Nonlinear multi-photon laser wave-mixing detection coupled with capillary electrophoresis provides an ultrasensitive method for analyzing malachite green, crystal violet, and their metabolites. This method offers zepto-mole detection sensitivity, excellent chemical selectivity and specificity, and high spatial resolution suitable for single-cell analysis. A 266 nm UV laser probes analytes in their native form while a visible laser probes labeled analytes. Coupling with capillary electrophoresis further enhances chemical selectivity. This portable, battery-powered method is suitable for a wide range of biomedical and environmental applications.