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“REGULATION OF
GENE EXPRESSION”
Presentation of
Molecular Biology
Presented by:- Yashika Saini
Course:- M.Sc. Microbiology (Hons.)
School of Basic Sciences & Research
Sharda University, Greater Noida, UP, India
Ways to Regulate Protein Concentration in a
Cell
• Synthesis of primary RNA transcript
• Process this RNA into mRNA
• Post-transcriptional modifications of mRNA
• Degradation of mRNA
• Protein synthesis
• Post-translational modification of protein
• Targeting and transport of the protein
• Degradation of the protein
Regulation of gene expression basically means the regulation of
protein that is formed after translation.
Seven Processes that affect the Steady-State
Concentration of a Protein
The Vocabulary of Gene Regulation
• Housekeeping gene
• under constitutive expression
• constantly expressed in approximately all cells
• Regulated gene
• Levels of the gene product rise and fall with the needs of
the organism.
• Such genes are inducible.
• able to be turned on
• Such genes are also repressible.
• able to be turned off
Negative Regulation
• Negative regulation involves repressors.
• Example: Repressor binds to DNA and shuts down
transcription
• Alternative: Signal causes repressor to dissociate from
DNA; transcription induced
Despite opposite effects
on transcription, both
are negative regulation
Positive Regulation
• Positive regulation involves activators.
• Enhance activity of RNA polymerase
• Activator-binding sites
are near promoters that
weakly bind RNA Pol or
do not bind at all.
• It may remain bound
until a molecule signals
dissociation.
• Alternatively, the
activator may only bind
when signaled.
RNA Polymerase Binding to Promoters Is a
Major Target of Regulation
• RNA polymerases bind to promoter sequences near
the starting point of transcription initiation.
• The RNA pol-promoter interaction greatly influences
the rate of transcription initiation.
• Regulatory proteins (transcription factors) work to
enhance or inhibit this interaction between RNA pol
and the promoter DNA.
Operon in gene regulation of Prokayotes
• An operon is a cluster of genes sharing a promoter
and regulatory sequences.
• Genes are transcribed together, so mRNAs are several genes
represented on one mRNA (polycistronic).
• Example: the lac operon
The lac Operon Reveals Many Principles of
Gene Regulation
• Work of Jacob and Monod − 1960
• Shows how three genes for metabolism of lactose are
regulated together as an operon:
• -galactosidase (lacZ)
• cleaves lactose to yield glucose and galactose
• lactose permease (galactoside permease; lacY)
• transports lactose into cell
• thiogalactoside transacetylase (lacA)
• That rely on negative regulation via a repressor.
Lactose Metabolism in E. Coli
• When glucose is abundant &
lactose is lacking, cells make
only very low levels of
enzymes for lactose metabolism.
- Transcription is repressed.
• If glucose is scarce and cells
are fed lactose, the cells can use
it as their energy source.
• The cells suddenly express the
genes for the enzymes for
lactose metabolism.
- Transcription is no longer repressed.
Structure of the lac Operon
Inhibiting the Transcription of the lac Operon
via a Repressor Protein
• A gene called lacI encodes a repressor called the Lac repressor.
• It has its own promoter PI.
• Transcription of the repressor is independent of transcription of the
enzymes the repressor regulates.
• The repressor can bind to three operator sites (O1–O3).
• The Lac repressor binds primarily to the operator O1.
• O1 is adjacent to the promoter.
• Binding of the repressor helps prevent RNA polymerase from binding to
the promoter.
• The repressor also binds to one of two secondary operators,
with the DNA looped between this secondary operator and O1.
It reduces transcription, but transcription occurs at a low, basal rate, even
with the repressor bound.
Lac Repressor Bound to O1 and O3 with
DNA Looped Between
The lac Operon Is Induced by
Allolactose
• Allolactose (an inducer) binds to the repressor and
causes it to dissociate from the operator.
• -galactosidase not only hydrolyzes lactose, but it can also
isomerize lactose into allolactose.
– [Allolactose]  when
[Lactose] 
The lac Operon Is Governed by More
Than Repressor Binding
• The availability of glucose governs expression of
lactose-digesting genes via catabolite repression.
• When glucose is present, lactose genes are turned off.
• It is mediated by cAMP and cAMP receptor protein (CRP or
CAP for catabolite activator protein).
When Glucose Is Absent, lac Operon
Transcription Is Stimulated by CRP-cAMP
• cAMP binds near the
promoter.
• stimulates transcription 50-fold
• bends DNA
• open complex doesn’t form
readily without CRP-cAMP
• CRP-cAMP only has this effect
when the Lac repressor has
dissociated.
• cAMP is made when [glucose]
is low.
When Lactose Is Absent
Little to No Transcription Occurs
Whether glucose is high or low, if lactose is absent
repressor stays bound
no transcription even when CRP-cAMP bind.
When Lactose Is Present, Transcription Depends On
Glucose Level
• Repressor dissociates, but transcription is only
stimulated significantly if cAMP rises.
Combined Effects of Glucose and
Lactose on the lac Operon
• When lactose is low, repressor is bound:
inhibition
• When lactose is high, repressor dissociates
permitting transcription
• When glucose is high, CRP is not bound and
transcription is dampened
• When glucose is low, cAMP is high and CRP is bound
activation
Two Requirements for Strongest Induction of
the lac Operon
1. Lactose must be present to form allolactose to
bind to the repressor and cause it to dissociate
from the operator.
- reducing repression
2. Glucose must be low so that cAMP can increase,
bind to CRP, and the complex can bind near the
promoter
- causing activation
Thank you

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Regulation of Gene Expression

  • 1. “REGULATION OF GENE EXPRESSION” Presentation of Molecular Biology Presented by:- Yashika Saini Course:- M.Sc. Microbiology (Hons.) School of Basic Sciences & Research Sharda University, Greater Noida, UP, India
  • 2. Ways to Regulate Protein Concentration in a Cell • Synthesis of primary RNA transcript • Process this RNA into mRNA • Post-transcriptional modifications of mRNA • Degradation of mRNA • Protein synthesis • Post-translational modification of protein • Targeting and transport of the protein • Degradation of the protein Regulation of gene expression basically means the regulation of protein that is formed after translation.
  • 3. Seven Processes that affect the Steady-State Concentration of a Protein
  • 4. The Vocabulary of Gene Regulation • Housekeeping gene • under constitutive expression • constantly expressed in approximately all cells • Regulated gene • Levels of the gene product rise and fall with the needs of the organism. • Such genes are inducible. • able to be turned on • Such genes are also repressible. • able to be turned off
  • 5. Negative Regulation • Negative regulation involves repressors. • Example: Repressor binds to DNA and shuts down transcription • Alternative: Signal causes repressor to dissociate from DNA; transcription induced Despite opposite effects on transcription, both are negative regulation
  • 6. Positive Regulation • Positive regulation involves activators. • Enhance activity of RNA polymerase • Activator-binding sites are near promoters that weakly bind RNA Pol or do not bind at all. • It may remain bound until a molecule signals dissociation. • Alternatively, the activator may only bind when signaled.
  • 7. RNA Polymerase Binding to Promoters Is a Major Target of Regulation • RNA polymerases bind to promoter sequences near the starting point of transcription initiation. • The RNA pol-promoter interaction greatly influences the rate of transcription initiation. • Regulatory proteins (transcription factors) work to enhance or inhibit this interaction between RNA pol and the promoter DNA.
  • 8. Operon in gene regulation of Prokayotes • An operon is a cluster of genes sharing a promoter and regulatory sequences. • Genes are transcribed together, so mRNAs are several genes represented on one mRNA (polycistronic). • Example: the lac operon
  • 9. The lac Operon Reveals Many Principles of Gene Regulation • Work of Jacob and Monod − 1960 • Shows how three genes for metabolism of lactose are regulated together as an operon: • -galactosidase (lacZ) • cleaves lactose to yield glucose and galactose • lactose permease (galactoside permease; lacY) • transports lactose into cell • thiogalactoside transacetylase (lacA) • That rely on negative regulation via a repressor.
  • 10. Lactose Metabolism in E. Coli • When glucose is abundant & lactose is lacking, cells make only very low levels of enzymes for lactose metabolism. - Transcription is repressed. • If glucose is scarce and cells are fed lactose, the cells can use it as their energy source. • The cells suddenly express the genes for the enzymes for lactose metabolism. - Transcription is no longer repressed.
  • 11. Structure of the lac Operon
  • 12. Inhibiting the Transcription of the lac Operon via a Repressor Protein • A gene called lacI encodes a repressor called the Lac repressor. • It has its own promoter PI. • Transcription of the repressor is independent of transcription of the enzymes the repressor regulates. • The repressor can bind to three operator sites (O1–O3). • The Lac repressor binds primarily to the operator O1. • O1 is adjacent to the promoter. • Binding of the repressor helps prevent RNA polymerase from binding to the promoter. • The repressor also binds to one of two secondary operators, with the DNA looped between this secondary operator and O1. It reduces transcription, but transcription occurs at a low, basal rate, even with the repressor bound.
  • 13. Lac Repressor Bound to O1 and O3 with DNA Looped Between
  • 14. The lac Operon Is Induced by Allolactose • Allolactose (an inducer) binds to the repressor and causes it to dissociate from the operator. • -galactosidase not only hydrolyzes lactose, but it can also isomerize lactose into allolactose. – [Allolactose]  when [Lactose] 
  • 15. The lac Operon Is Governed by More Than Repressor Binding • The availability of glucose governs expression of lactose-digesting genes via catabolite repression. • When glucose is present, lactose genes are turned off. • It is mediated by cAMP and cAMP receptor protein (CRP or CAP for catabolite activator protein).
  • 16. When Glucose Is Absent, lac Operon Transcription Is Stimulated by CRP-cAMP • cAMP binds near the promoter. • stimulates transcription 50-fold • bends DNA • open complex doesn’t form readily without CRP-cAMP • CRP-cAMP only has this effect when the Lac repressor has dissociated. • cAMP is made when [glucose] is low.
  • 17. When Lactose Is Absent Little to No Transcription Occurs Whether glucose is high or low, if lactose is absent repressor stays bound no transcription even when CRP-cAMP bind.
  • 18. When Lactose Is Present, Transcription Depends On Glucose Level • Repressor dissociates, but transcription is only stimulated significantly if cAMP rises.
  • 19. Combined Effects of Glucose and Lactose on the lac Operon • When lactose is low, repressor is bound: inhibition • When lactose is high, repressor dissociates permitting transcription • When glucose is high, CRP is not bound and transcription is dampened • When glucose is low, cAMP is high and CRP is bound activation
  • 20. Two Requirements for Strongest Induction of the lac Operon 1. Lactose must be present to form allolactose to bind to the repressor and cause it to dissociate from the operator. - reducing repression 2. Glucose must be low so that cAMP can increase, bind to CRP, and the complex can bind near the promoter - causing activation

Editor's Notes

  1. FIGURE 28–1 Seven processes that affect the steady-state concentration of a protein. Each process has several potential points of regulation.
  2. FIGURE 28–4a,b Common patterns of regulation of transcription initiation. (a) Repressor binds to the operator in the absence of the molecular signal; the external signal causes dissociation of the repressor to permit transcription. (b) Repressor binds in the presence of the signal; the repressor dissociates and transcription ensues when the signal is removed. Positive regulation is mediated by gene activators. Again, two types are shown.
  3. FIGURE 28–4c,d Common patterns of regulation of transcription initiation. Two types of negative regulation are illustrated. (c) Activator binds in the absence of the molecular signal and transcription proceeds; when the signal is added, the activator dissociates and transcription is inhibited. (d) Activator binds in the presence of the signal; it dissociates only when the signal is removed. Note that “positive” and “negative” regulation refer to the type of regulatory protein involved: the bound protein either facilitates or inhibits transcription. In either case, addition of the molecular signal may increase or decrease transcription, depending on its effect on the regulatory protein.
  4. FIGURE 28–6 Representative bacterial operon. Genes A, B, and C are transcribed on one polycistronic mRNA. Typical regulatory sequences include binding sites for proteins that either activate or repress transcription from the promoter.
  5. FIGURE 28–8a The lac operon. (a) The lac operon. The lacI gene encodes the Lac repressor. The lac Z, Y, and A genes encode β-galactosidase, galactoside permease, and thiogalactoside transacetylase, respectively. P is the promoter for the lac genes, and PI is the promoter for the I gene. O1 is the main operator for the lac operon; O2 and O3 are secondary operator sites of lesser affinity for the Lac repressor. The inverted repeat to which the Lac repressor binds in O1 is shown in the inset.
  6. FIGURE 28–8b The lac operon. (b) The Lac repressor binds to the main operator and O2 or O3, apparently forming a loop in the DNA.
  7. FIGURE 28–17 CRP homodimer with bound cAMP. (PDB ID 1RUN) Note the bending of the DNA around the protein. The region that interacts with RNA polymerase is indicated.
  8. FIGURE 28–18a,b Positive regulation of the lac operon by CRP. The binding site for CRP-cAMP is near the promoter. The combined effects of glucose and lactose availability on lac operon expression are shown. When lactose is absent, the repressor binds to the operator and prevents transcription of the lac genes. It does not matter whether glucose is (a) present or (b) absent.
  9. FIGURE 28–18c,d Positive regulation of the lac operon by CRP. The binding site for CRP-cAMP is near the promoter. The combined effects of glucose and lactose availability on lac operon expression are shown. When lactose is absent, the repressor binds to the operator and prevents transcription of the lac genes. (c) If lactose is present, the repressor dissociates from the operator. However, if glucose is also available, low cAMP levels prevent CRP-cAMP formation and DNA binding. RNA polymerase may occasionally bind and initiate transcription, resulting in a very low level of lac gene transcription. (d) When lactose is present and glucose levels are low, cAMP levels rise. The CRP-cAMP complex forms and facilitates robust binding of RNA polymerase to the lac promoter and high levels of transcription.