Ensemble multispecies modelling and the BlueBRIDGE initiativeBlue BRIDGE
Robert Thorpe, CEFAS, at BlueBRIDGE workshop on "Data Management services to support stock assessement", held during the Annual ICES Science conference 2016
Talk provided at the Institute of Fisheries Management (IFM) / Scottish Fisheries Co-ordination Centre (SFCC) workshop on scale reading, held at The Tweed Foundation, 26/03/2015.
Ensemble multispecies modelling and the BlueBRIDGE initiativeBlue BRIDGE
Robert Thorpe, CEFAS, at BlueBRIDGE workshop on "Data Management services to support stock assessement", held during the Annual ICES Science conference 2016
Talk provided at the Institute of Fisheries Management (IFM) / Scottish Fisheries Co-ordination Centre (SFCC) workshop on scale reading, held at The Tweed Foundation, 26/03/2015.
Populations and sustainability :- FisheriesDaniel Sandars
An hour long lecture on the role of Management and Operational Research in the governance of global fisheries. Global fisheries, like many open access natural resources, suffer for a tragedy of the commons effect. Population dynamic modelling can help provide the insights and understanding necessary to achieve sustainability.
Fishery -all the activities connected with the securing of animal and vegetable products from the earth waters.
Fishery products include such items as fish, clams, oysters, lobsters, eels, shrimps, turtles, seals, and whales. Pearl sponges, coral shells, and seaweeds are also included among the products derived from the sea. Fish provides the protein which is needed in the human diet. Fisheries are perhaps the most poorly managed of all the natural resources. The unscientific assumption that man can never exhaust the resources of the sea has placed upon nature the entire responsibility for renewal and replenishment.
Keynote presention to the 10th International Flatfish Symposium- addressing challenges for scientists when moving into the aren of the ecosystem approach tofisheries management
Climate change is dramatically challenging the assumption of a stable system; the assumption of stability underpins fisheries science, institutional governance structures, processing and access to markets. We need to ensure that fishing systems prepare and respond to inevitable oncoming change. Knowledge holders are now working together to find tools and solutions to maintain the resilience of fisheries. This talk highlights how to maintain sustainable harvesting of fish in the face of a changing environment, what paths can we take to ensure that fisheries remain resilient to climate change and what are the next steps for the GFCM community to transform the fisheries system? Ecosystem-based management offers us a framework, but how do we pragmatically take steps to build a stronger future for our fisheries?
Keynote speech by Mark Dickey-Collas at ICES symposium "Marine Ecosystem Acoustics - Observing the ocean interior across scales in support of integrated management", 28 May 2015, Nantes, France
Populations and sustainability :- FisheriesDaniel Sandars
An hour long lecture on the role of Management and Operational Research in the governance of global fisheries. Global fisheries, like many open access natural resources, suffer for a tragedy of the commons effect. Population dynamic modelling can help provide the insights and understanding necessary to achieve sustainability.
Fishery -all the activities connected with the securing of animal and vegetable products from the earth waters.
Fishery products include such items as fish, clams, oysters, lobsters, eels, shrimps, turtles, seals, and whales. Pearl sponges, coral shells, and seaweeds are also included among the products derived from the sea. Fish provides the protein which is needed in the human diet. Fisheries are perhaps the most poorly managed of all the natural resources. The unscientific assumption that man can never exhaust the resources of the sea has placed upon nature the entire responsibility for renewal and replenishment.
Keynote presention to the 10th International Flatfish Symposium- addressing challenges for scientists when moving into the aren of the ecosystem approach tofisheries management
Climate change is dramatically challenging the assumption of a stable system; the assumption of stability underpins fisheries science, institutional governance structures, processing and access to markets. We need to ensure that fishing systems prepare and respond to inevitable oncoming change. Knowledge holders are now working together to find tools and solutions to maintain the resilience of fisheries. This talk highlights how to maintain sustainable harvesting of fish in the face of a changing environment, what paths can we take to ensure that fisheries remain resilient to climate change and what are the next steps for the GFCM community to transform the fisheries system? Ecosystem-based management offers us a framework, but how do we pragmatically take steps to build a stronger future for our fisheries?
Keynote speech by Mark Dickey-Collas at ICES symposium "Marine Ecosystem Acoustics - Observing the ocean interior across scales in support of integrated management", 28 May 2015, Nantes, France
Jenny Deakin and Donal Daly,Environmental Protection Agency present on the Water Framework Directive Integration and Coordination Unit's approach to delivering successful catchment management in Ireland.
Overview of Climate Change Adaptation Concepts presented at the 2018 Michigan Wetlands Association "Adapting Wetlands to Climate Change" workshop, hosted by NIACS.
"Integrated science for integrated management: fairy tale or finally here?" by Phillip Levin, Northwest Fisheries Science Center, USA
ICES ASC Plenary lecture Thursday 18 September 2014
An Atoll Futures Research Institute? Presentation for CANCCNAP Global Network
Presentation by Professor Jon Barnett, University of Melbourne, at the Coalition Of Low-Lying Atoll Nations on Climate Change (CANCC) peer learning cohort workshop on “National Adaptation Planning With a Focus on Coastal Adaptation” in North Malé Atoll, Maldives, between May 1 - May 3, 2024.
Science for Management and Development of Joint Statement (IWC5 Presentation)Iwl Pcu
Richard Kenchington
University of Wollongong - Australian National Centre for Ocean Resources and Security (ANCORS)
Presentation given during the 5th GEF Biennial International Waters Conference in Cairns, Australia (during the pre-conference workshop marine ecosystems, Global Change and Marine Resources).
Sydney Harbour: Innovative Environmental Data Science in Australia's most ico...Luke Hedge
Data Science can be used to inform environmental management and policy. We have been working with several NSW Government stakeholders to give insight into how the Sydney community interacts with it's beautiful harbour.
How do we protect our ecological restoration investments for the long-term? This workshop will guide managers through “climate-smart” restoration efforts, efforts that restore for future conditions in addition to past conditions. In this workshop we will interactively apply impacts of climate change from the most current scientific findings to examples of restoration efforts from throughout the Great Lakes while providing you with the tools to become “climate-smart.”
Similar to Limits to stock assessments & dynamic ecosystems model projections for management (20)
Presentation by ICES Advisory Committee Chair Mark Dickey-Collas at the discussion panel of the fifteenth round of informal consultations of the review of the UN Agreement on the Conservation and Management of Straddling Fish Stocks and Highly Migratory Fish Stocks.
ICES ASC 2016, Riga
Skills workshop, focus on how to get your work noticed once it has been published.
Line Reeh, Communications Officer, DTU Aqua, Denmark
ICES ASC 2016, Riga
Skills workshop on getting your scientific work published.
Jacob Carstensen, Professor, Institut for Bioscience - Arctic Research Centre, Aarhus University, Denmark
At MSEAS 2016, Mark Dickey-Collas introduces the ecosystem approach to the management of marine activities and how to make it operational.
http://www.ices.dk/news-and-events/symposia/MSEAS/Pages/MSEAS.aspx
ICES Benthos Ecology Working Group (BEWG) focuses primarily on long-term series and climate change, benthic indicators and EU directives, and species distribution modelling.
Presentation at ‘Marine environment and fisheries – applying the new CFP and environment policy together’ workshop at the European Commission, Brussels, Belgium, 21 May 2015
A summary of key findings from the IPCC 5th Assessment Report by Anne Hollowed, Alaska Fisheries Science Center, USA
SICCME open session, 17 September 2014, ICES Annual Science Conference, A Coruña, Spain
Summary of key findings of "Climate Change 2013: The Physical Science Basis, Working Group I contribution to the IPCC 5th Assessment Report" by Matt Collins, University of Exeter, UK
SICCME open session, 17 September 2014, ICES Annual Science Conference, A Coruña, Spain
Summary of key findings of Working Group III contribution to the IPCC 5th Assessment Report by Jake Rice, Department of Fisheries and Oceans, Canada
SICCME open session, 17 September 2014, ICES Annual Science Conference, A Coruña, Spain
Extraction from the ocean chapters of IPCC Working Group II contribution to 5th Assessment Report by Svein Sundby, Institute of Marine Research, Norway
SICCME open session, 17 September 2014, ICES Annual Science Conference, A Coruña, Spain
Ana Parma, Centro Nacional Patagónico, Argentina
Plenary lecture on 16 September 2014 at ICES Annual Science Conference
15-21 September 2014, A Coruña, Spain
"Prospects and opportunities in a changing marine science and policy landscape" - lecture by Dr Luis Valdés, Head Ocean Sciences, IOC-UNESCO
15 September 2014
ICES Annual Science Conference, A Coruña, Spain
ICES Strategic Plan, launched in 2014, commits to building a foundation of science around one key challenge: integrated ecosystem understanding. Here, Mark Dickey-Collas, ICES Ecosystem Professional Officer, explains what integrated means to ICES science and advice.
More from ICES - International Council for the Exploration of the Sea (17)
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Limits to stock assessments & dynamic ecosystems model projections for management
1. Limits to stock assessments & dynamic
ecosystems;
model projections for management
Twitter @DickeyCollas
Mark Dickey-Collas & Benjamin Planque
2. Panorama of stock assessments
and MSE approaches includes:
Isolated single stock Multispecies
Environmental dynamic Data poor
Ensemble approaches+ +
3. Why use environmental dynamic?
Improve understanding of past changes by
including environmental changes/shifts.
Improve predictions for management?
Look further forward than standard
stock assessments.
5. Hatun et al, 2009; Hatun et al 2009
Have the approaches been useful to
understand the past?
Blue whiting
6. Have the approaches been useful to
predict the future? Probably no.
Predicted year in which the conditions
become suitable for Atlantic cod.
Wisz et al. 2015
7. Have the approaches been useful to
predict the future? Probably no.
Simulated biomass of adult cod in
the Baltic Sea using 5 different food-
web models.
Niiranen et al. 2012
8. Why is prediction beyond short time
horizon so difficult? La grande illusion
Was the pet included in the pet model?
drawing Juliette Planque
9. Why is prediction beyond short time
horizon so difficult? La grande illusion
“Models might be of limited use to project the future state of marine
ecosystems decades into the future because several factors limit
predictability; including
● stochasticity ● deterministic chaos
● enablement vs. entailment ● non-ergodicity
● ecological surprises ● irreducibility
● limits to upscaling.”
10. La grande illusion
The known
The unknown
The unknownable
Conservation of mass and energy
Gravitation Fluid dynamics
ecological empirical observations
Fish recruitment
How many species
Trophic functional relationships
Complex interactions and the curse of dimensionality
Natural mortality
Single pendulum
11. La grande illusion
The known
The unknown
The unknownable
Conservation of mass and energy
Gravitation Fluid dynamics
ecological empirical observations
Fish recruitment
How many species
Trophic functional relationships
Complex interactions and the curse of dimensionality
Natural mortality
Single pendulum
Double pendulum
13. Are models geared up to predict future
states? Hazard warning
Impossible to achieve realism, precision, and generality together.
Model creation requires trade-off of one of these, often in conflict with
the desires of end-users.
Models are often employed without consideration of their limitations,
such as projecting into unknown space without generalism, or fitting
empirical models and inferring causality.
14. Do we need predictions beyond a few
years for robust management?
• Accept we only ever have partial understanding
• We have ongoing monitoring and assessment
• Business planning or fisheries management?
• Adaptive management
• Time line – a few years or longer?
15. Operational Recommendations
• Keep monitoring and prepare for change
• Remain responsive and adapt
• Use MSE but don’t trust it
Science 2015