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Upland Rice Breeding in Brazil: 
  Progress and Perspectives

                                Flavio Breseghello
               Head of Research and Development
                         Embrapa Rice and
                         Embrapa Rice and Beans
                    Santo Antônio de Goiás, Brazil
Amount of Rice Produced in Upland and
     Irrigated Systems in Brazil
         g      y
      14000


      12000

                                                                                                                                                                         20%
      10000


             8000
                       55%
                                                       Production Upland
    ,000 t
 x 1,




             6000


             4000

                                                         Production Irrigated
             2000


               0
                    1986
                       6
                           1987
                              7
                                  1988
                                     8
                                         1989
                                            9
                                                1990
                                                   0
                                                       1991
                                                          1
                                                              1992
                                                                 2
                                                                     1993
                                                                        3
                                                                            1994
                                                                               4
                                                                                   1995
                                                                                      5
                                                                                          1996
                                                                                             6
                                                                                                 1997
                                                                                                    7
                                                                                                        1998
                                                                                                           8
                                                                                                               1999
                                                                                                                  9
                                                                                                                      2000
                                                                                                                         0
                                                                                                                             2001
                                                                                                                                1
                                                                                                                                    2002
                                                                                                                                       2
                                                                                                                                           2003
                                                                                                                                              3
                                                                                                                                                  2004
                                                                                                                                                     4
                                                                                                                                                         2005
                                                                                                                                                            5
                                                                                                                                                                2006
                                                                                                                                                                   6
                                                                                                                                                                       2007
                                                                                                                                                                          7
                                                                                                                                                                              2008
                                                                                                                                                                                 8
                                                                                                                                                                                     2009
                                                                                                                                                                                        9
Variation of Area Planted and Yield of
 Upland and Irrigated Rice in Brazil
   p             g
      7000
                                                                                                                                           Yield Irrigated
                                                                                                                                                     g
      6000


      5000


      4000
    000 ha




                         80%
      3000
                                                 Area Upland
x 1,0




                                                                                                                         Yield Upland                                                       50%
      2000


      1000
                                                                                                                                 Area Irrigated
             0
                 1 986
                         1 987
                                 1 988
                                         1 989
                                                 1 990
                                                         1 991
                                                                 1 992
                                                                         1 993
                                                                                 1 994
                                                                                         1 995
                                                                                                 1 996
                                                                                                         1 997
                                                                                                                 1 998
                                                                                                                         1 999
                                                                                                                                 2 000
                                                                                                                                         2 001
                                                                                                                                                 2 002
                                                                                                                                                         2 003
                                                                                                                                                                 2 004
                                                                                                                                                                         2 005
                                                                                                                                                                                 2 006
                                                                                                                                                                                         2 007
                                                                                                                                                                                                 2 008
                                                                                                                                                                                                         2 009
Opportunities for Sustainable Upland
         Rice Production
         Rice Production
                 Sprinkler 
                 Sprinkler
                 Irrigation


              Crop‐livestock‐
             forest integration



           Pasture renovation


            Crop rotation
Upland Rice in No‐Tillage System
       Rice in No Tillage


                              North of
                              N h f
                           Mato Grosso
                               3.5 t/ha




        45 cm
        45 cm
Importance of Drought Tolerance




Soil water storage             Soil water storage
capacity: 30 mm                capacity: 50 mm



                     Low Risk (20%)
                     Intermediate Risk (50%)
                     High Risk ( %)
                               (80%)
Drought Phenotyping in the Field
      (
      (Porangatu Station)
            g           )
Drought Phenotyping in Soil Columns
Paper accepted for publication in Crop Science

PROGRESS OF 25 YEARS OF UPLAND
            25 YEARS OF UPLAND 
RICE BREEDING IN BRAZIL 
Data from records of 26 years
     Year         Number of trials   Total number of   Number of new   Number of field
                                       lines tested      lines from       plots
                                                          Embrapa
                                                          E b
     1984               12                 54                 37            700
     1985               38                 58                 26            2052
     1986               19                 77                 40            1358
     1987               10                 67                 9             674
     1988               23                 54                 4             1484
     1989               10                 34                 9             792
     1990               8                  32                 16            450
     1991               16                 34                 3             1060
     1992               15                 60                 23            944
     1993               24                 79                 24            1477
     1994               19                 44                 9             1536
     1995               39                 49                 12            2597
     1996               22                 28                 6             2046
     1997               26                 32                 13            2143
     1998               33                 37                 21            2552
     1999               32                 42                 16            2485
     2000               34                 45                 16            2756
     2001               24                 34                 15            2297
     2002               18                 28                 9             1819
     2003               27                 28                 9             2733
     2004               26                 25                 10            2408
     2005               27                 26                 13            2299
     2006               18                 28                 13            1830
     2007               25                 18                 5             1520
     2008               31                 17                 6             1841
     2009               27                 23                 12            1835
Arithmetic Mean        23.2               40.5              14.5           1,757
     Total             603                493                376           45,688
Statistical Analysis

Group j: set of lines debuting in VCU in year j

Mixed model: 
   “Group” fixed, all other factors random
                Yijkmn = μ + gj + li/gj + ak + tm/ak + bn/atkm + εijkmn
   BLUE of Group means
   BLUP of lines
         f


Generalized Linear Regression:
                           θ = (X` V‐1 X)‐1 (X` V‐1 Y)
                                   θ = [α, β]
                       β is the genetic gain per year
                                g         g p y
Results: Change in Grain Type
Factors Restraining Genetic Gain for GY


• Very strict grain quality parameters
                            parameters.

• Non durable blast disease resistance
  Non‐durable               resistance.

• Too b d target population of environments.
      broad          l       f
Factors Accelerating Genetic Gain for GY 

• Early selection for grain yield.

• Recombination of high‐yielding families.

• Homogenization of cycle duration, plant
  height and grain type, allowing stronger
  selection pressure on grain yield
                              yield.
The Rice Breeding Scheme
                        Generation   Traits             N. of      Type of exp.
                                                       materials
                           Crosses                         200       ||||||
     tion populatioon
                                                           200
     ite recurrent 

                          F2 – ERC     YIELD


                          F3 – VS1     BLAST               20        ::::::::::
                                       PLANT TYPE
select




                                                          1000
   Eli




                          F4 – EOF     BLAST                       |||||||||...||
                                                                   ||||||||| ||




                                                                                    Cultivar deve
                                       GRAIN QUALITY

                          F3:5 – ERF   YIELD               250
                                       GRAIN QUALITY




                                                                                                elopment
                          F3:6 – VS2   BLAST               50         ::::::::::

                                       PLANT TYPE                  |||||||||...||
                          F7 – EOL     BLAST              2000

                                       YIELD
                          F6:8 –
                          F6 8 EP      GRAIN QUALITY       500

                                       YIELD
                          F6:9 – ER    GRAIN QUALITY       50

                                       YIELD
                         F6:10 –
                         F6 10 VCU     GRAIN QUALITY       10
The Recurrent Selection Approach




IRRN, v. 34, 4 p. 2009
The same methods are being applied to
                      are being          to 
irrigated lowland rice, with similar results:
LINE                                        CROSS   GY (kg/ha)
BRA 040081 (BRS Pampa)          IRGA 417/CNA7830     12,984 a
BRA 040079
BRA 040079                      IRGA 417/CNA7830
                                IRGA 417/CNA7830     11,994 a
                                                     11,994 a
BRA 040311                      JAVAÉ/CNAi9039       11,793 a
BRA 040257                      DIAMANTE/CNA8642     11,583 a
BRA 040075                      IRGA 417/CNA7830     11,320 a
BRA 040286                      IRGA 417/CNA7830     11,235 a
BRA 040308                      TAIM/CNAi9050        11,208 a
BRA 040307                      TAIM/CNAi9050        10,918 a
BRA 040272
BRA 040272                      IR22/CNA8502         10,917 a
                                                     10 917 a
Mean of Checks
(BR‐IRGA 409, IRGA 417, BRS 7 Taim, BRS 6 Chuí)      8,589 c
BRS Sertaneja
BRS Sertaneja
Upland Rice Breeding: 
             The Way Forward
                    y
• Improve drought tolerance through better root system.
• Ad t t
  Adapt to no‐till and wider row spacing.
               till d id               i
• Explore the genetic diversity for biotic and abiotic stress 
  tolerance.
  tolerance
• Implement MAS for blast resistance and grain quality.
• T t and i
  Test d incorporate strategic t
                     t t t i transgenics or mutants. 
                                           i        t t
• Develop aerobic rice hybrids.
The Brazilian Rice Breeding Project
  (Leader: Dr. Orlando Peixoto de Morais)
                                        )




The 2009 – 2013 project includes:
                p j
• 10 Embrapa Centers: 
   CNPAF, CPACT, CPAO, CPAF‐RO, CPATU, CPAA, CPAF‐RR, CPAMN, 
     CENARGEN, SNT
• 6 State Institutions: 
   IRGA, EPAGRI, EPAMIG, EMPAER‐MT, SEAGRO‐TO, SEAGRO‐GO
   IRGA EPAGRI EPAMIG EMPAER MT SEAGRO TO SEAGRO GO
• 7 Universities: 
   UFLA, UFG, UFSM, UFT, UNITINS, URCAMP, UNIPAMPA.
   UFLA, UFG, UFSM, UFT, UNITINS, URCAMP, UNIPAMPA.

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Progress of Upland Rice Breeding in Brazil

  • 1. Upland Rice Breeding in Brazil:  Progress and Perspectives Flavio Breseghello Head of Research and Development Embrapa Rice and Embrapa Rice and Beans Santo Antônio de Goiás, Brazil
  • 2. Amount of Rice Produced in Upland and Irrigated Systems in Brazil g y 14000 12000 20% 10000 8000 55% Production Upland ,000 t x 1, 6000 4000 Production Irrigated 2000 0 1986 6 1987 7 1988 8 1989 9 1990 0 1991 1 1992 2 1993 3 1994 4 1995 5 1996 6 1997 7 1998 8 1999 9 2000 0 2001 1 2002 2 2003 3 2004 4 2005 5 2006 6 2007 7 2008 8 2009 9
  • 3. Variation of Area Planted and Yield of Upland and Irrigated Rice in Brazil p g 7000 Yield Irrigated g 6000 5000 4000 000 ha 80% 3000 Area Upland x 1,0 Yield Upland 50% 2000 1000 Area Irrigated 0 1 986 1 987 1 988 1 989 1 990 1 991 1 992 1 993 1 994 1 995 1 996 1 997 1 998 1 999 2 000 2 001 2 002 2 003 2 004 2 005 2 006 2 007 2 008 2 009
  • 4. Opportunities for Sustainable Upland Rice Production Rice Production Sprinkler  Sprinkler Irrigation Crop‐livestock‐ forest integration Pasture renovation Crop rotation
  • 5. Upland Rice in No‐Tillage System Rice in No Tillage North of N h f Mato Grosso 3.5 t/ha 45 cm 45 cm
  • 6. Importance of Drought Tolerance Soil water storage Soil water storage capacity: 30 mm capacity: 50 mm Low Risk (20%) Intermediate Risk (50%) High Risk ( %) (80%)
  • 7. Drought Phenotyping in the Field ( (Porangatu Station) g )
  • 9. Paper accepted for publication in Crop Science PROGRESS OF 25 YEARS OF UPLAND 25 YEARS OF UPLAND  RICE BREEDING IN BRAZIL 
  • 10. Data from records of 26 years Year Number of trials Total number of Number of new Number of field lines tested lines from plots Embrapa E b 1984 12 54 37 700 1985 38 58 26 2052 1986 19 77 40 1358 1987 10 67 9 674 1988 23 54 4 1484 1989 10 34 9 792 1990 8 32 16 450 1991 16 34 3 1060 1992 15 60 23 944 1993 24 79 24 1477 1994 19 44 9 1536 1995 39 49 12 2597 1996 22 28 6 2046 1997 26 32 13 2143 1998 33 37 21 2552 1999 32 42 16 2485 2000 34 45 16 2756 2001 24 34 15 2297 2002 18 28 9 1819 2003 27 28 9 2733 2004 26 25 10 2408 2005 27 26 13 2299 2006 18 28 13 1830 2007 25 18 5 1520 2008 31 17 6 1841 2009 27 23 12 1835 Arithmetic Mean 23.2 40.5 14.5 1,757 Total 603 493 376 45,688
  • 11. Statistical Analysis Group j: set of lines debuting in VCU in year j Mixed model:  “Group” fixed, all other factors random Yijkmn = μ + gj + li/gj + ak + tm/ak + bn/atkm + εijkmn BLUE of Group means BLUP of lines f Generalized Linear Regression: θ = (X` V‐1 X)‐1 (X` V‐1 Y) θ = [α, β] β is the genetic gain per year g g p y
  • 13. Factors Restraining Genetic Gain for GY • Very strict grain quality parameters parameters. • Non durable blast disease resistance Non‐durable resistance. • Too b d target population of environments. broad l f
  • 14. Factors Accelerating Genetic Gain for GY  • Early selection for grain yield. • Recombination of high‐yielding families. • Homogenization of cycle duration, plant height and grain type, allowing stronger selection pressure on grain yield yield.
  • 15. The Rice Breeding Scheme Generation   Traits  N. of  Type of exp. materials Crosses 200 |||||| tion populatioon 200 ite recurrent  F2 – ERC  YIELD F3 – VS1   BLAST 20 :::::::::: PLANT TYPE select 1000 Eli F4 – EOF BLAST |||||||||...|| ||||||||| || Cultivar deve GRAIN QUALITY F3:5 – ERF YIELD 250 GRAIN QUALITY elopment F3:6 – VS2 BLAST 50 :::::::::: PLANT TYPE |||||||||...|| F7 – EOL  BLAST 2000 YIELD F6:8 – F6 8 EP GRAIN QUALITY 500 YIELD F6:9 – ER GRAIN QUALITY 50 YIELD F6:10 – F6 10 VCU GRAIN QUALITY 10
  • 16. The Recurrent Selection Approach IRRN, v. 34, 4 p. 2009
  • 17. The same methods are being applied to are being to  irrigated lowland rice, with similar results: LINE CROSS GY (kg/ha) BRA 040081 (BRS Pampa) IRGA 417/CNA7830 12,984 a BRA 040079 BRA 040079 IRGA 417/CNA7830 IRGA 417/CNA7830 11,994 a 11,994 a BRA 040311 JAVAÉ/CNAi9039 11,793 a BRA 040257 DIAMANTE/CNA8642 11,583 a BRA 040075 IRGA 417/CNA7830 11,320 a BRA 040286 IRGA 417/CNA7830 11,235 a BRA 040308 TAIM/CNAi9050 11,208 a BRA 040307 TAIM/CNAi9050 10,918 a BRA 040272 BRA 040272 IR22/CNA8502 10,917 a 10 917 a Mean of Checks (BR‐IRGA 409, IRGA 417, BRS 7 Taim, BRS 6 Chuí) 8,589 c
  • 19. Upland Rice Breeding:  The Way Forward y • Improve drought tolerance through better root system. • Ad t t Adapt to no‐till and wider row spacing. till d id i • Explore the genetic diversity for biotic and abiotic stress  tolerance. tolerance • Implement MAS for blast resistance and grain quality. • T t and i Test d incorporate strategic t t t t i transgenics or mutants.  i t t • Develop aerobic rice hybrids.
  • 20. The Brazilian Rice Breeding Project (Leader: Dr. Orlando Peixoto de Morais) ) The 2009 – 2013 project includes: p j • 10 Embrapa Centers:  CNPAF, CPACT, CPAO, CPAF‐RO, CPATU, CPAA, CPAF‐RR, CPAMN,  CENARGEN, SNT • 6 State Institutions:  IRGA, EPAGRI, EPAMIG, EMPAER‐MT, SEAGRO‐TO, SEAGRO‐GO IRGA EPAGRI EPAMIG EMPAER MT SEAGRO TO SEAGRO GO • 7 Universities:  UFLA, UFG, UFSM, UFT, UNITINS, URCAMP, UNIPAMPA. UFLA, UFG, UFSM, UFT, UNITINS, URCAMP, UNIPAMPA.