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IMPUTATION OF MISSING DATA
IN CLINICAL TRIALS
Seema Ahirwar
Flow of presentation
• Introduction
• Reasons
• Effect on Data Analysis and Interpretation
• Mechanism of Missing data
• Types of methods for imputation of missing
data
Missing data
Definition
• Missing data are defined as values that are not
available and that would be meaningful for analysis if
they were observed
Principle for dealing with missing data
 Analysing only the available data
 Imputing the missing data with replacement values
Reasons For Missing Data
• Patient refusal to continue in the study
• Patient withdrawals due to treatment failure
• Adverse events
• Patients moving
• Data is unreported or uncollected
• Missing Data Due to Death
The Effect of Missing Values on Data
Analysis and Interpretation
 Bias
 Loss of efficiency
 Power and variability
Three Scenarios for Missing Data
 Missing completely at random
 Data are missing at random
 Data are missing not at random
Missing completely at random
Missing does not depend on observed or
unobserved measurements then the observation
is Missing Completely At Random (MCAR)
Example – Patient moving to another city for
non health reasons
- Dropped test tube in a lab or equipment
failure
Data are missing at random
 missing depends only on observed measurements
then the observation is Missing At Random (MAR)
Example – when a patient drop’s out due to lack of
efficacy reflected by a series of poor efficacy
outcomes
Data are missing not at random
 missing depends on unobserved measurements
Example – After a series of visits with good outcome a
patient drop out due to lack of efficacy
Types of methods for imputation of
missing data
 Complete-case analysis
 Single imputation methods
 Multiple imputation
 Mixed models and generalised estimating equations
Complete-case analysis
• Participants with missing data are simply excluded from the
analysis it involves only complete cases
• Complete case analysis cannot be use as the primary analysis
Disadvantages
 reduces sample size
 reduced statistical efficiency of estimates
 violates the intention to treat principle and is subject to bias
Single imputation methods
 Single value is filled in for each missing value
by means of methods such as
• Last observation carried forward
• Baseline observation carried forward
• Worst observation carried forward
last observation carried forward
 This analysis imputes the last measured value
Advantages
It generates a complete data set
Easy to implement
Disadvantages
some time it provide inappropriate estimate of
the treatment effect and biased in favour of the test
product
Baseline observation carried forward
 The baseline-observation-carried-forward (BOCF) is
method to handle missing data from early treatment
discontinuation
 Example, a chronic pain trial where a patient
withdraws from treatment it is assume that pain return
to its baseline level
Worst observation carried forward
• Impute the worst possible value of the
outcome to dropouts for a negative reason like
treatment failure and adverse effect
Multiple imputation Method
• Multiple imputation methods generate multiple
copies of the original dataset by replacing
missing values
• Application of the technique requires three
steps imputation, analysis and pooling
Cont…..
• Imputation: Impute the missing entries of the
incomplete data sets, not once, but m’ times
Imputed values are different for each missing
entry this step results in “m’ complete data sets.
• Analysis: Analyze each of the m’ completed data
sets
• Pooling: Integrate the m’ analysis results into a
final result
Mixed models and generalised
estimating equations
 These are some statistical approaches for handling
missing data
• Mixed-effect models for repeated measures (MMRM)
• Generalized estimating equations(GEE)
• Generalized linear mixed models (GLMM)
Imputation of missing data in clinical trials

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Imputation of missing data in clinical trials

  • 1. IMPUTATION OF MISSING DATA IN CLINICAL TRIALS Seema Ahirwar
  • 2. Flow of presentation • Introduction • Reasons • Effect on Data Analysis and Interpretation • Mechanism of Missing data • Types of methods for imputation of missing data
  • 3. Missing data Definition • Missing data are defined as values that are not available and that would be meaningful for analysis if they were observed Principle for dealing with missing data  Analysing only the available data  Imputing the missing data with replacement values
  • 4. Reasons For Missing Data • Patient refusal to continue in the study • Patient withdrawals due to treatment failure • Adverse events • Patients moving • Data is unreported or uncollected • Missing Data Due to Death
  • 5. The Effect of Missing Values on Data Analysis and Interpretation  Bias  Loss of efficiency  Power and variability
  • 6. Three Scenarios for Missing Data  Missing completely at random  Data are missing at random  Data are missing not at random
  • 7. Missing completely at random Missing does not depend on observed or unobserved measurements then the observation is Missing Completely At Random (MCAR) Example – Patient moving to another city for non health reasons - Dropped test tube in a lab or equipment failure
  • 8. Data are missing at random  missing depends only on observed measurements then the observation is Missing At Random (MAR) Example – when a patient drop’s out due to lack of efficacy reflected by a series of poor efficacy outcomes
  • 9. Data are missing not at random  missing depends on unobserved measurements Example – After a series of visits with good outcome a patient drop out due to lack of efficacy
  • 10. Types of methods for imputation of missing data  Complete-case analysis  Single imputation methods  Multiple imputation  Mixed models and generalised estimating equations
  • 11. Complete-case analysis • Participants with missing data are simply excluded from the analysis it involves only complete cases • Complete case analysis cannot be use as the primary analysis Disadvantages  reduces sample size  reduced statistical efficiency of estimates  violates the intention to treat principle and is subject to bias
  • 12. Single imputation methods  Single value is filled in for each missing value by means of methods such as • Last observation carried forward • Baseline observation carried forward • Worst observation carried forward
  • 13. last observation carried forward  This analysis imputes the last measured value Advantages It generates a complete data set Easy to implement Disadvantages some time it provide inappropriate estimate of the treatment effect and biased in favour of the test product
  • 14. Baseline observation carried forward  The baseline-observation-carried-forward (BOCF) is method to handle missing data from early treatment discontinuation  Example, a chronic pain trial where a patient withdraws from treatment it is assume that pain return to its baseline level
  • 15. Worst observation carried forward • Impute the worst possible value of the outcome to dropouts for a negative reason like treatment failure and adverse effect
  • 16. Multiple imputation Method • Multiple imputation methods generate multiple copies of the original dataset by replacing missing values • Application of the technique requires three steps imputation, analysis and pooling
  • 17. Cont….. • Imputation: Impute the missing entries of the incomplete data sets, not once, but m’ times Imputed values are different for each missing entry this step results in “m’ complete data sets. • Analysis: Analyze each of the m’ completed data sets • Pooling: Integrate the m’ analysis results into a final result
  • 18. Mixed models and generalised estimating equations  These are some statistical approaches for handling missing data • Mixed-effect models for repeated measures (MMRM) • Generalized estimating equations(GEE) • Generalized linear mixed models (GLMM)