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1
NUCLEOTIDE METABOLISM
AREEBAGHAYAS
2
3
Biochemical pathway where new nucleotides are
synthesized from simple precursor molecules.
The synthesis of nucleotide by recycling the pre-existing
free bases or nucleosides released from nucleic acid
breakdown.
4
5
6
Tetrahydrofolate
THF
THF
THF
NITROGEN
7
8
Formation of PRPP
Addition of N9(Glutamine)
PRPP synthetase
Glutamine PRPP
amidotransferase
9
Addition of C8 (THF)
Addition of C4,C5 and N7
(Glycine)
10
Addition of N3 (Glutamine)
Cyclisation (closure of ring) FGAM Cyclase
11
Addition of C6 (Bicarbonate)
Addition of N1 (Aspartate )
12
Addition of C2 (THF)
Removal of Fumarate
13
Cyclisation (closure of ring)
14
15
REGULATION OF
PURINE SYNTHESIS
IMP dehydrogenase
Adenylosuccinate
synthetase
• In purine salvage pathway free purine bases or nucleosides are converted to
nucleotides.
• No new nucleotides are synthesized from precursor.
• This pathway allows many tissues with low activity of De-Novo pathway of purine
synthesis to meet their nucleotide requirement, e.g. BRAIN, RBCs & NEUTROPHILS.
• HGPRTase is the “salvage enzyme” for purines.
 ADVANTAGE OF SALVAGE PATHWAY-
o This pathway requires much less energy and metabolic intermediates than the De-Novo
synthesis. 17
Adenine
Adenosine Monophosphate
PRPP PPi
This takes place in following two ways:-
1. CONVERSION OF FREE PURINES INTO NUCLEOTIDES -
18
PPi
PRPP PPi
PRPP
Hypoxanthine
Guanine
Inosine Monophosphate
Guanosine Monophosphate19
Adenosine MonophosphateAdenosine
ATP ADP
2. CONVERSION OF NUCLEOSIDES INTO NUCLEOTIDES -
2’d CMP2’d Cytidine
ATP ADP2’d Guanosine
or
or
or
or
2’d Adenosine 2’d AMP
2’d GMP
End product of Purines (A&G) is URIC ACID.
• Degradation of purine nucleotides occurs by the action of Nucleotidase which yields
nucleosides (Adenosine & Guanosine).
• Adenosine is first converted to inosine by Adenosine deaminase.
• Inosine & Guanosine are respectively, converted to hypoxanthine & guanine (purine
bases) by Nucleoside Phosphorylase.
• Guanine undergoes deamination by Guanase to form Xanthine.
•Xanthine oxidase is an important enzyme that converts Hypoxanthine to Xanthine, &
Xanthine to Uric acid.
21
CATABOLISM OF PURINE NUCLEOTIDES
22
23
End product of purine metabolism is URIC ACID.
The normal concentration of serum uric acid is 4-7 mg / dl.
An elevated serum uric acid concentration is known as
HYPERURICEMIA.
 Excess formation & deposition of Uric acid & Sodium Urate
crystals in soft tissues and joints leads to GOUT.
DISORDERS OF PURINE METABOLISM
Classification of Gout-
25
GOUT
Gout is a disease of joints caused by an elevated concentration of uric acid in
blood & tissues.
Increased serum uric acid is due to increased formation of uric acid or
decreased renal excretion.
1. Primary gout
2. Secondary gout
26
Primary gout
Primary gout is an inborn error of metabolism due to overproduction of uric acid.
Increased level of uric acid lead to increased synthesis of purine nucleotides.
Causes defect in following enzymes of purine nucleotide biosynthesis :-
1. PRPP synthetase
2. Glutamine PRPP amidotransferase
3. HGPRTase
27
28
Joints become inflamed, painful
& arthritic due to deposition of
sodium urate crystals (TOPHI)
Deposition of urate crystals in
kidney tubules & leads to
renal failure.
Symptoms of Primary Gout
29
Secondary Gout
Secondary gout causes elevated destruction of cells or decreased elimination of
uric acid.
 Increased degradation of nucleic acid to uric acid occurs in Cancer, prolonged
starvation, alcohol etc.
 Decreased elimination occurs in chronic renal diseases.
 Glucose-6-phosphatase deficiency.
30
31
32
LESCH-NYHAN SYMDROME
• Rare x-linked recessive disorder.
• Inborn error of purine metabolism.
• Deficiency of enzyme- HGPRTase
FEATURES-
1. Hyperuricemia
2. Gout
3. Urinary tract stones
4. Mental retardation
5. Spasticity
6. Self mutilation – biting of fingers and lips.
33
34
35
Biosynthesis of Pyrimidine is simple than that of Purine.
The six-membered pyrimidine ring is made first (Orotate) and then attached to Ribose 5-P
which is donated by PRPP.
 Sources of CARBON & NITROGEN atoms
 N1,C6,C5 and C4 from Aspartate
 N3 from Glutamine
 C2 from Carbon dioxide
2
 This process require carbamoyl phosphate, which is also an intermediate in
the urea cycle.
36
37
Formation of carbomyl
phosphate
Condensation
38
Ring closure
Dehydrogenation
39
Transfer of ribose
phosphate
Decarboxylation
40
44
45
The end products of Pyrimidine nucleotides are highly water soluble.
These are-
1. CO2
2. NH3
3. β-alanine
4. β-aminoisobutyrate
CATABOLISM OF PYRIMIDINE NUCLEOTIDES
46
TCA Cycle
Precursor of
Acetyl CoA
Succinyl CoA
TCA CycleExcreted in URINE
(marker of pyrimidine
degradation)
47
It is an hereditary disease.
Results from absence of either one or both the enzymes;
 Orotatephosphoribosyltransferase (OPRTase)
 Orotidylate decarboxylase.
It is of 2 types:
1. Type I orotic aciduria:
• Due to deficiency of both orotate phosphoribosyltransferase (OPRTase) and
Orotidylate decarboxylase.
2. Type II orotic aciduria:
• Deficiency of Orotidylate decarboxylase.
OROTIC ACIDURIA
48
Features:
■ Poor growth
■ Megaloblastic anaemia
■ Does not improve with vitamin B12 of folic acid
■ Excretion of large amount of orotate in urine
Treatment:
■ Can be successfully treated by feeding uridine.
49
REYE’S SYNDROME:
• This is considered as a secondary orotic aciduria.
• Defect in ornithine trascarbamoylase leads to inability of severely
damages mitochondria to utilize carbamoyl phosphate in the
formation of urea.
• This is then diverted for cytosolic overproduction and excretion of
orotic acid.
50
THANK YOU
51

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Nucleotide metabolism (purine and pyrimidine synthesis)

  • 2. 2
  • 3. 3 Biochemical pathway where new nucleotides are synthesized from simple precursor molecules. The synthesis of nucleotide by recycling the pre-existing free bases or nucleosides released from nucleic acid breakdown.
  • 4. 4
  • 5. 5
  • 7. 7
  • 8. 8 Formation of PRPP Addition of N9(Glutamine) PRPP synthetase Glutamine PRPP amidotransferase
  • 9. 9 Addition of C8 (THF) Addition of C4,C5 and N7 (Glycine)
  • 10. 10 Addition of N3 (Glutamine) Cyclisation (closure of ring) FGAM Cyclase
  • 11. 11 Addition of C6 (Bicarbonate) Addition of N1 (Aspartate )
  • 12. 12 Addition of C2 (THF) Removal of Fumarate
  • 14. 14
  • 15. 15 REGULATION OF PURINE SYNTHESIS IMP dehydrogenase Adenylosuccinate synthetase
  • 16. • In purine salvage pathway free purine bases or nucleosides are converted to nucleotides. • No new nucleotides are synthesized from precursor. • This pathway allows many tissues with low activity of De-Novo pathway of purine synthesis to meet their nucleotide requirement, e.g. BRAIN, RBCs & NEUTROPHILS. • HGPRTase is the “salvage enzyme” for purines.  ADVANTAGE OF SALVAGE PATHWAY- o This pathway requires much less energy and metabolic intermediates than the De-Novo synthesis. 17
  • 17. Adenine Adenosine Monophosphate PRPP PPi This takes place in following two ways:- 1. CONVERSION OF FREE PURINES INTO NUCLEOTIDES - 18
  • 19. Adenosine MonophosphateAdenosine ATP ADP 2. CONVERSION OF NUCLEOSIDES INTO NUCLEOTIDES - 2’d CMP2’d Cytidine ATP ADP2’d Guanosine or or or or 2’d Adenosine 2’d AMP 2’d GMP
  • 20. End product of Purines (A&G) is URIC ACID. • Degradation of purine nucleotides occurs by the action of Nucleotidase which yields nucleosides (Adenosine & Guanosine). • Adenosine is first converted to inosine by Adenosine deaminase. • Inosine & Guanosine are respectively, converted to hypoxanthine & guanine (purine bases) by Nucleoside Phosphorylase. • Guanine undergoes deamination by Guanase to form Xanthine. •Xanthine oxidase is an important enzyme that converts Hypoxanthine to Xanthine, & Xanthine to Uric acid. 21 CATABOLISM OF PURINE NUCLEOTIDES
  • 21. 22
  • 22. 23
  • 23. End product of purine metabolism is URIC ACID. The normal concentration of serum uric acid is 4-7 mg / dl. An elevated serum uric acid concentration is known as HYPERURICEMIA.  Excess formation & deposition of Uric acid & Sodium Urate crystals in soft tissues and joints leads to GOUT. DISORDERS OF PURINE METABOLISM
  • 24. Classification of Gout- 25 GOUT Gout is a disease of joints caused by an elevated concentration of uric acid in blood & tissues. Increased serum uric acid is due to increased formation of uric acid or decreased renal excretion. 1. Primary gout 2. Secondary gout
  • 25. 26 Primary gout Primary gout is an inborn error of metabolism due to overproduction of uric acid. Increased level of uric acid lead to increased synthesis of purine nucleotides. Causes defect in following enzymes of purine nucleotide biosynthesis :- 1. PRPP synthetase 2. Glutamine PRPP amidotransferase 3. HGPRTase
  • 26. 27
  • 27. 28 Joints become inflamed, painful & arthritic due to deposition of sodium urate crystals (TOPHI) Deposition of urate crystals in kidney tubules & leads to renal failure. Symptoms of Primary Gout
  • 28. 29 Secondary Gout Secondary gout causes elevated destruction of cells or decreased elimination of uric acid.  Increased degradation of nucleic acid to uric acid occurs in Cancer, prolonged starvation, alcohol etc.  Decreased elimination occurs in chronic renal diseases.  Glucose-6-phosphatase deficiency.
  • 29. 30
  • 30. 31
  • 31. 32 LESCH-NYHAN SYMDROME • Rare x-linked recessive disorder. • Inborn error of purine metabolism. • Deficiency of enzyme- HGPRTase FEATURES- 1. Hyperuricemia 2. Gout 3. Urinary tract stones 4. Mental retardation 5. Spasticity 6. Self mutilation – biting of fingers and lips.
  • 32. 33
  • 33. 34
  • 34. 35 Biosynthesis of Pyrimidine is simple than that of Purine. The six-membered pyrimidine ring is made first (Orotate) and then attached to Ribose 5-P which is donated by PRPP.  Sources of CARBON & NITROGEN atoms  N1,C6,C5 and C4 from Aspartate  N3 from Glutamine  C2 from Carbon dioxide 2
  • 35.  This process require carbamoyl phosphate, which is also an intermediate in the urea cycle. 36
  • 39. 40
  • 40. 44
  • 41. 45 The end products of Pyrimidine nucleotides are highly water soluble. These are- 1. CO2 2. NH3 3. β-alanine 4. β-aminoisobutyrate CATABOLISM OF PYRIMIDINE NUCLEOTIDES
  • 42. 46 TCA Cycle Precursor of Acetyl CoA Succinyl CoA TCA CycleExcreted in URINE (marker of pyrimidine degradation)
  • 43. 47
  • 44. It is an hereditary disease. Results from absence of either one or both the enzymes;  Orotatephosphoribosyltransferase (OPRTase)  Orotidylate decarboxylase. It is of 2 types: 1. Type I orotic aciduria: • Due to deficiency of both orotate phosphoribosyltransferase (OPRTase) and Orotidylate decarboxylase. 2. Type II orotic aciduria: • Deficiency of Orotidylate decarboxylase. OROTIC ACIDURIA 48
  • 45. Features: ■ Poor growth ■ Megaloblastic anaemia ■ Does not improve with vitamin B12 of folic acid ■ Excretion of large amount of orotate in urine Treatment: ■ Can be successfully treated by feeding uridine. 49
  • 46. REYE’S SYNDROME: • This is considered as a secondary orotic aciduria. • Defect in ornithine trascarbamoylase leads to inability of severely damages mitochondria to utilize carbamoyl phosphate in the formation of urea. • This is then diverted for cytosolic overproduction and excretion of orotic acid. 50