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Publicly Available Secondary Data Sources: An
Overview and an Example from Two Data Sources
Marion R Sills, MD, MPH
Department of Pediatrics, University of Colorado School of Medicine
Goals
How do I find secondary data sets?
Once I find one, how do I know it’s
right for me and my research
question?
Example of a secondary data
analysis
Goals
How do I find secondary data sets?
Once I find one, how do I know it’s
right for me and my research
question?
Example of a secondary data
analysis
Health Data Online
Agency for Healthcare Research and Quality (A
CDC WONDER
National Center for Health Statistics (NCHS)
Partners in Information Access for the Public H
Goals
How do I find secondary data sets?
Once I find one, how do I know it’s
right for me and my research
question?
Example of a secondary data
analysis
Goals
Once I find one, how do I know it’s
right for me and my research
question?
What types of questions was it
designed to answer?
What data elements are available?
How can I figure out if those data
elements are useful to me?
Two Examples
HCUP (KID) used for background
statement in a manuscript
NHAMCS and NHANES used for a
full analysis for a manuscript
HCUP--KID
An all-payer inpatient care database
for children in the United States
2006 KID contains data from 6.6
million pediatric hospital discharges
Online data available via HCUPnet
HCUP--KID
Question: What is the utilization of
inpatient resources for asthma
among children?
Use: A background/significance
statement for a grant
NHAMCS/NHANES Analysis Example
Questions:
• What are pediatric norms for the shock
index (SI)?
• Do these predict shock?
Use: Manuscript(s)
Shock Index (SI)
Triage tool
Monitoring tool
No established pediatric normal values
Heart rate (HR)
Systolic Blood Pressure (SBP)
SI =
Background
Elevated SI (> 0.90 adults)
 Blood loss, admissions, ICU interventions, poor outcome
Inverse relationship with LV function
Only 1 pediatric study of SI
 Positive association with mortality
 Reduction in SI during transport was associated with improved
outcome
Initial Objective
To evaluate the utility of shock index in an
emergency department population of children
Utility as an early predictor of patient deterioration
when measured
• Pre-hospital
• At triage
• Sequentially
(Modified) Objective
To evaluate shock index as a predictor for
admission in an emergency department
population of children
SI evaluated independent of HR and SBP
Methods: Data Sources
Healthy Population
 National Health and Nutrition Examination Survey (NHANES)
 1999-2006
Emergency Department Population
 National Hospital Ambulatory Medical Care Survey (NHAMCS
ED)
 2004-2006
Methods: Data sources
NHANES
population
Generate
norms
NHAMCS ED
Population
Address
study
question
Methods: Data sources
NHANES
population
Generate
norms
NHAMCS ED
Population
Address
study
question
No BP in < 8 yr Age limited to 8-21 yr
Methods: Data sources
Healthy
population
Generate
norms
ED
Population
Address
study
question
SI Norms Study: Data Sources
Pediatric Age specific normal values
 Calculate age- and gender-specific
percentiles
 Test of fit of logarithmic trend lines
All-ages population age- and gender
median values
 Calculate percentiles by age,
gender, and pregnancy status
SI Norms Study: Results
NHANES 10,195 patients age 8-17
(41,048,417 weighted)
NHANES 32,819 age 8-85
(251,845,769 weighted)
Results: SI Percentiles in the NHANES Population
[n =13,308 (57.2 million, weighted)]
0.5
0.6
0.7
0.8
0.9
1
1.1
8 9 10 11 12 13 14 15 16 17
Age (y)
ShockIndex
25 %ile
50 %ile
95 %ile
75 %ile
Figure 3: Shock Index Median Value by Gender and Pregnancy
Status, NHANES 1999-2006 Weighted Data, With Moving Average
Trendlines (3-Period)
.45
.50
.55
.60
.65
.70
.75
.80
.85
.90
8 12 16 20 24 28 32 36 40 44 48 52 56 60 64 68 72 76 80 84
Age (y)
ShockIndex
Male
Non-pregnant female
Pregnant
3 per. Mov. Avg. (Non-
pregnant female)
3 per. Mov. Avg. (Male)
3 per. Mov. Avg.
(Pregnant)
SI Norms Study: Conclusions
First report of pediatric age-specific normal values for SI
First report of age and gender SI medians in an all-ages
population
Gender, pregnancy and age contribute to SI
Smooth percentile trends for SI are best expressed as a
logarithmic function
Methods: Data sources
Healthy
population
Generate
norms
ED
Population
Address
study
question
Search for outcome measures
Candidate measures of “shock” Unweighted n, NHAMCS
1999-2006
Traumatic shock (958.4) 0
Non-trauma shock (785.5) 1
Anaphylactic shock (995.0, 995.6) 5
ICU admit 13
Died 9
CPR 6
Admit 848
Methods: Data sources
NHANES
population
Generate
norms
NHAMCS ED
Population
Address
study
question
Age limited to 8-21 yr
Outcome: admission
Methods: Analysis
Logistic regression was used to model the
association between predictor variables and
admission
Primary predictor
•SI > 95th
%
•SI > 0.9
Methods: Analysis
Cut-point for percentiles
Based on frequency distribution in the emergency
department population
• 95th
% for SI and HR
• 25th
% for SBP
Absolute cut-point of SI > 0.9 was based on adult
literature
Methods: Logistic Regression
Model #1 #2
Outcome Admission Admission
1º independent variable SI > 95th
% SI > 0.9
Methods: Logistic Regression
Model #1 #2
Outcome Admission Admission
1º independent variable SI > 95th
% SI > 0.9
Other independent variables HR > 95th
%
SBP < 25th
%
Age, Gender, Race, Ethnicity, Payer
Results: ED population
NHAMCS ED Population
18,147 ED visits
= 58.9 million visits, weighted
Patients age 8-21 years
4 % were admitted
Variable Cut-Point Proportion
SI > 95th
% 14%
SI > 0.9 19%
HR > 95th
% 29%
SBP < 25th
% 6%
SI > 95th
% with normal HR, SBP < 1%
Results: ED population
Results: Bivariate
In bivariate chi-square analyses, SI
was associated with admission (p <
0.0001)
SI > 95th
%
SI > 0.9
Results: Bivariate Analyses
Percent Admitted by SI Cutoff
0%
2%
4%
6%
8%
10%
SI > 95th % SI < 95th % SI > 0.9 SI < 0.9
PercentAdmitted
Results: Bivariate Analyses
Percent Admitted by SI Cutoff
0%
2%
4%
6%
8%
10%
SI > 95th % SI < 95th % SI > 0.9 SI < 0.9
PercentAdmitted
OR = 2.97
p < .0001
OR = 2.63
p < .0001
Model 1: Shock Index > 95th
% for Age and Gender: Outcome =
Admission
OR 95% CI
SI > 95th
% 1.54 1.14 2.08
HR > 95th
% 2.51 1.96 3.21
SBP < 25th
% 1.24 0.87 1.77
Age, gender, race, ethnicity, and payer were not significant
Results: Multivariate Analysis
Model 2: Shock Index > 0.9: Outcome = Admission
OR 95% CI
Shock Index > 0.9 1.50 1.15 1.94
HR > 95th
% 2.50 2.00 3.12
SBP < 25th
% 1.27 0.90 1.79
Age 1.04 1.01 1.07
Results: Multivariate Analysis
Gender, race, ethnicity, and payer were not significant
Limitations
No children under 8 years evaluated
Insufficient numbers
 Abnormal SI with normal HR and SBP
 “Shock” as outcome
Admission based on provider and patient
No ability to assess unscheduled return visits
Conclusions
Shock index predicted hospital admission,
independent of the impact of HR and SBP
Expressed as percentile or absolute value

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Secondary data talk 2010

  • 1. Publicly Available Secondary Data Sources: An Overview and an Example from Two Data Sources Marion R Sills, MD, MPH Department of Pediatrics, University of Colorado School of Medicine
  • 2. Goals How do I find secondary data sets? Once I find one, how do I know it’s right for me and my research question? Example of a secondary data analysis
  • 3. Goals How do I find secondary data sets? Once I find one, how do I know it’s right for me and my research question? Example of a secondary data analysis
  • 4. Health Data Online Agency for Healthcare Research and Quality (A CDC WONDER National Center for Health Statistics (NCHS) Partners in Information Access for the Public H
  • 5. Goals How do I find secondary data sets? Once I find one, how do I know it’s right for me and my research question? Example of a secondary data analysis
  • 6. Goals Once I find one, how do I know it’s right for me and my research question? What types of questions was it designed to answer? What data elements are available? How can I figure out if those data elements are useful to me?
  • 7. Two Examples HCUP (KID) used for background statement in a manuscript NHAMCS and NHANES used for a full analysis for a manuscript
  • 8. HCUP--KID An all-payer inpatient care database for children in the United States 2006 KID contains data from 6.6 million pediatric hospital discharges Online data available via HCUPnet
  • 9. HCUP--KID Question: What is the utilization of inpatient resources for asthma among children? Use: A background/significance statement for a grant
  • 10.
  • 11.
  • 12. NHAMCS/NHANES Analysis Example Questions: • What are pediatric norms for the shock index (SI)? • Do these predict shock? Use: Manuscript(s)
  • 13. Shock Index (SI) Triage tool Monitoring tool No established pediatric normal values Heart rate (HR) Systolic Blood Pressure (SBP) SI =
  • 14. Background Elevated SI (> 0.90 adults)  Blood loss, admissions, ICU interventions, poor outcome Inverse relationship with LV function Only 1 pediatric study of SI  Positive association with mortality  Reduction in SI during transport was associated with improved outcome
  • 15. Initial Objective To evaluate the utility of shock index in an emergency department population of children Utility as an early predictor of patient deterioration when measured • Pre-hospital • At triage • Sequentially
  • 16. (Modified) Objective To evaluate shock index as a predictor for admission in an emergency department population of children SI evaluated independent of HR and SBP
  • 17. Methods: Data Sources Healthy Population  National Health and Nutrition Examination Survey (NHANES)  1999-2006 Emergency Department Population  National Hospital Ambulatory Medical Care Survey (NHAMCS ED)  2004-2006
  • 19. Methods: Data sources NHANES population Generate norms NHAMCS ED Population Address study question No BP in < 8 yr Age limited to 8-21 yr
  • 21.
  • 22. SI Norms Study: Data Sources Pediatric Age specific normal values  Calculate age- and gender-specific percentiles  Test of fit of logarithmic trend lines All-ages population age- and gender median values  Calculate percentiles by age, gender, and pregnancy status
  • 23. SI Norms Study: Results NHANES 10,195 patients age 8-17 (41,048,417 weighted) NHANES 32,819 age 8-85 (251,845,769 weighted)
  • 24. Results: SI Percentiles in the NHANES Population [n =13,308 (57.2 million, weighted)] 0.5 0.6 0.7 0.8 0.9 1 1.1 8 9 10 11 12 13 14 15 16 17 Age (y) ShockIndex 25 %ile 50 %ile 95 %ile 75 %ile
  • 25. Figure 3: Shock Index Median Value by Gender and Pregnancy Status, NHANES 1999-2006 Weighted Data, With Moving Average Trendlines (3-Period) .45 .50 .55 .60 .65 .70 .75 .80 .85 .90 8 12 16 20 24 28 32 36 40 44 48 52 56 60 64 68 72 76 80 84 Age (y) ShockIndex Male Non-pregnant female Pregnant 3 per. Mov. Avg. (Non- pregnant female) 3 per. Mov. Avg. (Male) 3 per. Mov. Avg. (Pregnant)
  • 26. SI Norms Study: Conclusions First report of pediatric age-specific normal values for SI First report of age and gender SI medians in an all-ages population Gender, pregnancy and age contribute to SI Smooth percentile trends for SI are best expressed as a logarithmic function
  • 28.
  • 29. Search for outcome measures Candidate measures of “shock” Unweighted n, NHAMCS 1999-2006 Traumatic shock (958.4) 0 Non-trauma shock (785.5) 1 Anaphylactic shock (995.0, 995.6) 5 ICU admit 13 Died 9 CPR 6 Admit 848
  • 30. Methods: Data sources NHANES population Generate norms NHAMCS ED Population Address study question Age limited to 8-21 yr Outcome: admission
  • 31. Methods: Analysis Logistic regression was used to model the association between predictor variables and admission Primary predictor •SI > 95th % •SI > 0.9
  • 32. Methods: Analysis Cut-point for percentiles Based on frequency distribution in the emergency department population • 95th % for SI and HR • 25th % for SBP Absolute cut-point of SI > 0.9 was based on adult literature
  • 33. Methods: Logistic Regression Model #1 #2 Outcome Admission Admission 1º independent variable SI > 95th % SI > 0.9
  • 34. Methods: Logistic Regression Model #1 #2 Outcome Admission Admission 1º independent variable SI > 95th % SI > 0.9 Other independent variables HR > 95th % SBP < 25th % Age, Gender, Race, Ethnicity, Payer
  • 35. Results: ED population NHAMCS ED Population 18,147 ED visits = 58.9 million visits, weighted Patients age 8-21 years 4 % were admitted
  • 36. Variable Cut-Point Proportion SI > 95th % 14% SI > 0.9 19% HR > 95th % 29% SBP < 25th % 6% SI > 95th % with normal HR, SBP < 1% Results: ED population
  • 37. Results: Bivariate In bivariate chi-square analyses, SI was associated with admission (p < 0.0001) SI > 95th % SI > 0.9
  • 38. Results: Bivariate Analyses Percent Admitted by SI Cutoff 0% 2% 4% 6% 8% 10% SI > 95th % SI < 95th % SI > 0.9 SI < 0.9 PercentAdmitted
  • 39. Results: Bivariate Analyses Percent Admitted by SI Cutoff 0% 2% 4% 6% 8% 10% SI > 95th % SI < 95th % SI > 0.9 SI < 0.9 PercentAdmitted OR = 2.97 p < .0001 OR = 2.63 p < .0001
  • 40. Model 1: Shock Index > 95th % for Age and Gender: Outcome = Admission OR 95% CI SI > 95th % 1.54 1.14 2.08 HR > 95th % 2.51 1.96 3.21 SBP < 25th % 1.24 0.87 1.77 Age, gender, race, ethnicity, and payer were not significant Results: Multivariate Analysis
  • 41. Model 2: Shock Index > 0.9: Outcome = Admission OR 95% CI Shock Index > 0.9 1.50 1.15 1.94 HR > 95th % 2.50 2.00 3.12 SBP < 25th % 1.27 0.90 1.79 Age 1.04 1.01 1.07 Results: Multivariate Analysis Gender, race, ethnicity, and payer were not significant
  • 42. Limitations No children under 8 years evaluated Insufficient numbers  Abnormal SI with normal HR and SBP  “Shock” as outcome Admission based on provider and patient No ability to assess unscheduled return visits
  • 43. Conclusions Shock index predicted hospital admission, independent of the impact of HR and SBP Expressed as percentile or absolute value

Editor's Notes

  1. Shock index is defined as (HR) / Systolic Blood pressure (SBP) It has been proposed as a a triage tool for both emergency department and disaster settings In fact, the Colorado department of public health uses shock index as part of a destination triage criteria for an emergency flu pandemic disaster plan for adults. It has also been used a monitoring tool for therapeutic efficacy in the adult population There are no established pediatric normal values.
  2. In the adult population, an elevated shock index is defined as &amp;gt; 0.9. It has been associated with blood loss, admissions, intensive care interventions, and ultimately poor outcome. Additionally, both experimental and clinical studies have shown that shock index has an inverse linear relationship with left ventricular function during acute circulatory failure. In other words as the shock index goes up, the left ventricular function deteriorates. There is only one pediatric study of shock index. It examined ill children who were transported to a tertiary care hospital. In this study, there was a positive association with mortality and, a reduction in shock index was associated with improved outcome.
  3. The objective of our study was to evaluate shock index as a predictor for admission in an emergency department population of children Si was evaluated independent of HR and SBP
  4. The objective of our study was to evaluate shock index as a predictor for admission in an emergency department population of children Si was evaluated independent of HR and SBP
  5. Two data sources were analyzed in our study. A healthy population dataset; The National Health and Nutrition Examination Survey (NHANES) was studied from 1999-2006 An emergency department dataset; The National Hospital Ambulatory Medical Care Survey (NHAMCS ED) dataset was studied from 2004-2006..
  6. Again since there are no known normal values for the pediatric cohort, we tabulated norms off the “normal healthy population”, otherwise known as NHANES. This data will be presented tomorrow in the poster session. After deriving the age and gender specific percentiles for SI, HR, and SBP, we applied these predictors to the ED population which was used to address the study question. The NHANES or normal population study did not measure blood pressure in children less than 8 years old, therefore our study of the ED population was limited to patients age 8-21 years.
  7. Again since there are no known normal values for the pediatric cohort, we tabulated norms off the “normal healthy population”, otherwise known as NHANES. This data will be presented tomorrow in the poster session. After deriving the age and gender specific percentiles for SI, HR, and SBP, we applied these predictors to the ED population which was used to address the study question. The NHANES or normal population study did not measure blood pressure in children less than 8 years old, therefore our study of the ED population was limited to patients age 8-21 years.
  8. Again since there are no known normal values for the pediatric cohort, we tabulated norms off the “normal healthy population”, otherwise known as NHANES. This data will be presented tomorrow in the poster session. After deriving the age and gender specific percentiles for SI, HR, and SBP, we applied these predictors to the ED population which was used to address the study question. The NHANES or normal population study did not measure blood pressure in children less than 8 years old, therefore our study of the ED population was limited to patients age 8-21 years.
  9. The majority of the healthy population or normative data will be presented tomorrow. This shows the shock index percentiles by age. The sample size is &amp;gt; 13, 000, this represents 57.2 million patients with weighted data. The white horizontal line indicates a SI of 0.9.
  10. Again since there are no known normal values for the pediatric cohort, we tabulated norms off the “normal healthy population”, otherwise known as NHANES. After deriving the age and gender specific percentiles for SI, HR, and SBP, we applied these predictors to the ED population which was used to address the study question. The NHANES or normal population study did not measure blood pressure in children less than 8 years old, therefore our study of the ED population was limited to patients age 8-21 years.
  11. Ideally, we would have used “shock” as our outcome measure. However, in the NHAMCS ED dataset, which includes 7 years of nationally representative data, there were too few patients with the shock-related indicators we considered. So, we decided to use “admission” as our outcome, as it was the most common outcome measure that was indicative of higher acuity illness in the dataset.
  12. There were insufficient data to evaluate shock or a surrogate shock marker as an outcome in the ED population. Thus, we chose “admission” as our outcome variable.
  13. Logistic regression was used to model the association between predictor variables and the outcome, admission There were two approaches for the primary predictor variable: SI &amp;gt; 95th SI &amp;gt; .9 Admission, as the outcome, was chosen. There were insufficient data to evaluate shock or a surrogate shock marker as an outcome in this dataset.
  14. Cut-point selection for percentiles was based on frequency distribution in the ED pediatric population. The 95th percentile for SI and HR were used. The 25th percentile for SBP was used. The absolute cut-point of 0.9 was based on adult literature. Younger children will have SI &amp;gt; 0.9, however this dataset only had the ability to evaluate patients greater than 8 years.
  15. Our methods for the logistic regression used two models which were identical except that model 1 used SI &amp;gt;95% for age and gender and model 2 used a cut-point set at 0.9.
  16. Other independent variables were HR &amp;gt; 95 % for age and gender, SBP &amp;lt; 25th % for age and gender, Age, Gender Race Ethnicity and Payor type colinearity between variables was assessed
  17. THE emergency department data or NHAMCS ED dataset had over 18,000 ED visits This represents 58.9 million patients with weighted data. The patients were ages 8-21 years. 4 % were admitted
  18. 14% had a SI &amp;gt; 95 percentile for age and gender 19% had a SI &amp;gt; 0.9 29% had a HR &amp;gt; 95 percentile 6% had a SBP &amp;lt; 25 percentile &amp;lt; 1% had SI &amp;gt; 95% in the context of normal HR (&amp;lt; 95%) and SBP (&amp;gt; 25%)
  19. In bivariate chi-square analyses, SI was associated with admission (p &amp;lt; 0.0001) This was true for both SI &amp;gt; 95th % and SI &amp;gt; 0.9
  20. In bivaraite analyses, both SI cutoffs were associated with Admission. The SI &amp;gt;95% is represented in yellow and SI &amp;gt; 0.9 is represented in oranage
  21. The unadjusted odds ratios are 2.97 for the SI cutoff of the 95th percentile, and 2.63 for the SI cutoff of 0.9. Both were significant.
  22. In model 1, we used logistic regression to analyze the association between our outcome, admission, and the shock index cutoff defined by the 95th percentile for age and gender. Our primary independent variable, SI greater than 95th percentile, was associated with the outcome, with an odds ratio of 1.54.
  23. In model 2, we used logistic regression to analyze the association between our outcome, admission, and the shock index cutoff of 0.9. Our primary independent variable, SI greater than 0.9, was associated with the outcome, with an odds ratio of 1.50.
  24. The limitations of our study were that: No children under 8 years were evaluated The sample had insufficient numbers either to analyze the population who had abnormal SI in the context of normal HR and sBP, or to use “shock” as an outcome. Admission is based on provider variability as well as patient severity No ability to assess unscheduled return visits