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The Importance of Open Science to
Human Health
Philip E. Bourne, PhD
Associate Director for Data Science
National Institutes Health
OpenCon
November 16, 2014
1918 Spanish Influenza Ward at Camp
Funston, Kansas
http://www.army.mil/-images/2008/09/24/22729/army.mil-2008-09-25-103608.jpg
A Few Details
 3-6% of the world’s population died – 50-100,000,000
 It was called Spanish flu because Spain reported true
mortality data and it was mistakenly considered the
origin
 At a time of war information was not openly shared
regarding the pandemic
Pandemic Modeling is Important:
The Story of Meredith
http://fora.tv/2012/04/20/Congress_Unplugged_
Phil_Bourne
We Have Seen Amazing Advances..
But…
World Climate Report 2011
CIA World Fact Book
Notwithstanding we need to do
better…
Some Current Healthcare
Shortcomings
 Number of drugs is too small and time to market too
long
 Rare diseases are ignored
 Clinical trials are too limited in the number of patients
and too expensive
 Education & training does not match well to current
market needs
 Research is not cost effective
– Not easily replicated
– Too slow to disseminate
The NIH Has Been a
Leader in Open Science
We are entering an era of
further disruption
Mission Statement
To foster an OPEN ecosystem that
enables biomedical* research to be
conducted as a digital enterprise that
enhances health, lengthens life and
reduces illness and disability
* Includes biological, biomedical, behavioral, social,
environmental, and clinical studies that relate to understanding
health and disease.
Elements of The Ecosystem
Community
Policy
Infrastructure
• Sustainability
• Collaboration
• Training
Elements of The Ecosystem
Community
Policy
Infrastructure
• Sustainability
Collaboration
• Training
Virtuous
Research
Cycle
Policies – Now & Forthcoming
 Data Sharing
– Genomic data sharing announced
– Data sharing plans on all research awards
– Data sharing plan enforcement
• Machine readable plan
• Repository requirements to include grant numbers
http://www.nih.gov/news/health/aug2014/od-27.htm
Policies - Forthcoming
 Data Citation
– Goal: legitimize data as a form of scholarship
– Process:
• Machine readable standard for data citation (done)
• Endorsement of data citation for inclusion in NIH bib
sketch, grants, reports, etc.
• Example formats for human readable data citations
• Slowly work into NLM/NCBI workflow
Infrastructure - The Commons
http://100plus.com/wp-content/uploads/Data-Commons-3-
1024x825.png
Community – BD2K Awards –
Dedicated to Sharing
1) Build an OPEN digital framework for data
science training:
NIH Data Science Workforce Development Center
1) Develop short-term training opportunities:
Courses, educational resources, etc.
1) Develop the discipline of biomedical data
science and support cross-training – OPEN
courseware
Community: Training
Data Science Training Goals
All goals have a diversity component and manate
You have the power to make a
difference…
Either directly or indirectly through
your health care information
NIHNIH……
Turning Discovery Into HealthTurning Discovery Into Health
Come Join Us!Come Join Us!
philip.bourne@nih.gov

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The Importance of Open Science to Human Health

  • 1. The Importance of Open Science to Human Health Philip E. Bourne, PhD Associate Director for Data Science National Institutes Health OpenCon November 16, 2014
  • 2. 1918 Spanish Influenza Ward at Camp Funston, Kansas http://www.army.mil/-images/2008/09/24/22729/army.mil-2008-09-25-103608.jpg
  • 3. A Few Details  3-6% of the world’s population died – 50-100,000,000  It was called Spanish flu because Spain reported true mortality data and it was mistakenly considered the origin  At a time of war information was not openly shared regarding the pandemic
  • 4. Pandemic Modeling is Important: The Story of Meredith http://fora.tv/2012/04/20/Congress_Unplugged_ Phil_Bourne
  • 5. We Have Seen Amazing Advances.. But… World Climate Report 2011 CIA World Fact Book
  • 6. Notwithstanding we need to do better…
  • 7. Some Current Healthcare Shortcomings  Number of drugs is too small and time to market too long  Rare diseases are ignored  Clinical trials are too limited in the number of patients and too expensive  Education & training does not match well to current market needs  Research is not cost effective – Not easily replicated – Too slow to disseminate
  • 8. The NIH Has Been a Leader in Open Science
  • 9. We are entering an era of further disruption
  • 10. Mission Statement To foster an OPEN ecosystem that enables biomedical* research to be conducted as a digital enterprise that enhances health, lengthens life and reduces illness and disability * Includes biological, biomedical, behavioral, social, environmental, and clinical studies that relate to understanding health and disease.
  • 11.
  • 12. Elements of The Ecosystem Community Policy Infrastructure • Sustainability • Collaboration • Training
  • 13. Elements of The Ecosystem Community Policy Infrastructure • Sustainability Collaboration • Training Virtuous Research Cycle
  • 14. Policies – Now & Forthcoming  Data Sharing – Genomic data sharing announced – Data sharing plans on all research awards – Data sharing plan enforcement • Machine readable plan • Repository requirements to include grant numbers http://www.nih.gov/news/health/aug2014/od-27.htm
  • 15. Policies - Forthcoming  Data Citation – Goal: legitimize data as a form of scholarship – Process: • Machine readable standard for data citation (done) • Endorsement of data citation for inclusion in NIH bib sketch, grants, reports, etc. • Example formats for human readable data citations • Slowly work into NLM/NCBI workflow
  • 16. Infrastructure - The Commons http://100plus.com/wp-content/uploads/Data-Commons-3- 1024x825.png
  • 17. Community – BD2K Awards – Dedicated to Sharing
  • 18. 1) Build an OPEN digital framework for data science training: NIH Data Science Workforce Development Center 1) Develop short-term training opportunities: Courses, educational resources, etc. 1) Develop the discipline of biomedical data science and support cross-training – OPEN courseware Community: Training Data Science Training Goals All goals have a diversity component and manate
  • 19. You have the power to make a difference… Either directly or indirectly through your health care information
  • 20. NIHNIH…… Turning Discovery Into HealthTurning Discovery Into Health Come Join Us!Come Join Us! philip.bourne@nih.gov