagnosis of Liver Tumour from CT Images Using Fast Discrete Curvelet Transform”, IJCA, 2010. [14] N. Gopinath, “ Extraction of Cancer Cells From MRI Prostate Image Using MATLAB”, IJESIT, 2012. [15] M. A. Ansari and R. S. Anand, “Region Based Segmenattion and Image Analysis with Application to Medical Imaging”, ICTES, 2007.