Restriction Enzymes



                                                 Kasia Fisher
                                                   Block 3
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What Are Restriction Enzymes?
• Enzymes that are produced by different kinds
  of bacteria that can cleave or cut DNA strands
  at a specific sequence of nucleotides


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Types of Restriction Enzymes
• Type I: Random cuts occur at locations that
  could be thousands of nucleotides apart
• Type III: Cuts are as long as around 25
  nucleotides
• Type II: This type is most used in Biology – cuts
  occur about every 4-6 nucleotides
Types of Cleaving
• Blunt End: Enzyme • Sticky End: Enzyme
  cuts straight through cuts closer to each
                        side of the
                        recognition sequence.




                    http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/R/RestrictionEnzymes.html
Discovery
• Werner Arber & Stuart Linn discovered
  Restriction Enzymes
• 1st Restriction Enzyme that was discovered
  was EcoB
  – This came from a strain of E. coli
  – Soon after this discovery, EcoK was discovered
    from E. coli as well
Recombinant DNA Process
• In this process, bacterial DNA is joined with a
  gene of interest

• This process is performed in order to study
  the DNA more thoroughly or for useful
  products like vaccines
Recombinant DNA Process Steps
1. DNA from the organism of interest is
   prepared to be able to be cloned
2. A virus is digested with and enzyme and
   compatible ends (with the DNA) are made
3. DNA in a plasmid form is cut
4. This DNA is joined with the virus’ compatible
   ends
5. The DNA strands are joined with DNA ligase
Recombinant DNA Process            http://www.google.com/i
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                              Here, the new
Compatible                    DNA is attached
virus ends are                with DNA ligase
joined
Still Confused?
• The beginning of this video shows how
  Restriction Enzymes work to create
  Recombinant DNA:

http://www.youtube.com/watch?v=YdjvUv-1vCI
Sources
• http://users.rcn.com/jkimball.ma.ultranet/Bio
  logyPages/R/RestrictionEnzymes.html
• http://biotech.about.com/od/proteinengineer
  ing/a/restrictenz.htm
• http://www.bookrags.com/research/restrictio
  n-enzymes-gen-04/

Restriction enzymes

  • 1.
    Restriction Enzymes Kasia Fisher Block 3 http://www.google.com/imgres?num=10&um=1 &hl=en&biw=1015&bih=738&tbm=isch&tbnid =rM0HwLq8CPQYRM:&imgrefurl=http://ww Mrs. Scherman http://www.google.com/imgres?start=34&num=10&u m=1&hl=en&biw=1015&bih=738&tbm=isch&tbnid =13XaF82AY5mieM:&imgrefurl=http://mol- w.simzymes.com/index.php%3Fmain_page%3 biol4masters.masters.grkraj.org/html/Genetic_Engine Dindex%26cPath%3D11000_11500&docid=us- ering1B-Molecular_Tools- welDov7Xk6M&imgurl=http://www.simzymes. Restriction_Enzymes.htm&docid=1w2C5_dAjGkvw com/images//categories/restrictionEnzymes.gif M&imgurl=http://mol- &w=320&h=240&ei=0pO9T9PhGc_16gHh2Ih biol4masters.masters.grkraj.org/html/Genetic_Engine Z&zoom=1&iact=rc&dur=309&sig=103128700 ering1B-Molecular_Tools- 879282556508&sqi=2&page=1&tbnh=120&tbn Restriction_Enzymes_files/image001.gif&w=346&h w=160&start=0&ndsp=15&ved=1t:429,r:11,s:0, =257&ei=upS9T53_JqaO6gGXpp1S&zoom=1&iact i:169&tx=110&ty=62 =rc&dur=334&sig=103128700879282556508&page =3&tbnh=158&tbnw=234&ndsp=17&ved=1t:429,r:3 ,s:34,i:54&tx=85&ty=121
  • 2.
    What Are RestrictionEnzymes? • Enzymes that are produced by different kinds of bacteria that can cleave or cut DNA strands at a specific sequence of nucleotides http://www.google.com/imgres?nu m=10&um=1&hl=en&biw=1015&bih =738&tbm=isch&tbnid=_oThF_Vt0n 85gM:&imgrefurl=http://www.web- books.com/MoBio/Free/Ch9A3.htm &docid=grGZk3ryZHYEpM&imgurl=h ttp://www.web- books.com/MoBio/Free/images/Ch9 At.gif&w=571&h=434&ei=0pO9T9Ph Gc_16gHh2IhZ&zoom=1&iact=hc&v px=90&vpy=357&dur=1241&hovh=1 96&hovw=258&tx=179&ty=109&sig =103128700879282556508&sqi=2& page=1&tbnh=120&tbnw=158&start =0&ndsp=15&ved=1t:429,r:10,s:0,i: 167
  • 3.
    Types of RestrictionEnzymes • Type I: Random cuts occur at locations that could be thousands of nucleotides apart • Type III: Cuts are as long as around 25 nucleotides • Type II: This type is most used in Biology – cuts occur about every 4-6 nucleotides
  • 4.
    Types of Cleaving •Blunt End: Enzyme • Sticky End: Enzyme cuts straight through cuts closer to each side of the recognition sequence. http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/R/RestrictionEnzymes.html
  • 5.
    Discovery • Werner Arber& Stuart Linn discovered Restriction Enzymes • 1st Restriction Enzyme that was discovered was EcoB – This came from a strain of E. coli – Soon after this discovery, EcoK was discovered from E. coli as well
  • 6.
    Recombinant DNA Process •In this process, bacterial DNA is joined with a gene of interest • This process is performed in order to study the DNA more thoroughly or for useful products like vaccines
  • 7.
    Recombinant DNA ProcessSteps 1. DNA from the organism of interest is prepared to be able to be cloned 2. A virus is digested with and enzyme and compatible ends (with the DNA) are made 3. DNA in a plasmid form is cut 4. This DNA is joined with the virus’ compatible ends 5. The DNA strands are joined with DNA ligase
  • 8.
    Recombinant DNA Process http://www.google.com/i mgres?num=10&um=1&h l=en&biw=1015&bih=73 8&tbm=isch&tbnid=ht1Y nB2I- Plasmid is cut here 9Q5HM:&imgrefurl=http: //en.wikipedia.org/wiki/Re combinant_DNA&docid= KUT- 5jVGGyn4zM&imgurl=ht tp://upload.wikimedia.org/ wikipedia/en/thumb/0/01/ Recombinant_formation_ of_plasmids.svg/280px- Recombinant_formation_ of_plasmids.svg.png&w= 280&h=227&ei=xJe9T6D oELON6QHcvZhe&zoom =1&iact=hc&vpx=127&v py=201&dur=204&hovh= 181&hovw=224&tx=114 &ty=110&sig=103128700 879282556508&sqi=2&p age=1&tbnh=153&tbnw= 189&start=0&ndsp=15&v ed=1t:429,r:0,s:0,i:100 Here, the new Compatible DNA is attached virus ends are with DNA ligase joined
  • 9.
    Still Confused? • Thebeginning of this video shows how Restriction Enzymes work to create Recombinant DNA: http://www.youtube.com/watch?v=YdjvUv-1vCI
  • 10.
    Sources • http://users.rcn.com/jkimball.ma.ultranet/Bio logyPages/R/RestrictionEnzymes.html • http://biotech.about.com/od/proteinengineer ing/a/restrictenz.htm • http://www.bookrags.com/research/restrictio n-enzymes-gen-04/