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Caveats and Comments
1
Overview:
This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is
available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh.
You are welcome to use the R code on GitHub for any purpose.
I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point
out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk.
I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist.
There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2.
Data sources:
• USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv
• USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv
• USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv
• Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv
• Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv
• Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv
• Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv
• Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ
• Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv
Models:
1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 =
𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50%
rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures).
Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction
interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/).
2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases.
Locations
The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g.,
China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add.
Stay safe, well, resilient, and kind.
Steve Shafer
steven.shafer@Stanford.edu
2,586,092
152,804
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Actual(points)/Predicted(line)
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-05-27
0
10,000
20,000
30,000
0
2,000
4,000
6,000
Cases/Day
Deaths/Day
Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5%
Explanation of the Figures
2
Brown dots:
cumulative tests
Red dots: cumulative cases
used to estimate Gompertz
function, presently set to last
3 weeks
Red line: predicted cumulative
cases based on the Gompertz
function estimated from the red
dots
Red number: total cases
on June 30th, based on
the Gompertz function
estimated from the red
dots
Black number: total
Deaths on July 31th,
based on log-linear
regression of the past
21 days
Black line: predicted
cumulative deaths, based
on a log linear regression
of deaths over past 21
days.
Axis for deaths / day, usually
1/10th of the axis for cases /
day on the left side of the
figure.
Green line: linear regression
over 8 days, used to calculate
percent increase / decrease
(see below)
Daily change in cases,
calculated as the slope of the
green line (above left) /
number of new cases
yesterday.
Case mortality:
cumulative deaths
/ cumulative cases.
Cases / day calculated
from cumulative cases
used to estimate the
Gompertz function
Cases / day calculated
from cumulative cases
not used to estimate the
Gompertz function
Deaths / day,
axis is on the left
Blue line: today
Blue dots: cumulative cases not
used to estimate Gompertz
function
Cumulative cases
(yesterday’s cases)
and cumulative deaths
(yesterday’s deaths)
Axis for cases / day.
Axis for deaths / day
appears to the right.
Geographic
location
Date of analysis,
also shown as
blue vertical line
below
Purple wedge: 98% ensemble
prediction interval from COVID-19
Forecast Hub (USA and US
States only)
Worldwide
42,899,301
1,210,140
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Worldwide projection as of 2020-10-03
10
1,000
100,000
CasesandDeaths/Day
Cases: 34,581,870 (295,362) -- Deaths: 1,027,809 (4,967) -- Case Mortality: 3.0% -- Daily Change: +0.4% Cases, +1.1% Deaths
2020-10-03 Summary: 3
USA
8,449,644
233,276
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-10-03
Mother'sDay
MemorialDay
July4th
July15,2020
LaborDay
10
1,000
100,000
CasesandDeaths/Day
Cases: 7,332,200 (54,441) -- Deaths: 208,695 (906) -- Case Mortality: 2.8% -- Daily Change: +0.6% Cases, +0.5% Deaths
2020-10-03 Summary: 4
Western Europe
3,820,285
168,519
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM)
Western Europe projection as of 2020-10-03
10
1,000
100,000
CasesandDeaths/Day
Cases: 2,735,951 (41,441) -- Deaths: 160,995 (371) -- Case Mortality: 5.9% -- Daily Change: +1.6% Cases, +3.4% Deaths
2020-10-03 Summary: 5
Comparison of COVID-19 Cases & Deaths
between US & Europe
Cases
Deaths
54,441
41,441
906
371
3
10
30
100
300
1,000
3,000
10,000
30,000
100,000
Date
DailyCasesandDeaths
Location
USA (318MM)
Western Europe (344MM)
Log plot of 7 day average
Comparison of COVID-19 Cases & Deaths between US & Europe
The numbers on the right are yesterday's figures, and will differ a bit from the plotted rolling mean
2020-10-03 Summary: 6
Non-authoritarian Asian ensemble
128,131
2,459
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Japan, South Korea, Thailand, and Vietnam (Population = 328 MM)
Non-authoritarian Asian ensemble projection as of 2020-10-03
1.0
10.0
100.0
1,000.0
CasesandDeaths/Day
Cases: 113,474 (608) -- Deaths: 2,105 (15) -- Case Mortality: 1.9% -- Daily Change: +1.5% Cases, +0.3% Deaths
2020-10-03 Summary: 7
Worldwide cases
USA
India
Brazil
Russia
Colombia
Peru
Spain
Argentina
Mexico
SouthAfrica
France
UnitedKingdom
Chile
Iran
Iraq
Bangladesh
SaudiArabia
Turkey
Italy
Philippines
Pakistan
Germany
Indonesia
Israel
Ukraine
Canada
Ecuador
Bolivia
Netherlands
Romania
Morocco
Belgium
DominicanRepublic
Kazakhstan
Egypt
Poland
Sweden
Guatemala
China
Japan
Nepal
Belarus
Honduras
CzechRepublic
Portugal
Ethiopia
Venezuela
Nigeria
Uzbekistan
Switzerland
Algeria
Kyrgyzstan
Ghana
Austria
Paraguay
Azerbaijan
Afghanistan
Kenya
Libya
Serbia
Denmark
ElSalvador
Hungary
Australia
SouthKorea
USA
0
2,000,000
4,000,000
6,000,000
8,000,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-10-03 Summary: 8
Worldwide cases
Israel
Chile
Peru
Brazil
USA
Spain
Argentina
Colombia
Bolivia
SouthAfrica
Iraq
DominicanRepublic
SaudiArabia
Belgium
Sweden
Honduras
France
Ecuador
Kyrgyzstan
Russia
Belarus
Netherlands
UnitedKingdom
CzechRepublic
Portugal
Switzerland
Kazakhstan
Guatemala
Iran
Mexico
Paraguay
Romania
Libya
Austria
India
Italy
Denmark
Canada
Azerbaijan
Ukraine
Serbia
Turkey
ElSalvador
Morocco
Germany
Philippines
Bulgaria
Hungary
Nepal
Venezuela
Poland
Bangladesh
Jordan
Slovakia
Uzbekistan
Ghana
Finland
Tunisia
Greece
Pakistan
Algeria
Afghanistan
Tajikistan
Australia
Zambia
USA
None
1 in 200
1 in 100
1 in 67
1 in 50
1 in 40
1 in 33
1 in 29
1 in 25
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-10-03 Summary: 9
Average new cases over past 7 days
Israel
Argentina
Spain
CzechRepublic
Netherlands
France
Belgium
Peru
Iraq
Jordan
Colombia
USA
Brazil
Chile
Paraguay
UnitedKingdom
Libya
Hungary
Slovakia
Denmark
Austria
Ukraine
Honduras
Romania
Tunisia
Ecuador
Portugal
India
Morocco
Russia
Nepal
Sweden
Iran
Canada
Guatemala
Switzerland
Bolivia
Mexico
Poland
DominicanRepublic
Belarus
Italy
Greece
Bulgaria
Venezuela
Kyrgyzstan
SouthAfrica
Germany
Philippines
Finland
Turkey
Myanmar
Indonesia
ElSalvador
Uzbekistan
SaudiArabia
Azerbaijan
Serbia
Mozambique
Bangladesh
Ethiopia
Angola
Malaysia
Tajikistan
Uganda
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagecases/day
Average new cases over past 7 days
Excludes countries with population < 5,000,000
2020-10-03 Summary: 10
Worldwide deaths
USA
Brazil
India
Mexico
UnitedKingdom
Italy
Peru
France
Spain
Iran
Colombia
Russia
Argentina
SouthAfrica
Chile
Ecuador
Indonesia
Belgium
Germany
Canada
Iraq
Turkey
Bolivia
Pakistan
Netherlands
Egypt
Sweden
Philippines
Bangladesh
Romania
SaudiArabia
China
Ukraine
Guatemala
Poland
Honduras
Morocco
DominicanRepublic
Switzerland
Portugal
Algeria
Kazakhstan
Israel
Japan
Afghanistan
Ethiopia
Nigeria
Kyrgyzstan
Australia
Paraguay
ElSalvador
Belarus
Bulgaria
Sudan
Austria
Hungary
Serbia
Kenya
CzechRepublic
Denmark
Venezuela
Azerbaijan
Yemen
Libya
Nepal
USA
0
50,000
100,000
150,000
200,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-10-03 Summary: 11
Worldwide deaths
Peru
Belgium
Bolivia
Spain
Ecuador
Chile
Brazil
Mexico
UnitedKingdom
USA
Sweden
Italy
Colombia
France
Argentina
Iran
Netherlands
SouthAfrica
Honduras
Iraq
Canada
Switzerland
Guatemala
Israel
Romania
DominicanRepublic
Kyrgyzstan
Portugal
SaudiArabia
Russia
Paraguay
ElSalvador
Bulgaria
Denmark
Germany
Kazakhstan
Turkey
Serbia
Austria
Ukraine
Libya
Belarus
India
Hungary
Azerbaijan
Egypt
CzechRepublic
Poland
Finland
Morocco
Philippines
Afghanistan
Algeria
Indonesia
Australia
Greece
Pakistan
Bangladesh
Sudan
Zambia
Tunisia
Nicaragua
Haiti
Yemen
Venezuela
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 in 833
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-10-03 Summary: 12
Average daily deaths over past 7 days
Argentina
Colombia
Israel
Bolivia
Mexico
Brazil
Chile
Spain
Iran
Peru
Paraguay
Ecuador
USA
Honduras
Iraq
Libya
Romania
CzechRepublic
SouthAfrica
Ukraine
France
Hungary
Morocco
Tunisia
Russia
SaudiArabia
Bulgaria
India
Guatemala
Netherlands
Turkey
Jordan
Belgium
UnitedKingdom
Poland
Canada
Philippines
Portugal
Belarus
DominicanRepublic
ElSalvador
Myanmar
Indonesia
Greece
Italy
Austria
Slovakia
Nepal
Venezuela
Angola
Sweden
Switzerland
Kazakhstan
Azerbaijan
Bangladesh
Egypt
Kenya
Algeria
Denmark
Australia
Germany
Syria
Uzbekistan
Serbia
Ethiopia
USA
None
1 in 200,000
1 in 100,000
1 in 66,667
1 in 50,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagedeaths/day
Average daily deaths over past 7 days
Excludes countries with population < 5,000,000
2020-10-03 Summary: 13
Mortality Trends
0
2
4
6
8
10
12
14
USCaseRateMortality
Mortality Type:
13 day rolling median
Cumulative
Daily Raw
Daily vs. Cumulative US Case Rate Mortality
Last week excluded because deaths are often backdated
2020-10-03 Summary: 14
Change in New Cases per Day
New cases are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
New cases by state as of 2020-10-03
2020-10-03 Summary: 15
Cases as a Percent of Peak Cases
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Cases as a Percent of Peak Cases
2020-10-03 Summary: 16
Change in New Deaths per Day
New deaths are:
Increasing > +0.5%
Increasing between +0.1% and +0.5%
No Change (-0.1% to +0.1%)
Decreasing between -0.1% and -0.5%
Decreasing > -0.5%
New deaths by state as of 2020-10-03
2020-10-03 Summary: 17
Deaths as a Percent of Peak Deaths
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Deaths as a Percent of Peak Deaths
2020-10-03 Summary: 18
Change in cases vs. change in deaths over
last 14 days
AL
AK
AZ
AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
IL
IN
KS
KY
LA
ME
MD
MA
MI
MSMO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
TN
TX
UT
VT
VA
WA
WV
WI
-6
-3
0
3
6
-6 -3 0 3 6
Change in cases (%/day)
Changeindeaths(%/day)
Change in cases vs. change in deaths over last 14 days as of 2020-10-03
Size is proportional total cases per capita
2020-10-03 Summary: 19
Total US COVID-19 Cases
California
Texas
Florida
NewYork
Georgia
Illinois
Arizona
NorthCarolina
NewJersey
Tennessee
Louisiana
Pennsylvania
Ohio
Alabama
Virginia
SouthCarolina
Michigan
Massachusetts
Missouri
Wisconsin
Maryland
Indiana
Minnesota
Mississippi
Iowa
Oklahoma
Washington
Arkansas
Nevada
Utah
Colorado
Kentucky
Kansas
Connecticut
Nebraska
Idaho
Oregon
NewMexico
RhodeIsland
SouthDakota
NorthDakota
Delaware
WestVirginia
DistrictofColumbia
Montana
Hawaii
NewHampshire
Alaska
Wyoming
Maine
Vermont
0
250,000
500,000
750,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Totalcases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.6, p governor: 0.86. NB: association != causation.
2020-10-03 Summary: 20
Total US COVID-19 Cases
Louisiana
Mississippi
Florida
Alabama
Georgia
Arizona
NorthDakota
Tennessee
Iowa
SouthCarolina
Arkansas
Texas
SouthDakota
Nevada
Nebraska
Idaho
NewYork
Illinois
RhodeIsland
Utah
NewJersey
Oklahoma
Wisconsin
DistrictofColumbia
Delaware
Missouri
California
Maryland
Kansas
NorthCarolina
Massachusetts
Indiana
Minnesota
Virginia
Connecticut
Kentucky
NewMexico
Michigan
Ohio
Pennsylvania
Montana
Colorado
Washington
Alaska
Wyoming
WestVirginia
Hawaii
Oregon
NewHampshire
Maine
Vermont
None
1 in 100
1 in 50
1 in 33
1 in 25
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalCases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.063, p governor: 0.01. NB: association != causation.
2020-10-03 Summary: 21
Average US COVID-19 cases over the past
7 days
NorthDakota
SouthDakota
Wisconsin
Utah
Montana
Iowa
Idaho
Arkansas
Nebraska
Oklahoma
Missouri
Kansas
Alabama
Wyoming
Tennessee
Minnesota
Kentucky
Mississippi
Illinois
Nevada
Alaska
SouthCarolina
Indiana
Texas
Delaware
NorthCarolina
Louisiana
WestVirginia
Florida
NewMexico
Georgia
Colorado
Ohio
Michigan
Maryland
RhodeIsland
Virginia
Massachusetts
California
Pennsylvania
NewJersey
Washington
Hawaii
Oregon
Arizona
Connecticut
NewYork
NewHampshire
DistrictofColumbia
Maine
Vermont
None
1 in 10,000
1 in 5,000
1 in 3,333
1 in 2,500
1 in 2,000
1 in 1,667
1 6 11 16 21 26 31 36 41 46 51
Rank
NewCases/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 cases over the past 7 days
p masks as of July 20, 2020: 0.0024, p governor: 0.0093. NB: association != causation.
2020-10-03 Summary: 22
Total US COVID-19 Deaths
NewYork
Texas
NewJersey
California
Florida
Massachusetts
Illinois
Pennsylvania
Michigan
Georgia
Arizona
Louisiana
Ohio
Connecticut
Maryland
Indiana
NorthCarolina
SouthCarolina
Virginia
Mississippi
Alabama
Tennessee
Missouri
Washington
Minnesota
Colorado
Nevada
Arkansas
Iowa
Wisconsin
Kentucky
RhodeIsland
Oklahoma
NewMexico
Kansas
Delaware
DistrictofColumbia
Oregon
Nebraska
Idaho
Utah
NewHampshire
WestVirginia
NorthDakota
SouthDakota
Montana
Hawaii
Maine
Vermont
Alaska
Wyoming
0
10,000
20,000
30,000
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.075, p governor: 0.33. NB: association != causation.
2020-10-03 Summary: 23
Total US COVID-19 Deaths
NewJersey
NewYork
Massachusetts
Connecticut
Louisiana
RhodeIsland
Mississippi
DistrictofColumbia
Arizona
Michigan
Illinois
Florida
Georgia
SouthCarolina
Delaware
Maryland
Pennsylvania
Texas
Indiana
Nevada
Alabama
Arkansas
Iowa
NewMexico
Ohio
California
Virginia
Minnesota
Tennessee
Colorado
Missouri
NorthDakota
NorthCarolina
NewHampshire
Washington
Kentucky
SouthDakota
Idaho
Oklahoma
Nebraska
Kansas
Wisconsin
WestVirginia
Montana
Utah
Oregon
Maine
Hawaii
Vermont
Wyoming
Alaska
None
1 in 2,000
1 in 1,000
1 in 667
1 in 500
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.04, p governor: 0.41. NB: association != causation.
2020-10-03 Summary: 24
Average US COVID-19 deaths over the past
7 days
NorthDakota
Arkansas
Mississippi
Florida
Missouri
SouthDakota
Tennessee
Georgia
Louisiana
SouthCarolina
Texas
NorthCarolina
Iowa
Kansas
Montana
Massachusetts
WestVirginia
Arizona
Illinois
California
Ohio
Indiana
Nebraska
Virginia
Oklahoma
Wisconsin
Alaska
Nevada
Kentucky
NewMexico
Minnesota
Hawaii
Delaware
RhodeIsland
Idaho
Utah
Michigan
Alabama
DistrictofColumbia
Pennsylvania
Washington
Maryland
Oregon
NewJersey
NewYork
Wyoming
Colorado
Connecticut
NewHampshire
Maine
Vermont
None
1 in 500,000
1 in 250,000
1 in 166,667
1 in 125,000
1 in 100,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Deaths/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 deaths over the past 7 days
p masks as of July 20, 2020: 0.02, p governor: 0.01. NB: association != causation.
2020-10-03 Summary: 25
Daily testing trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Dailytestingfrommintomax
Daily testing trends from min to max
Line = Friedman's supersmoother
2020-10-03 Summary: 26
Change in daily tests over past 14 days
Alaska
Oregon
Colorado
Minnesota
SouthCarolina
Utah
NorthCarolina
Idaho
Oklahoma
Maine
Wisconsin
NewMexico
Kentucky
WestVirginia
Connecticut
Wyoming
Louisiana
Illinois
Ohio
Michigan
Arkansas
Texas
Montana
Virginia
Missouri
California
NorthDakota
NewYork
NewHampshire
Kansas
Washington
Nebraska
Tennessee
SouthDakota
NewJersey
Mississippi
RhodeIsland
Iowa
Nevada
Massachusetts
DistrictofColumbia
Delaware
Indiana
Pennsylvania
Georgia
Alabama
Florida
Vermont
Maryland
Arizona
Hawaii
-5.0
-2.5
0.0
2.5
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeindailytests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in daily tests over past 14 days
p masks as of July 20, 2020: 0.71, p governor: 0.17. NB: association != causation.
2020-10-03 Summary: 27
Percent Tested
Alaska
NewYork
DistrictofColumbia
Louisiana
Connecticut
Illinois
NewMexico
Tennessee
NewJersey
California
Michigan
Arkansas
Maine
Montana
Massachusetts
RhodeIsland
WestVirginia
NorthDakota
Kentucky
Oklahoma
Delaware
NorthCarolina
Ohio
Georgia
Wisconsin
Maryland
Vermont
Utah
SouthCarolina
Minnesota
Florida
Mississippi
Washington
Virginia
Iowa
Nebraska
Alabama
Nevada
SouthDakota
Texas
Missouri
Hawaii
Indiana
NewHampshire
Arizona
Kansas
Wyoming
Idaho
Oregon
Pennsylvania
Colorado
0
20
40
60
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentTested
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent Tested
p masks as of July 20, 2020: 0.025, p governor: 0.081. NB: association != causation.
2020-10-03 Summary: 28
Percent of Positive COVID Tests
Arizona
Idaho
Mississippi
Alabama
Florida
SouthDakota
Texas
Kansas
Nevada
Iowa
SouthCarolina
Georgia
Nebraska
Missouri
NorthDakota
Utah
Indiana
Wisconsin
Arkansas
Pennsylvania
Maryland
Colorado
Oklahoma
RhodeIsland
Delaware
Louisiana
Virginia
Minnesota
NorthCarolina
Tennessee
Wyoming
Massachusetts
NewJersey
California
Illinois
Kentucky
Oregon
Ohio
Washington
Hawaii
NewYork
Montana
DistrictofColumbia
Michigan
Connecticut
NewMexico
NewHampshire
WestVirginia
Alaska
Maine
Vermont
0.0
5.0
10.0
15.0
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentofPositiveTests
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent of Positive COVID Tests
p masks as of July 20, 2020: 0.0034, p governor: 0.0018. NB: association != causation.
2020-10-03 Summary: 29
Positive fraction trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Fractionpositivefrommintomax
Positive fraction trends from min to max
2020-10-03 Summary: 30
Change in positive tests over past 14 days
NorthDakota
Montana
Wyoming
Wisconsin
SouthDakota
Alaska
Utah
Idaho
Missouri
Iowa
Kansas
WestVirginia
Hawaii
Nebraska
Indiana
Oklahoma
Minnesota
Mississippi
Oregon
Nevada
NorthCarolina
Delaware
NewMexico
Alabama
Florida
Pennsylvania
Colorado
Tennessee
Maryland
Washington
Michigan
Vermont
Georgia
RhodeIsland
Illinois
Louisiana
Massachusetts
Virginia
Arizona
Texas
California
NewJersey
Arkansas
Ohio
NewYork
DistrictofColumbia
SouthCarolina
Connecticut
NewHampshire
Maine
Kentucky
-1.0
0.0
1.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinpositivetests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in positive tests over past 14 days
p masks as of July 20, 2020: 0.0044, p governor: 0.06. NB: association != causation.
2020-10-03 Summary: 31
Change in tests vs. change in positive tests
over last 14 days
AL
AK
AZ
AR
CA
CO
CT
DE
DC
GA
HI
ID
IL
IN
IA KS
KY
ME
MD
MA
MI
MN
MS
MT
NH
NJ
NM
NY
NC
ND
OH
OK OR
PA
RI
SC
SD
TN
UT
VT
WV
WI
-1
0
1
-5.0 -2.5 0.0 2.5 5.0
Change in tests (%/day)
Changeinpositivetests(%/day)
Change in tests vs. change in positive tests over last 14 days as of 2020-10-03
Size is proportional daily deaths per capita over the past 7 days
2020-10-03 Summary: 32
Current hospitalizations as a percent of peak
since FebruaryIowa
Missouri
Montana
Nebraska
NorthDakota
Oklahoma
SouthDakota
WestVirginia
Wisconsin
Wyoming
Arkansas
Alaska
Kansas
Utah
Kentucky
NorthCarolina
Indiana
Oregon
Tennessee
Minnesota
Ohio
Idaho
Virginia
Georgia
Alabama
Hawaii
Washington
Mississippi
SouthCarolina
Nevada
NewMexico
California
Illinois
RhodeIsland
Texas
Colorado
Louisiana
Delaware
DistrictofColumbia
Florida
Maine
Maryland
Pennsylvania
Michigan
Arizona
NewHampshire
Massachusetts
NewJersey
Vermont
Connecticut
NewYork
0
30
60
90
1 6 11 16 21 26 31 36 41 46 51
Rank
Hospitalizations(%ofpeak)
Masks
No
Yes
Governor
aa
Democratic
Republican
Current hospitalizations as a percent of peak since February
p masks as of July 20, 2020: 0.0041, p governor: 0.055. NB: association != causation.
2020-10-03 Summary: 33
Hospitalizations trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Hospitalizationsfrommintomax
Hospitalizations trends from min to max
2020-10-03 Summary: 34
Change in hospitalizations over past 14
days
NewHampshire
Wisconsin
Wyoming
Montana
SouthDakota
Connecticut
Iowa
NorthDakota
Minnesota
Utah
NewYork
Nebraska
Massachusetts
Indiana
RhodeIsland
NewMexico
Delaware
Arkansas
Pennsylvania
Oklahoma
Oregon
Missouri
NewJersey
Colorado
Ohio
Michigan
Kansas
Tennessee
Illinois
DistrictofColumbia
Kentucky
WestVirginia
Arizona
NorthCarolina
Washington
Alaska
Maine
Maryland
Texas
Alabama
Idaho
Nevada
SouthCarolina
Virginia
Georgia
Mississippi
California
Florida
Louisiana
Vermont
Hawaii
-2.0
0.0
2.0
4.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinhospitalizations(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in hospitalizations over past 14 days
p masks as of July 20, 2020: 0.39, p governor: 0.98. NB: association != causation.
2020-10-03 Summary: 35
Change in New Cases per Day
Direction
Increasing > +2%
Increasing between +0.5% and +2%
No Change (-0.5% to +0.5%)
Decreasing between -0.5% and -2%
Decreasing > -2%
NA
Trends by county as of 2020-10-03
NA = Inadequate data
2020-10-03 Summary: 36

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COVID-19 Update (Summary): October 3, 2020

  • 1. Caveats and Comments 1 Overview: This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh. You are welcome to use the R code on GitHub for any purpose. I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk. I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist. There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2. Data sources: • USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv • USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv • USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv • Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv • Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv • Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv • Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv • Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ • Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv Models: 1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 = 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50% rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures). Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/). 2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases. Locations The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g., China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add. Stay safe, well, resilient, and kind. Steve Shafer steven.shafer@Stanford.edu
  • 2. 2,586,092 152,804 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Actual(points)/Predicted(line) Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-05-27 0 10,000 20,000 30,000 0 2,000 4,000 6,000 Cases/Day Deaths/Day Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5% Explanation of the Figures 2 Brown dots: cumulative tests Red dots: cumulative cases used to estimate Gompertz function, presently set to last 3 weeks Red line: predicted cumulative cases based on the Gompertz function estimated from the red dots Red number: total cases on June 30th, based on the Gompertz function estimated from the red dots Black number: total Deaths on July 31th, based on log-linear regression of the past 21 days Black line: predicted cumulative deaths, based on a log linear regression of deaths over past 21 days. Axis for deaths / day, usually 1/10th of the axis for cases / day on the left side of the figure. Green line: linear regression over 8 days, used to calculate percent increase / decrease (see below) Daily change in cases, calculated as the slope of the green line (above left) / number of new cases yesterday. Case mortality: cumulative deaths / cumulative cases. Cases / day calculated from cumulative cases used to estimate the Gompertz function Cases / day calculated from cumulative cases not used to estimate the Gompertz function Deaths / day, axis is on the left Blue line: today Blue dots: cumulative cases not used to estimate Gompertz function Cumulative cases (yesterday’s cases) and cumulative deaths (yesterday’s deaths) Axis for cases / day. Axis for deaths / day appears to the right. Geographic location Date of analysis, also shown as blue vertical line below Purple wedge: 98% ensemble prediction interval from COVID-19 Forecast Hub (USA and US States only)
  • 3. Worldwide 42,899,301 1,210,140 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Worldwide projection as of 2020-10-03 10 1,000 100,000 CasesandDeaths/Day Cases: 34,581,870 (295,362) -- Deaths: 1,027,809 (4,967) -- Case Mortality: 3.0% -- Daily Change: +0.4% Cases, +1.1% Deaths 2020-10-03 Summary: 3
  • 4. USA 8,449,644 233,276 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-10-03 Mother'sDay MemorialDay July4th July15,2020 LaborDay 10 1,000 100,000 CasesandDeaths/Day Cases: 7,332,200 (54,441) -- Deaths: 208,695 (906) -- Case Mortality: 2.8% -- Daily Change: +0.6% Cases, +0.5% Deaths 2020-10-03 Summary: 4
  • 5. Western Europe 3,820,285 168,519 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM) Western Europe projection as of 2020-10-03 10 1,000 100,000 CasesandDeaths/Day Cases: 2,735,951 (41,441) -- Deaths: 160,995 (371) -- Case Mortality: 5.9% -- Daily Change: +1.6% Cases, +3.4% Deaths 2020-10-03 Summary: 5
  • 6. Comparison of COVID-19 Cases & Deaths between US & Europe Cases Deaths 54,441 41,441 906 371 3 10 30 100 300 1,000 3,000 10,000 30,000 100,000 Date DailyCasesandDeaths Location USA (318MM) Western Europe (344MM) Log plot of 7 day average Comparison of COVID-19 Cases & Deaths between US & Europe The numbers on the right are yesterday's figures, and will differ a bit from the plotted rolling mean 2020-10-03 Summary: 6
  • 7. Non-authoritarian Asian ensemble 128,131 2,459 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Japan, South Korea, Thailand, and Vietnam (Population = 328 MM) Non-authoritarian Asian ensemble projection as of 2020-10-03 1.0 10.0 100.0 1,000.0 CasesandDeaths/Day Cases: 113,474 (608) -- Deaths: 2,105 (15) -- Case Mortality: 1.9% -- Daily Change: +1.5% Cases, +0.3% Deaths 2020-10-03 Summary: 7
  • 9. Worldwide cases Israel Chile Peru Brazil USA Spain Argentina Colombia Bolivia SouthAfrica Iraq DominicanRepublic SaudiArabia Belgium Sweden Honduras France Ecuador Kyrgyzstan Russia Belarus Netherlands UnitedKingdom CzechRepublic Portugal Switzerland Kazakhstan Guatemala Iran Mexico Paraguay Romania Libya Austria India Italy Denmark Canada Azerbaijan Ukraine Serbia Turkey ElSalvador Morocco Germany Philippines Bulgaria Hungary Nepal Venezuela Poland Bangladesh Jordan Slovakia Uzbekistan Ghana Finland Tunisia Greece Pakistan Algeria Afghanistan Tajikistan Australia Zambia USA None 1 in 200 1 in 100 1 in 67 1 in 50 1 in 40 1 in 33 1 in 29 1 in 25 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Totalcasestodate Worldwide cases Excludes countries with population < 5,000,000 2020-10-03 Summary: 9
  • 10. Average new cases over past 7 days Israel Argentina Spain CzechRepublic Netherlands France Belgium Peru Iraq Jordan Colombia USA Brazil Chile Paraguay UnitedKingdom Libya Hungary Slovakia Denmark Austria Ukraine Honduras Romania Tunisia Ecuador Portugal India Morocco Russia Nepal Sweden Iran Canada Guatemala Switzerland Bolivia Mexico Poland DominicanRepublic Belarus Italy Greece Bulgaria Venezuela Kyrgyzstan SouthAfrica Germany Philippines Finland Turkey Myanmar Indonesia ElSalvador Uzbekistan SaudiArabia Azerbaijan Serbia Mozambique Bangladesh Ethiopia Angola Malaysia Tajikistan Uganda USA None 1 in 5,000 1 in 2,500 1 in 1,667 1 in 1,250 1 in 1,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagecases/day Average new cases over past 7 days Excludes countries with population < 5,000,000 2020-10-03 Summary: 10
  • 13. Average daily deaths over past 7 days Argentina Colombia Israel Bolivia Mexico Brazil Chile Spain Iran Peru Paraguay Ecuador USA Honduras Iraq Libya Romania CzechRepublic SouthAfrica Ukraine France Hungary Morocco Tunisia Russia SaudiArabia Bulgaria India Guatemala Netherlands Turkey Jordan Belgium UnitedKingdom Poland Canada Philippines Portugal Belarus DominicanRepublic ElSalvador Myanmar Indonesia Greece Italy Austria Slovakia Nepal Venezuela Angola Sweden Switzerland Kazakhstan Azerbaijan Bangladesh Egypt Kenya Algeria Denmark Australia Germany Syria Uzbekistan Serbia Ethiopia USA None 1 in 200,000 1 in 100,000 1 in 66,667 1 in 50,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagedeaths/day Average daily deaths over past 7 days Excludes countries with population < 5,000,000 2020-10-03 Summary: 13
  • 14. Mortality Trends 0 2 4 6 8 10 12 14 USCaseRateMortality Mortality Type: 13 day rolling median Cumulative Daily Raw Daily vs. Cumulative US Case Rate Mortality Last week excluded because deaths are often backdated 2020-10-03 Summary: 14
  • 15. Change in New Cases per Day New cases are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% New cases by state as of 2020-10-03 2020-10-03 Summary: 15
  • 16. Cases as a Percent of Peak Cases HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Cases as a Percent of Peak Cases 2020-10-03 Summary: 16
  • 17. Change in New Deaths per Day New deaths are: Increasing > +0.5% Increasing between +0.1% and +0.5% No Change (-0.1% to +0.1%) Decreasing between -0.1% and -0.5% Decreasing > -0.5% New deaths by state as of 2020-10-03 2020-10-03 Summary: 17
  • 18. Deaths as a Percent of Peak Deaths HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Deaths as a Percent of Peak Deaths 2020-10-03 Summary: 18
  • 19. Change in cases vs. change in deaths over last 14 days AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN KS KY LA ME MD MA MI MSMO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC TN TX UT VT VA WA WV WI -6 -3 0 3 6 -6 -3 0 3 6 Change in cases (%/day) Changeindeaths(%/day) Change in cases vs. change in deaths over last 14 days as of 2020-10-03 Size is proportional total cases per capita 2020-10-03 Summary: 19
  • 20. Total US COVID-19 Cases California Texas Florida NewYork Georgia Illinois Arizona NorthCarolina NewJersey Tennessee Louisiana Pennsylvania Ohio Alabama Virginia SouthCarolina Michigan Massachusetts Missouri Wisconsin Maryland Indiana Minnesota Mississippi Iowa Oklahoma Washington Arkansas Nevada Utah Colorado Kentucky Kansas Connecticut Nebraska Idaho Oregon NewMexico RhodeIsland SouthDakota NorthDakota Delaware WestVirginia DistrictofColumbia Montana Hawaii NewHampshire Alaska Wyoming Maine Vermont 0 250,000 500,000 750,000 1 6 11 16 21 26 31 36 41 46 51 Rank Totalcases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.6, p governor: 0.86. NB: association != causation. 2020-10-03 Summary: 20
  • 21. Total US COVID-19 Cases Louisiana Mississippi Florida Alabama Georgia Arizona NorthDakota Tennessee Iowa SouthCarolina Arkansas Texas SouthDakota Nevada Nebraska Idaho NewYork Illinois RhodeIsland Utah NewJersey Oklahoma Wisconsin DistrictofColumbia Delaware Missouri California Maryland Kansas NorthCarolina Massachusetts Indiana Minnesota Virginia Connecticut Kentucky NewMexico Michigan Ohio Pennsylvania Montana Colorado Washington Alaska Wyoming WestVirginia Hawaii Oregon NewHampshire Maine Vermont None 1 in 100 1 in 50 1 in 33 1 in 25 1 6 11 16 21 26 31 36 41 46 51 Rank TotalCases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.063, p governor: 0.01. NB: association != causation. 2020-10-03 Summary: 21
  • 22. Average US COVID-19 cases over the past 7 days NorthDakota SouthDakota Wisconsin Utah Montana Iowa Idaho Arkansas Nebraska Oklahoma Missouri Kansas Alabama Wyoming Tennessee Minnesota Kentucky Mississippi Illinois Nevada Alaska SouthCarolina Indiana Texas Delaware NorthCarolina Louisiana WestVirginia Florida NewMexico Georgia Colorado Ohio Michigan Maryland RhodeIsland Virginia Massachusetts California Pennsylvania NewJersey Washington Hawaii Oregon Arizona Connecticut NewYork NewHampshire DistrictofColumbia Maine Vermont None 1 in 10,000 1 in 5,000 1 in 3,333 1 in 2,500 1 in 2,000 1 in 1,667 1 6 11 16 21 26 31 36 41 46 51 Rank NewCases/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 cases over the past 7 days p masks as of July 20, 2020: 0.0024, p governor: 0.0093. NB: association != causation. 2020-10-03 Summary: 22
  • 23. Total US COVID-19 Deaths NewYork Texas NewJersey California Florida Massachusetts Illinois Pennsylvania Michigan Georgia Arizona Louisiana Ohio Connecticut Maryland Indiana NorthCarolina SouthCarolina Virginia Mississippi Alabama Tennessee Missouri Washington Minnesota Colorado Nevada Arkansas Iowa Wisconsin Kentucky RhodeIsland Oklahoma NewMexico Kansas Delaware DistrictofColumbia Oregon Nebraska Idaho Utah NewHampshire WestVirginia NorthDakota SouthDakota Montana Hawaii Maine Vermont Alaska Wyoming 0 10,000 20,000 30,000 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.075, p governor: 0.33. NB: association != causation. 2020-10-03 Summary: 23
  • 24. Total US COVID-19 Deaths NewJersey NewYork Massachusetts Connecticut Louisiana RhodeIsland Mississippi DistrictofColumbia Arizona Michigan Illinois Florida Georgia SouthCarolina Delaware Maryland Pennsylvania Texas Indiana Nevada Alabama Arkansas Iowa NewMexico Ohio California Virginia Minnesota Tennessee Colorado Missouri NorthDakota NorthCarolina NewHampshire Washington Kentucky SouthDakota Idaho Oklahoma Nebraska Kansas Wisconsin WestVirginia Montana Utah Oregon Maine Hawaii Vermont Wyoming Alaska None 1 in 2,000 1 in 1,000 1 in 667 1 in 500 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.04, p governor: 0.41. NB: association != causation. 2020-10-03 Summary: 24
  • 25. Average US COVID-19 deaths over the past 7 days NorthDakota Arkansas Mississippi Florida Missouri SouthDakota Tennessee Georgia Louisiana SouthCarolina Texas NorthCarolina Iowa Kansas Montana Massachusetts WestVirginia Arizona Illinois California Ohio Indiana Nebraska Virginia Oklahoma Wisconsin Alaska Nevada Kentucky NewMexico Minnesota Hawaii Delaware RhodeIsland Idaho Utah Michigan Alabama DistrictofColumbia Pennsylvania Washington Maryland Oregon NewJersey NewYork Wyoming Colorado Connecticut NewHampshire Maine Vermont None 1 in 500,000 1 in 250,000 1 in 166,667 1 in 125,000 1 in 100,000 1 6 11 16 21 26 31 36 41 46 51 Rank Deaths/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 deaths over the past 7 days p masks as of July 20, 2020: 0.02, p governor: 0.01. NB: association != causation. 2020-10-03 Summary: 25
  • 26. Daily testing trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Dailytestingfrommintomax Daily testing trends from min to max Line = Friedman's supersmoother 2020-10-03 Summary: 26
  • 27. Change in daily tests over past 14 days Alaska Oregon Colorado Minnesota SouthCarolina Utah NorthCarolina Idaho Oklahoma Maine Wisconsin NewMexico Kentucky WestVirginia Connecticut Wyoming Louisiana Illinois Ohio Michigan Arkansas Texas Montana Virginia Missouri California NorthDakota NewYork NewHampshire Kansas Washington Nebraska Tennessee SouthDakota NewJersey Mississippi RhodeIsland Iowa Nevada Massachusetts DistrictofColumbia Delaware Indiana Pennsylvania Georgia Alabama Florida Vermont Maryland Arizona Hawaii -5.0 -2.5 0.0 2.5 1 6 11 16 21 26 31 36 41 46 51 Rank Changeindailytests(%/day) Masks No Yes Governor aa Democratic Republican Change in daily tests over past 14 days p masks as of July 20, 2020: 0.71, p governor: 0.17. NB: association != causation. 2020-10-03 Summary: 27
  • 29. Percent of Positive COVID Tests Arizona Idaho Mississippi Alabama Florida SouthDakota Texas Kansas Nevada Iowa SouthCarolina Georgia Nebraska Missouri NorthDakota Utah Indiana Wisconsin Arkansas Pennsylvania Maryland Colorado Oklahoma RhodeIsland Delaware Louisiana Virginia Minnesota NorthCarolina Tennessee Wyoming Massachusetts NewJersey California Illinois Kentucky Oregon Ohio Washington Hawaii NewYork Montana DistrictofColumbia Michigan Connecticut NewMexico NewHampshire WestVirginia Alaska Maine Vermont 0.0 5.0 10.0 15.0 1 6 11 16 21 26 31 36 41 46 51 Rank PercentofPositiveTests Masks No Yes Governor aa Democratic Republican Percent of Positive COVID Tests p masks as of July 20, 2020: 0.0034, p governor: 0.0018. NB: association != causation. 2020-10-03 Summary: 29
  • 30. Positive fraction trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Fractionpositivefrommintomax Positive fraction trends from min to max 2020-10-03 Summary: 30
  • 31. Change in positive tests over past 14 days NorthDakota Montana Wyoming Wisconsin SouthDakota Alaska Utah Idaho Missouri Iowa Kansas WestVirginia Hawaii Nebraska Indiana Oklahoma Minnesota Mississippi Oregon Nevada NorthCarolina Delaware NewMexico Alabama Florida Pennsylvania Colorado Tennessee Maryland Washington Michigan Vermont Georgia RhodeIsland Illinois Louisiana Massachusetts Virginia Arizona Texas California NewJersey Arkansas Ohio NewYork DistrictofColumbia SouthCarolina Connecticut NewHampshire Maine Kentucky -1.0 0.0 1.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinpositivetests(%/day) Masks No Yes Governor aa Democratic Republican Change in positive tests over past 14 days p masks as of July 20, 2020: 0.0044, p governor: 0.06. NB: association != causation. 2020-10-03 Summary: 31
  • 32. Change in tests vs. change in positive tests over last 14 days AL AK AZ AR CA CO CT DE DC GA HI ID IL IN IA KS KY ME MD MA MI MN MS MT NH NJ NM NY NC ND OH OK OR PA RI SC SD TN UT VT WV WI -1 0 1 -5.0 -2.5 0.0 2.5 5.0 Change in tests (%/day) Changeinpositivetests(%/day) Change in tests vs. change in positive tests over last 14 days as of 2020-10-03 Size is proportional daily deaths per capita over the past 7 days 2020-10-03 Summary: 32
  • 33. Current hospitalizations as a percent of peak since FebruaryIowa Missouri Montana Nebraska NorthDakota Oklahoma SouthDakota WestVirginia Wisconsin Wyoming Arkansas Alaska Kansas Utah Kentucky NorthCarolina Indiana Oregon Tennessee Minnesota Ohio Idaho Virginia Georgia Alabama Hawaii Washington Mississippi SouthCarolina Nevada NewMexico California Illinois RhodeIsland Texas Colorado Louisiana Delaware DistrictofColumbia Florida Maine Maryland Pennsylvania Michigan Arizona NewHampshire Massachusetts NewJersey Vermont Connecticut NewYork 0 30 60 90 1 6 11 16 21 26 31 36 41 46 51 Rank Hospitalizations(%ofpeak) Masks No Yes Governor aa Democratic Republican Current hospitalizations as a percent of peak since February p masks as of July 20, 2020: 0.0041, p governor: 0.055. NB: association != causation. 2020-10-03 Summary: 33
  • 34. Hospitalizations trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Hospitalizationsfrommintomax Hospitalizations trends from min to max 2020-10-03 Summary: 34
  • 35. Change in hospitalizations over past 14 days NewHampshire Wisconsin Wyoming Montana SouthDakota Connecticut Iowa NorthDakota Minnesota Utah NewYork Nebraska Massachusetts Indiana RhodeIsland NewMexico Delaware Arkansas Pennsylvania Oklahoma Oregon Missouri NewJersey Colorado Ohio Michigan Kansas Tennessee Illinois DistrictofColumbia Kentucky WestVirginia Arizona NorthCarolina Washington Alaska Maine Maryland Texas Alabama Idaho Nevada SouthCarolina Virginia Georgia Mississippi California Florida Louisiana Vermont Hawaii -2.0 0.0 2.0 4.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinhospitalizations(%/day) Masks No Yes Governor aa Democratic Republican Change in hospitalizations over past 14 days p masks as of July 20, 2020: 0.39, p governor: 0.98. NB: association != causation. 2020-10-03 Summary: 35
  • 36. Change in New Cases per Day Direction Increasing > +2% Increasing between +0.5% and +2% No Change (-0.5% to +0.5%) Decreasing between -0.5% and -2% Decreasing > -2% NA Trends by county as of 2020-10-03 NA = Inadequate data 2020-10-03 Summary: 36