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ST JOHN’S UNIVERSITY OF TANZANIA

FACULTY OF NATURAL AND APPLIED SCIENCES
            CHEMISTRY DEPT

             CHE 326: MEDICINAL CHEMISTRY

   Instructors: SHADRACK, M. AND DOMINIC P.
 12/3/2011                Shadrack, M (SJUT).   1
Medicinal Chemistry
                • Medicinal chemistry is the science
                  that deals with the discovery of
                  therapeutic chemicals and their
                  development into useful medicines
                • Medicinal chemistry has been
                  practiced for thousands of years
                • The earliest written records of the
                  African, Chinese, Indian, South
                  American, and Mediterranean
                  cultures and biblical languages
                  describe the therapeutic effects of
                  various plant concoctions
                • Man has search for cures by chewing
12/3/2011         on Shadrack, M (SJUT).
                      bark, roots, leaves and berries 2
Medicinal chemistry
is defined as the branch of science that
  studies pharmaceuticals and their
  mode of action in the organism.
  Pharmaceuticals are substances,
  other than food that are
  administered to alleviate the effect
  or treat the cause of disease.
12/3/2011         Shadrack, M (SJUT).   3
Medicinal chemistry

• The science that deals with the discovery
  or design of new therapeutic agents and
  their development into useful medicines.
• It involves:
•    Synthesis
•    Structure-Activity Relationships (SAR)
•    Receptor interactions
•   Absorption, distribution, metabolism, and
    excretion (ADME)




12/3/2011                         Shadrack, M (SJUT).   4
Introduction, cont…,
• The primary objective of medicinal
  chemistry is the design and discovery of
  new compounds that are suitable for use
  as drugs.
• This process involves a team of workers
  from a wide range of disciplines such as
  chemistry, biology biochemistry,
  pharmacology, mathematics, medicine
    and computing, amongst others.
12/3/2011             Shadrack, M (SJUT).    5
• Hence medicinal chemistry is an
  interdisplinary disciplines

It also involves
            • Chemistry- based disciplines
            • Organic chemistry life science


12/3/2011                 Shadrack, M (SJUT).   6
• Summary
   Medicinal Chemistry is an interdisciplinary
       science situated at the interface of organic
       chemistry and life sciences (such as biochemistry,
       pharmacology, molecular biology, immunology,
       pharmacokinetics and toxicology) on one side and
       chemistry-based disciplines (such as physical
       chemistry, crystallography, spectroscopy and
       computer-based information technologies) on the
       other.
                              Medicinal Chemistry
                                                        Organic Chemistry
            Chemistry based                               Life Sciences
              disciplines

12/3/2011                         Shadrack, M (SJUT).                       7
• The discovery or design of a new drug not only
  requires a discovery or design process but also:
   – The synthesis of drug
   – A method of administration
   – The development of tests and procedure to
     establish how it operates in the body, and
   – Safety assessment

 12/3/2011            Shadrack, M (SJUT).            8
• Drug discovery may also require fundamental
  research into the biological and chemical
  nature of the diseased state.

• These and other aspects of drug design and
  discovery require input from specialists in
  many other fields and so medicinal chemists
  need to have an outline knowledge of the
  relevant aspects of these fields.
12/3/2011           Shadrack, M (SJUT).         9
Where Did (Do) Our Drugs Come From?
Natural sources.
• Since ancient times the peoples of
  the world have had a wide range of
  natural products that they use for
  medicinal purposes.
• These products, obtained from
  animal, plants & vegetable and
  mineral sources, were sometimes
  very effective.

12/3/2011          Shadrack, M (SJUT).   10
New drugs from old poisons




                                         CH3         O
            HO                                                                 CH3O
                                                 O
                                   CH3       O        O
HO           O                                                          N CH3 CH3O O
                                   N CH3 O                          H                            N CH3
                           H                         O                                     H
                                              O
            HO                                                                  HO
   O                                             O        CH3       N CH3         O
                     morphine
                      N CH     3                                H                      codeine   N CH3
                 H                           O       heroin                                 H
HO                                                                             HO
                                         O        CH3
       morphine                                                                        codeine
                                             heroin



12/3/2011                                            Shadrack, M (SJUT).                                 11
Note.
At least a quarter of all prescription dispensed in
  the US and UK contains, as active cpds,
  molecules derived from flowering plants.
Other data show that 12 out of the 25 highest
  earning drugs in 1995 were natural products
The importance of plants as medicines in the
  developing world should be also be
  acknowledged, here they are estimated to
  comprise 80% of the medication uses in the
  primary health care. (source, Houghton, P.J
12/3/2011            Shadrack, M (SJUT).          12
“Roots of remedies: Plants, plants and
  pharmaceuticals”, Chem Ind. 1995)

Other Examples of Natural Products as
 Leads & Drugs
Cardiac glycosides, morphine, quinine,
 salicylic acid, taxol, camptothecin, penicillin,
 cyclosporin A, warfarin, artemisine



12/3/2011            Shadrack, M (SJUT).       13
12/3/2011   Shadrack, M (SJUT).   14
12/3/2011   Shadrack, M (SJUT).   15
Organic synthetic agents
• Drugs have been synthesized from other drugs
  using synthesizing agents.

For example.

• Paul Ehrlich was looking for a safer
  antiprotozoal agent with which to treat
  syphilis than the then currently used atoxyl.
12/3/2011            Shadrack, M (SJUT).          16
12/3/2011   Shadrack, M (SJUT).   17
The synthesis of penicillin analogue.




e.g Ampicillin
  Penicillin G both synthesized from penicillin




12/3/2011           Shadrack, M (SJUT).       18
12/3/2011   Shadrack, M (SJUT).   19
12/3/2011   Shadrack, M (SJUT).   20
General process of drug discovery

• Medicinal chemistry relates to
  the design and production of
  compounds that can be used in
  medicine for the prevention,
  treatment or cure of human and
  animal diseases
12/3/2011      Shadrack, M (SJUT).    21
General process of drug discovery

Three critical steps
Discovery
Optimization
Development


12/3/2011      Shadrack, M (SJUT).    22
Drug discovery cont…,
   • A discovery step consisting of the identification and
     production of new active substances usually called lead
     compounds. Leads can originate from synthetic organic
     chemistry, from natural sources or from biotechnological
     processes.

   • An optimization step that deals mainly with the synthetic
     modification of the lead structure in order to improve
     potency, selectivity and lessen toxicity. Its characteristics
     are the establishment and analysis of structure-activity
     relationships (SAR).

   • A development step consisting of:
      – the optimization of the synthetic route for bulk
        production
12/3/2011                     Shadrack, M (SJUT).                    23
- modification of the pharmacokinetic and
     pharmaceutical properties of the active
     substance to render it suitable for clinical
     use. This may cover optimization of
     properties associated with:
      • Chemical formulation
      • Solubility
      • Elimination of unpleasant taste or
        irritation
      • Reduction of pain at site of injection

12/3/2011            Shadrack, M (SJUT).       24

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Medicinal lecture 1 by Shadrack Madulu Daniel

  • 1. ST JOHN’S UNIVERSITY OF TANZANIA FACULTY OF NATURAL AND APPLIED SCIENCES CHEMISTRY DEPT CHE 326: MEDICINAL CHEMISTRY Instructors: SHADRACK, M. AND DOMINIC P. 12/3/2011 Shadrack, M (SJUT). 1
  • 2. Medicinal Chemistry • Medicinal chemistry is the science that deals with the discovery of therapeutic chemicals and their development into useful medicines • Medicinal chemistry has been practiced for thousands of years • The earliest written records of the African, Chinese, Indian, South American, and Mediterranean cultures and biblical languages describe the therapeutic effects of various plant concoctions • Man has search for cures by chewing 12/3/2011 on Shadrack, M (SJUT). bark, roots, leaves and berries 2
  • 3. Medicinal chemistry is defined as the branch of science that studies pharmaceuticals and their mode of action in the organism. Pharmaceuticals are substances, other than food that are administered to alleviate the effect or treat the cause of disease. 12/3/2011 Shadrack, M (SJUT). 3
  • 4. Medicinal chemistry • The science that deals with the discovery or design of new therapeutic agents and their development into useful medicines. • It involves: • Synthesis • Structure-Activity Relationships (SAR) • Receptor interactions • Absorption, distribution, metabolism, and excretion (ADME) 12/3/2011 Shadrack, M (SJUT). 4
  • 5. Introduction, cont…, • The primary objective of medicinal chemistry is the design and discovery of new compounds that are suitable for use as drugs. • This process involves a team of workers from a wide range of disciplines such as chemistry, biology biochemistry, pharmacology, mathematics, medicine and computing, amongst others. 12/3/2011 Shadrack, M (SJUT). 5
  • 6. • Hence medicinal chemistry is an interdisplinary disciplines It also involves • Chemistry- based disciplines • Organic chemistry life science 12/3/2011 Shadrack, M (SJUT). 6
  • 7. • Summary Medicinal Chemistry is an interdisciplinary science situated at the interface of organic chemistry and life sciences (such as biochemistry, pharmacology, molecular biology, immunology, pharmacokinetics and toxicology) on one side and chemistry-based disciplines (such as physical chemistry, crystallography, spectroscopy and computer-based information technologies) on the other. Medicinal Chemistry Organic Chemistry Chemistry based Life Sciences disciplines 12/3/2011 Shadrack, M (SJUT). 7
  • 8. • The discovery or design of a new drug not only requires a discovery or design process but also: – The synthesis of drug – A method of administration – The development of tests and procedure to establish how it operates in the body, and – Safety assessment 12/3/2011 Shadrack, M (SJUT). 8
  • 9. • Drug discovery may also require fundamental research into the biological and chemical nature of the diseased state. • These and other aspects of drug design and discovery require input from specialists in many other fields and so medicinal chemists need to have an outline knowledge of the relevant aspects of these fields. 12/3/2011 Shadrack, M (SJUT). 9
  • 10. Where Did (Do) Our Drugs Come From? Natural sources. • Since ancient times the peoples of the world have had a wide range of natural products that they use for medicinal purposes. • These products, obtained from animal, plants & vegetable and mineral sources, were sometimes very effective. 12/3/2011 Shadrack, M (SJUT). 10
  • 11. New drugs from old poisons CH3 O HO CH3O O CH3 O O HO O N CH3 CH3O O N CH3 O H N CH3 H O H O HO HO O O CH3 N CH3 O morphine N CH 3 H codeine N CH3 H O heroin H HO HO O CH3 morphine codeine heroin 12/3/2011 Shadrack, M (SJUT). 11
  • 12. Note. At least a quarter of all prescription dispensed in the US and UK contains, as active cpds, molecules derived from flowering plants. Other data show that 12 out of the 25 highest earning drugs in 1995 were natural products The importance of plants as medicines in the developing world should be also be acknowledged, here they are estimated to comprise 80% of the medication uses in the primary health care. (source, Houghton, P.J 12/3/2011 Shadrack, M (SJUT). 12
  • 13. “Roots of remedies: Plants, plants and pharmaceuticals”, Chem Ind. 1995) Other Examples of Natural Products as Leads & Drugs Cardiac glycosides, morphine, quinine, salicylic acid, taxol, camptothecin, penicillin, cyclosporin A, warfarin, artemisine 12/3/2011 Shadrack, M (SJUT). 13
  • 14. 12/3/2011 Shadrack, M (SJUT). 14
  • 15. 12/3/2011 Shadrack, M (SJUT). 15
  • 16. Organic synthetic agents • Drugs have been synthesized from other drugs using synthesizing agents. For example. • Paul Ehrlich was looking for a safer antiprotozoal agent with which to treat syphilis than the then currently used atoxyl. 12/3/2011 Shadrack, M (SJUT). 16
  • 17. 12/3/2011 Shadrack, M (SJUT). 17
  • 18. The synthesis of penicillin analogue. e.g Ampicillin Penicillin G both synthesized from penicillin 12/3/2011 Shadrack, M (SJUT). 18
  • 19. 12/3/2011 Shadrack, M (SJUT). 19
  • 20. 12/3/2011 Shadrack, M (SJUT). 20
  • 21. General process of drug discovery • Medicinal chemistry relates to the design and production of compounds that can be used in medicine for the prevention, treatment or cure of human and animal diseases 12/3/2011 Shadrack, M (SJUT). 21
  • 22. General process of drug discovery Three critical steps Discovery Optimization Development 12/3/2011 Shadrack, M (SJUT). 22
  • 23. Drug discovery cont…, • A discovery step consisting of the identification and production of new active substances usually called lead compounds. Leads can originate from synthetic organic chemistry, from natural sources or from biotechnological processes. • An optimization step that deals mainly with the synthetic modification of the lead structure in order to improve potency, selectivity and lessen toxicity. Its characteristics are the establishment and analysis of structure-activity relationships (SAR). • A development step consisting of: – the optimization of the synthetic route for bulk production 12/3/2011 Shadrack, M (SJUT). 23
  • 24. - modification of the pharmacokinetic and pharmaceutical properties of the active substance to render it suitable for clinical use. This may cover optimization of properties associated with: • Chemical formulation • Solubility • Elimination of unpleasant taste or irritation • Reduction of pain at site of injection 12/3/2011 Shadrack, M (SJUT). 24