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Natural Product (MVA)
Dr.G. C. Wadhawa
(Assistant Professor)
Dept. of Chemistry,
Karmaveer Bhaurao Patil College Vashi
,Navi Mumbai ,Maharashtra India .
Biogenesis
Syntheis of organic copmpounds (Natural Products) in living organism.
Biogenesis – Proposal
Biosynthesis - Proof
Biogenesis a Green Chemistry
Nature Lab. Processes
1. Enzyme catalysed 1. Catalysed used
2. Enzymes (Highly specific) 2. Catalysts (Not specific)
3. Physiological conditions 3. Experimental conditions
Ph = 7 Room temperature. (Variable)
4. H2O is a solvent 4. Organic solvents are
used (Hazardous)
5. Environmentally Benign 5. Environment polluting
General approach to study Biogenesis or Biosynthetic routes-.
1. Identification of Biological precussors-
The biological precursors are traced out by feeding the organism with isototrically
labelled material and finding out where and how much of it is incorporated in the natural
products.
H2, H3, C13, O18, P32 etc.
Ex. Rubber (polyterpenoid)
Rubber plant feeding with labelled acetate units and the rubber synthesized is examined.
2. Conversion of Biological precurssor into Natural product-
Each step in the Biosynthesis is studied.
Each enzyme is isolated and entire sequence is reconstructed.
Ex. Biosynthesis of fatty acids, Terpenoids, Steriods etc.
Terpenoids (Biogenesis)
It was suggested that isoprene was the building block (Biological precursor) for
terpenoids.
Tail
Head
Tail
Head
Isoprene units
Head to tail unions
Polyisoprene
Limonene (Dipentene)
Unforturately isoprene has never been isolated from natural sources- Isoprene
hypothesis was discarded. It was assumed that the Biological-Precursor is a unit
of five carbons (C5-unit) if not isoprene unit.
 Pioneering work since 1965 mainely by groups headed by Bloch, Lynen, Cornforth
and Popjak resulted in elucidation of biosynthetic pathway.
Biosynthesis of C5-unit
C5 units synthesised in plants from (Mevalonats)
C2 units (Acetates) proved by labelling expts.
C
O
OHH3C
CoASH C
O
SH3C CoA
Acetyl-CoA
C
O
SH3C CoA
C SH2C CoA
O
C
O H2
CH3C C S CoA
O
Acetoacetyl-CoA
Acetoacetyl-CoA thiolase Enzyme
(Equivalent to Claisen condensation)
C
O H2
CH3C C S CoA
O
C SH2C CoA
O
HMG-CoA
C
OHH3C
H2C CH2
CC
O O
SS CoACoA
HMG-CoA- Hydroxymethyl gutaryl Co-A B-Hydroxyl-B-Methyl Glutaryl Co-A
Hydrolysis
C CS S
O O
CoAHO
OH
1
23
4
CoASH
[S]
Polymerisation of Isoprenoid Units
C5 + C5 C10 (GPP) Monoterpenoids
C10+ C5
C15 (FPP) Sesquiterpenoids
C15 + C5
C20 (GGPP) Diterpenoids
C20 + C5
C30 (Sqnalene) Triterpenoids/Steroids
Acyclic Monoterpenoids
OPP
GPP
H2O
Geranids
OH
Oxidation
CHO
Citral
OPP
HH
PPO
OPP
GPP
OPP
OPP
H2O
OH
Linalool
-H2O
Myrcene
Isomerisation
Ocimene
Cyclic Monoterpenoids
OPP
1, 61
2
3
4
5 6
7
1
2
3
4
5 6
7
C7
H2O
-H
H shift
OH
Limonene
H
a-Terpineol
a-Terpinene
Menthane
=
OOH
Borneol Camphor
HH
H
H
H
b-pinene
a-pinene
H shift
Thujene
Sabinene
Sesquiterpenes (FPP) C15-units
OPP
OPP
HH
C10 C5
OPP
FPP
1
2
3
4
5
6
7
8
9 10
11
OPP
1
2
3
4
5
6
7
8
9 10
11
[E, E]
OPP
[E, Z]
OPP
[Z, Z]
OPP
[Z, E]
Modes of cyclisation
1, 6 Bond formation
1, 10 Bond formation
1, 11 Bond formation
OPP
1
2
3
4
5
67
8
9 10
11
FPP
1
2 3
4
56
78
9 10
11
-H
-H
-H
c-Bisabolene
a-Bisabolene
b-Bisabolene
1, 6 Cyclizations (Bisabolenes)
References
1) Cutler S, Cutler HG (2000). Biologically Active Natural
Products: Pharmaceuticals. CRC Press. p. 5. ISBN 978-0-8493-
1887-0.
2) Webster's Revised Unabridged Dictionary (1913). "Natural product".
Free Online Dictionary and C. & G. Merriam Co. A chemical substance
produced by a living organism; - a term used commonly in reference to
chemical substances found in nature that have distinctive pharmacological
effects. Such a substance is considered a natural product even if it can be
prepared by total synthesis.
3) "All natural". Nature Chemical Biology. 3 (7): 351. July
2007. doi:10.1038/nchembio0707-351. PMID 17576412. The simplest
definition for a natural product is a small molecule that is produced by a
biological source.

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Natural product mva

  • 1. Natural Product (MVA) Dr.G. C. Wadhawa (Assistant Professor) Dept. of Chemistry, Karmaveer Bhaurao Patil College Vashi ,Navi Mumbai ,Maharashtra India .
  • 2. Biogenesis Syntheis of organic copmpounds (Natural Products) in living organism. Biogenesis – Proposal Biosynthesis - Proof Biogenesis a Green Chemistry Nature Lab. Processes 1. Enzyme catalysed 1. Catalysed used 2. Enzymes (Highly specific) 2. Catalysts (Not specific) 3. Physiological conditions 3. Experimental conditions Ph = 7 Room temperature. (Variable) 4. H2O is a solvent 4. Organic solvents are used (Hazardous) 5. Environmentally Benign 5. Environment polluting
  • 3. General approach to study Biogenesis or Biosynthetic routes-. 1. Identification of Biological precussors- The biological precursors are traced out by feeding the organism with isototrically labelled material and finding out where and how much of it is incorporated in the natural products. H2, H3, C13, O18, P32 etc. Ex. Rubber (polyterpenoid) Rubber plant feeding with labelled acetate units and the rubber synthesized is examined. 2. Conversion of Biological precurssor into Natural product- Each step in the Biosynthesis is studied. Each enzyme is isolated and entire sequence is reconstructed. Ex. Biosynthesis of fatty acids, Terpenoids, Steriods etc.
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  • 11. Terpenoids (Biogenesis) It was suggested that isoprene was the building block (Biological precursor) for terpenoids. Tail Head Tail Head Isoprene units Head to tail unions Polyisoprene Limonene (Dipentene) Unforturately isoprene has never been isolated from natural sources- Isoprene hypothesis was discarded. It was assumed that the Biological-Precursor is a unit of five carbons (C5-unit) if not isoprene unit.  Pioneering work since 1965 mainely by groups headed by Bloch, Lynen, Cornforth and Popjak resulted in elucidation of biosynthetic pathway.
  • 12. Biosynthesis of C5-unit C5 units synthesised in plants from (Mevalonats) C2 units (Acetates) proved by labelling expts. C O OHH3C CoASH C O SH3C CoA Acetyl-CoA C O SH3C CoA C SH2C CoA O C O H2 CH3C C S CoA O Acetoacetyl-CoA Acetoacetyl-CoA thiolase Enzyme (Equivalent to Claisen condensation)
  • 13. C O H2 CH3C C S CoA O C SH2C CoA O HMG-CoA C OHH3C H2C CH2 CC O O SS CoACoA HMG-CoA- Hydroxymethyl gutaryl Co-A B-Hydroxyl-B-Methyl Glutaryl Co-A Hydrolysis C CS S O O CoAHO OH 1 23 4 CoASH [S]
  • 14. Polymerisation of Isoprenoid Units C5 + C5 C10 (GPP) Monoterpenoids C10+ C5 C15 (FPP) Sesquiterpenoids C15 + C5 C20 (GGPP) Diterpenoids C20 + C5 C30 (Sqnalene) Triterpenoids/Steroids Acyclic Monoterpenoids OPP GPP H2O Geranids OH Oxidation CHO Citral OPP HH PPO OPP GPP
  • 15. OPP OPP H2O OH Linalool -H2O Myrcene Isomerisation Ocimene Cyclic Monoterpenoids OPP 1, 61 2 3 4 5 6 7 1 2 3 4 5 6 7 C7 H2O -H H shift OH Limonene H a-Terpineol a-Terpinene
  • 17. Sesquiterpenes (FPP) C15-units OPP OPP HH C10 C5 OPP FPP 1 2 3 4 5 6 7 8 9 10 11 OPP 1 2 3 4 5 6 7 8 9 10 11 [E, E] OPP [E, Z] OPP [Z, Z] OPP [Z, E] Modes of cyclisation 1, 6 Bond formation 1, 10 Bond formation 1, 11 Bond formation
  • 18. OPP 1 2 3 4 5 67 8 9 10 11 FPP 1 2 3 4 56 78 9 10 11 -H -H -H c-Bisabolene a-Bisabolene b-Bisabolene 1, 6 Cyclizations (Bisabolenes)
  • 19. References 1) Cutler S, Cutler HG (2000). Biologically Active Natural Products: Pharmaceuticals. CRC Press. p. 5. ISBN 978-0-8493- 1887-0. 2) Webster's Revised Unabridged Dictionary (1913). "Natural product". Free Online Dictionary and C. & G. Merriam Co. A chemical substance produced by a living organism; - a term used commonly in reference to chemical substances found in nature that have distinctive pharmacological effects. Such a substance is considered a natural product even if it can be prepared by total synthesis. 3) "All natural". Nature Chemical Biology. 3 (7): 351. July 2007. doi:10.1038/nchembio0707-351. PMID 17576412. The simplest definition for a natural product is a small molecule that is produced by a biological source.