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TOWARDS SMARTER AGRICULTURAL 
SYSTEMS: PAST, PRESENT AND 
ENVISAGED FUTURE SOILS 
RESEARCH 
Ngonidzashe Chirinda 
Soils Research Area (Scientist- Soils and Climate Change) 
1
Presentation Agenda 
• Past: Laboratory methodologies, soil properties, 
crop production, GHG emissions, Life cycle 
assessments and modelling 
• Present: Laboratory and field processes and 
capacity building 
• Future: Advanced analytical infrastructure, low 
emission farms, regional networks and 
partnerships 
2
The Past 
• Post-cold-storage conditioning time affects soil 
denitrifying enzyme activity 
• Soil properties and crop production 
• Soil GHG emissions 
• Modelling 
• Life cycle assessment: C-footprint of cropping systems 
3
Post-cold storage conditioning time 
affects soil denitrifying enzyme activity 
DEA assay basis: soil enzyme 
concentration directly 
proportional to denitrification 
rates when no other factors 
are limiting 
- 
nitrate reductase 
2NO3 
- 
nitrite reductase 
2NO2 
2NO 
nitric oxide reductase 
N2O 
nitrous oxide reductase 
N2 
4
Hypothesis: Conditioning time (post-cold storage warming-up 
time prior to soil analysis) significantly influences results 
obtained through the denitrifier enzyme activity (DEA) assay. 
5
Findings 
• Fluctuation of DEA post-cold- 
storage 
• Standardization of 
procedures – overnight 
warming 
Chirinda et al. 2011: Commun. Soil Sci. Plant Analy. 6
Organic fertilizer Inorganic fertilizer 
CO2 
Microbial 
biomass 
+ 
NH4 
- 
NO3 
- 
Soil organic matter 
N2 
N2O 
NO2 
Mineralization 
- 
NO2 
Nitrification 
Denitrification 
NO 
Immobilization 
•C availability 
•Anaerobicity 
•Residence time 
•NO3 
- availability 
7
Conventional C4/+IF/-CC 
spring barley faba bean potato winter wheat 
Organic O4/+M/-CC 
spring barley faba bean potato winter wheat 
Organic O4/-M/+CC 
spring barleyCC faba beanCC potato winter wheatCC 
Organic O4/+M/+CC 
spring barleyCC faba beanCC potato winter wheatCC 
Organic O2/+M/+CC 
spring barleyCC ley potato winter wheatCC 
Catch crops: Ryegrass, chicory, red and white clover 
Ley: Ryegrass, red and white clover 
8
Hypothesis 
Increased C inputs via crop residues, 
catch crops and manure would have 
positive and additive effects on soil C 
storage and microbial activity leading to 
improved N availability and crop 
productivity. 
9
Pearson correlation coefficients (r) between different variables in soils 
under winter wheat 
C input SOC Resp. MBN PMN PAO DEA N2O Dp/Do 
C input 
SOC 
Resp. 0.95*** 
MBN 0.65* 0.70* 
PMN 0.71* 0.75* 0.90** 
PAO 0.85** 0.74* 0.61† 
DEA 0.74* 0.64* 
N2O −0.59† −0.60† −0.60† 
Dp/Do 
BD −0.73* 0.73* −0.55† 
†,*, **,*** P<0.10, P<0.05, P<0.01, P<0.001, respectively. 
10 
Chirinda et al. 2010a: Agric. Ecosystem Environ.
Grain (t ha-1) and Nitrogen (kg N ha-1) yields at harvest 
System Grain N Grain N 
___winter wheat___ _____spring barley___ 
Fertilizer type effect 
C4/+IF/−CC 9.5a 164a 5.5a 104a 
O4/+M/−CC 5.0b 71b 3.3b 53b 
O4/−M/+CC 2.8c 39c 4.5c 74c 
O4/+M/+CC 6.3b 98b 5.2a 91a 
O2/+M/+CC 5.8b 87b 5.7a 99a 
Manure effect 
Chirinda et al. 2010a: Agric. Ecosyst. Environ. 11
Conclusions 
• The hypothesis that increased C (and N) inputs 
increase microbial activity, N availability and crop 
productivity is accepted 
• There was no evidence for additive effects on soil 
C storage 
12
Greenhouse gas emissions 
Agriculture roles to climate change 
Victim: productivity influenced by temp. rise 
Source: contributes to release of three greenhouse 
gases CO2, CH4 and N2O 
Solution: significant amounts of CO2 can be 
absorbed through photosynthesis 
13
Hypothesis 
Restricted availability of N in organically 
managed systems leads to lower N2O emissions 
compared to the inorganic fertilizer-based 
systems receiving higher N inputs. 
14
Winter wheat yields, cumulative and relative soil N2O emissions 
Cum. N2O 
emission 
Grain yield Emissions per yield Emissions per N 
applied 
Site/system mg N m-2 kg DM m-2 mg N2O-N kg-1 DM kg N2O-N 100 kg-1 N 
Flakkebjerg 
C4/+IF/-CC 137a 0.76a 184a 0.81a 
O4/+M/-CC 71a 0.28b 274a 0.70a 
O4/+M/+CC 54a 0.38b 133a 0.53a 
O2/+M/+CC 80a 0.39c 205a 0.80a 
Foulum 
Fertilizer type effect 
C4/+IF/-CC 92a 0.95a 96a 0.56a 
O4/+M/-CC 68a 0.50b 134a 0.63b 
O4/+M/+CC 81a 0.63c 130a 0.75b 
O2/+M/+CC 63a 0.58bc 108a 0.62b 
Chirinda et al. 2010b: Agric. Ecosyst Environ. 15
0 20 40 60 80 
% WFPS 
80 
N2O flux (μg N m-2 h-1) 
60 
40 
20 
0 
<10 kg NO3-N ha-1 
>10 kg NO3-N ha-1 
Regulation of soil N2O 
emissions at Foulum 
WFPS 
Temperature 
Interactions between soil NO3 
- & 
• soil C 
• WFPS 
• temperature 
log(N2O) = 1.86 – 0.0029 W – 0.0081T – 0.152 C  log(N) + 0.0096 W  log(N) + 0.069 T  log(N) 
Chirinda et al. 2010b: Agric. Ecosyst. Environ. 16
Conclusions 
• Restricted availability of N did not significantly reduce N2O 
emissions from low-input organically managed systems: 
hypothesis is rejected 
• In the organic systems, high N2O emissions per N applied 
and low yields are challenges that need to be addressed 
• Avoid high soil mineral N concentrations 
17
Hypothesis 
At their current stage of development, both 
MoBiLE-DNDC and FASSET are capable of 
adequately simulating soil N2O emissions from 
arable cropping systems fertilized using either 
organic or inorganic sources of N 
18
Models 
MoBiLE (Modular Biosphere Simulation Environment): 
• Framework enables flexible integration of different sub-models 
- Sub-models the MoBiLE-DNDC used: 
- soil physics, water cycling & biochemistry (PnET-N-DNDC) 
- crop growth & management (agriculture-DNDC 9.2) 
• Eight soil organic matter pools 
• N2O produced through “anaerobic balloon“ concept 
Farm Assessment Tool (FASSET): 
• Soil-plant-atmosphere sub-models 
• Seven soil organic matter pools 
• N2O produced through “Hole-in-the-Pipe“ concept 
19
”Anaerobic balloon” concept 
• Eh 350 to 250 mV 
N2O 
Anaerobic 
microsites 
NO3 NO2 NO N2O N2 
NO3 NO2 NH4 
Aerobic 
microsites 
NO 
20
”Hole-in-the-Pipe” concept 
N2:N2O N2:N2O 
• N2O production: nitrification and denitrification by applying semi-empirical 
functions regulated by environmental factors 
• Potential N2O emission divided into N2 and N2O emission using semi-empirical 
relations as controlled by soil physical properties and depth 
• Proportions N2O emitted remain constant at specific moisture content 
21
Soil N2O 
emissions 
Daily flux Cumulative flux 
4 
3 
2 
1 
0 
4 
3 
2 
1 
0 
4 
3 
2 
1 
0 
-1 
120 
100 
80 
60 
40 
20 
0 
120 
100 
80 
60 
40 
20 
0 
120 
100 
80 
60 
40 
20 
0 
120 
100 
80 
60 
40 
20 
0 
Oct-07 Feb-08 Jun-08 
-1 
-1 
4 
3 
2 
1 
0 
-1 
Oct-07 Feb-08 Jun-08 
MoBiLE-DNDC 
FASSET 
Measured 
C4/+IF/-CC 
O4/+M/-CC 
O4/+M/+CC 
O2/+M/+CC 
N2O fluxes (g N ha-1 d-1) 
Cum. N2O emissions (kg N ha-1) 
Oct 08 Oct 08 
Chirinda et al. 2010: Plant and Soil 22
Findings 
• Both models simulated N2O emissions from the 
inorganic fertilizer-based system fairly well 
• FASSET overestimated N2O emissions in organic 
systems, especially systems that included catch crops 
23
Carbon footprint using a Life Cycle 
Approach 
Knudesen et al 2014: Journal of Cleaner production 24
• C-footprints per kg Findings 
DM conventional = 
organic rotation 
• Including legumes - 
fermenting them in 
biogas plants & spread 
them for plant 
nutrition - 
significantly lowers C - 
footprint per kg cash 
crop DM 
Contributions to C-footprint per unit per kg cash crop DM 
at farm gate 
25
The Present 
• Laboratory processes 
• Proposals 
• Capacity building 
26
Laboratory processes 
• Duration of sample 
storage 
• Diurnal variation of 
GHG emissions 
• Sampling chambers: for 
rainfed crops and also 
for flooded rice systems 
0 20 40 60 80 100 120 140 160 
Methane 
0 20 40 60 80 100 120 140 160 
Day 
2500 
2000 
1500 
1000 
CH4 ppm 
500 
12 
10 
8 
2 
0 
Carbon dioxide 
Day 
CO2 ppm 
0 
Nitrous oxide 
0 20 40 60 80 100 120 140 160 
Day 
N2O ppm 
2 
1 
0 
Loaiza et al. (unpublished) 
27
Capacity building 
• Friday Science 
• MSc Students – funded by SAMPLES, 
CLIFF Network, Medellin University 
• Global Research Alliance (CIAT 
technical hub for paddy Rice Latin 
America Sub-group); 
28
Proposals 
• Mitigation Options to Reduce Methane 
Emissions in Paddy Rice- funded by CCAC 
• LivestockPlus: Supporting low emissions 
development planning in the Latin 
American cattle sector -CCAFS (revised and 
submitted) 
• GreenRice (submitted) 
• Vinnase and GHG emissions (requested) 
• Enteric methane emissions (submitted) 
29
The Future 
• Improved temporal 
resolution of 
measurements 
• Co-designing for eco-efficient 
farms (smart 
farms) 
• Regional partnerships 
and GHG networks 
30
Take home message 
Capacities I bring to the SOILS 
team and CIAT table 
• Methodology improvement 
• Soil science 
• Crop production 
• Greenhouse gas emissions 
• Modelling 
• Life cycle assessments 31

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Advancing Soils Research Towards Smarter Agricultural Systems

  • 1. TOWARDS SMARTER AGRICULTURAL SYSTEMS: PAST, PRESENT AND ENVISAGED FUTURE SOILS RESEARCH Ngonidzashe Chirinda Soils Research Area (Scientist- Soils and Climate Change) 1
  • 2. Presentation Agenda • Past: Laboratory methodologies, soil properties, crop production, GHG emissions, Life cycle assessments and modelling • Present: Laboratory and field processes and capacity building • Future: Advanced analytical infrastructure, low emission farms, regional networks and partnerships 2
  • 3. The Past • Post-cold-storage conditioning time affects soil denitrifying enzyme activity • Soil properties and crop production • Soil GHG emissions • Modelling • Life cycle assessment: C-footprint of cropping systems 3
  • 4. Post-cold storage conditioning time affects soil denitrifying enzyme activity DEA assay basis: soil enzyme concentration directly proportional to denitrification rates when no other factors are limiting - nitrate reductase 2NO3 - nitrite reductase 2NO2 2NO nitric oxide reductase N2O nitrous oxide reductase N2 4
  • 5. Hypothesis: Conditioning time (post-cold storage warming-up time prior to soil analysis) significantly influences results obtained through the denitrifier enzyme activity (DEA) assay. 5
  • 6. Findings • Fluctuation of DEA post-cold- storage • Standardization of procedures – overnight warming Chirinda et al. 2011: Commun. Soil Sci. Plant Analy. 6
  • 7. Organic fertilizer Inorganic fertilizer CO2 Microbial biomass + NH4 - NO3 - Soil organic matter N2 N2O NO2 Mineralization - NO2 Nitrification Denitrification NO Immobilization •C availability •Anaerobicity •Residence time •NO3 - availability 7
  • 8. Conventional C4/+IF/-CC spring barley faba bean potato winter wheat Organic O4/+M/-CC spring barley faba bean potato winter wheat Organic O4/-M/+CC spring barleyCC faba beanCC potato winter wheatCC Organic O4/+M/+CC spring barleyCC faba beanCC potato winter wheatCC Organic O2/+M/+CC spring barleyCC ley potato winter wheatCC Catch crops: Ryegrass, chicory, red and white clover Ley: Ryegrass, red and white clover 8
  • 9. Hypothesis Increased C inputs via crop residues, catch crops and manure would have positive and additive effects on soil C storage and microbial activity leading to improved N availability and crop productivity. 9
  • 10. Pearson correlation coefficients (r) between different variables in soils under winter wheat C input SOC Resp. MBN PMN PAO DEA N2O Dp/Do C input SOC Resp. 0.95*** MBN 0.65* 0.70* PMN 0.71* 0.75* 0.90** PAO 0.85** 0.74* 0.61† DEA 0.74* 0.64* N2O −0.59† −0.60† −0.60† Dp/Do BD −0.73* 0.73* −0.55† †,*, **,*** P<0.10, P<0.05, P<0.01, P<0.001, respectively. 10 Chirinda et al. 2010a: Agric. Ecosystem Environ.
  • 11. Grain (t ha-1) and Nitrogen (kg N ha-1) yields at harvest System Grain N Grain N ___winter wheat___ _____spring barley___ Fertilizer type effect C4/+IF/−CC 9.5a 164a 5.5a 104a O4/+M/−CC 5.0b 71b 3.3b 53b O4/−M/+CC 2.8c 39c 4.5c 74c O4/+M/+CC 6.3b 98b 5.2a 91a O2/+M/+CC 5.8b 87b 5.7a 99a Manure effect Chirinda et al. 2010a: Agric. Ecosyst. Environ. 11
  • 12. Conclusions • The hypothesis that increased C (and N) inputs increase microbial activity, N availability and crop productivity is accepted • There was no evidence for additive effects on soil C storage 12
  • 13. Greenhouse gas emissions Agriculture roles to climate change Victim: productivity influenced by temp. rise Source: contributes to release of three greenhouse gases CO2, CH4 and N2O Solution: significant amounts of CO2 can be absorbed through photosynthesis 13
  • 14. Hypothesis Restricted availability of N in organically managed systems leads to lower N2O emissions compared to the inorganic fertilizer-based systems receiving higher N inputs. 14
  • 15. Winter wheat yields, cumulative and relative soil N2O emissions Cum. N2O emission Grain yield Emissions per yield Emissions per N applied Site/system mg N m-2 kg DM m-2 mg N2O-N kg-1 DM kg N2O-N 100 kg-1 N Flakkebjerg C4/+IF/-CC 137a 0.76a 184a 0.81a O4/+M/-CC 71a 0.28b 274a 0.70a O4/+M/+CC 54a 0.38b 133a 0.53a O2/+M/+CC 80a 0.39c 205a 0.80a Foulum Fertilizer type effect C4/+IF/-CC 92a 0.95a 96a 0.56a O4/+M/-CC 68a 0.50b 134a 0.63b O4/+M/+CC 81a 0.63c 130a 0.75b O2/+M/+CC 63a 0.58bc 108a 0.62b Chirinda et al. 2010b: Agric. Ecosyst Environ. 15
  • 16. 0 20 40 60 80 % WFPS 80 N2O flux (μg N m-2 h-1) 60 40 20 0 <10 kg NO3-N ha-1 >10 kg NO3-N ha-1 Regulation of soil N2O emissions at Foulum WFPS Temperature Interactions between soil NO3 - & • soil C • WFPS • temperature log(N2O) = 1.86 – 0.0029 W – 0.0081T – 0.152 C  log(N) + 0.0096 W  log(N) + 0.069 T  log(N) Chirinda et al. 2010b: Agric. Ecosyst. Environ. 16
  • 17. Conclusions • Restricted availability of N did not significantly reduce N2O emissions from low-input organically managed systems: hypothesis is rejected • In the organic systems, high N2O emissions per N applied and low yields are challenges that need to be addressed • Avoid high soil mineral N concentrations 17
  • 18. Hypothesis At their current stage of development, both MoBiLE-DNDC and FASSET are capable of adequately simulating soil N2O emissions from arable cropping systems fertilized using either organic or inorganic sources of N 18
  • 19. Models MoBiLE (Modular Biosphere Simulation Environment): • Framework enables flexible integration of different sub-models - Sub-models the MoBiLE-DNDC used: - soil physics, water cycling & biochemistry (PnET-N-DNDC) - crop growth & management (agriculture-DNDC 9.2) • Eight soil organic matter pools • N2O produced through “anaerobic balloon“ concept Farm Assessment Tool (FASSET): • Soil-plant-atmosphere sub-models • Seven soil organic matter pools • N2O produced through “Hole-in-the-Pipe“ concept 19
  • 20. ”Anaerobic balloon” concept • Eh 350 to 250 mV N2O Anaerobic microsites NO3 NO2 NO N2O N2 NO3 NO2 NH4 Aerobic microsites NO 20
  • 21. ”Hole-in-the-Pipe” concept N2:N2O N2:N2O • N2O production: nitrification and denitrification by applying semi-empirical functions regulated by environmental factors • Potential N2O emission divided into N2 and N2O emission using semi-empirical relations as controlled by soil physical properties and depth • Proportions N2O emitted remain constant at specific moisture content 21
  • 22. Soil N2O emissions Daily flux Cumulative flux 4 3 2 1 0 4 3 2 1 0 4 3 2 1 0 -1 120 100 80 60 40 20 0 120 100 80 60 40 20 0 120 100 80 60 40 20 0 120 100 80 60 40 20 0 Oct-07 Feb-08 Jun-08 -1 -1 4 3 2 1 0 -1 Oct-07 Feb-08 Jun-08 MoBiLE-DNDC FASSET Measured C4/+IF/-CC O4/+M/-CC O4/+M/+CC O2/+M/+CC N2O fluxes (g N ha-1 d-1) Cum. N2O emissions (kg N ha-1) Oct 08 Oct 08 Chirinda et al. 2010: Plant and Soil 22
  • 23. Findings • Both models simulated N2O emissions from the inorganic fertilizer-based system fairly well • FASSET overestimated N2O emissions in organic systems, especially systems that included catch crops 23
  • 24. Carbon footprint using a Life Cycle Approach Knudesen et al 2014: Journal of Cleaner production 24
  • 25. • C-footprints per kg Findings DM conventional = organic rotation • Including legumes - fermenting them in biogas plants & spread them for plant nutrition - significantly lowers C - footprint per kg cash crop DM Contributions to C-footprint per unit per kg cash crop DM at farm gate 25
  • 26. The Present • Laboratory processes • Proposals • Capacity building 26
  • 27. Laboratory processes • Duration of sample storage • Diurnal variation of GHG emissions • Sampling chambers: for rainfed crops and also for flooded rice systems 0 20 40 60 80 100 120 140 160 Methane 0 20 40 60 80 100 120 140 160 Day 2500 2000 1500 1000 CH4 ppm 500 12 10 8 2 0 Carbon dioxide Day CO2 ppm 0 Nitrous oxide 0 20 40 60 80 100 120 140 160 Day N2O ppm 2 1 0 Loaiza et al. (unpublished) 27
  • 28. Capacity building • Friday Science • MSc Students – funded by SAMPLES, CLIFF Network, Medellin University • Global Research Alliance (CIAT technical hub for paddy Rice Latin America Sub-group); 28
  • 29. Proposals • Mitigation Options to Reduce Methane Emissions in Paddy Rice- funded by CCAC • LivestockPlus: Supporting low emissions development planning in the Latin American cattle sector -CCAFS (revised and submitted) • GreenRice (submitted) • Vinnase and GHG emissions (requested) • Enteric methane emissions (submitted) 29
  • 30. The Future • Improved temporal resolution of measurements • Co-designing for eco-efficient farms (smart farms) • Regional partnerships and GHG networks 30
  • 31. Take home message Capacities I bring to the SOILS team and CIAT table • Methodology improvement • Soil science • Crop production • Greenhouse gas emissions • Modelling • Life cycle assessments 31