This document discusses several concepts related to genetics:
1. It describes incomplete dominance and codominance, using the example of flower color in petunias.
2. It explains lethal alleles and how they can cause death in homozygous or heterozygous individuals. Examples given include coat color in mice and genes in cattle and humans.
3. Multiple alleles are discussed, which have varying levels of dominance and control traits like eye color in fruit flies and coat color in rabbits.
GENETICS
CYTOGENETICS
Definition of Linkage, Coupling and Repulsion hypothesis, Linkage group- Drosophila, maize and man, Types of linkage-complete linkage and incomplete linkage, Factors affecting linkage- distance between genes, age, temperature, radiation, sex, chemicals and nutrition, Significance of linkage.
The tendency of two or more genes to stay together (i.e., the co-existence of two or more genes) in the same chromosome during inheritance is known as LINKAGE. The linked genes are present on the same chromosome are said to be SYNTENIC. The linked genes do not show independent assortment.
LINKAGE v/s INDEPENDENT ASSORTMENT
The frequency of linkage or the strength recombination is influenced by several factors (agents).
According to Hardy (England,1908) and Weinberg (Germany,1909), gene and genotype frequency of a Mendelian population remain constant generation after generation unless there is selection,mutation,migration or random drift.
This PPT consists of 24 slides explaining Polygenic Inheritance . Some traits are controlled by two or more genes. These traits differ from Mendelian traits and donot show discrete alternative or contrasting forms and show continuous ranges. Examples of such traits are wheat seed colour, plant height, Human skin colour controlled by at least three genes showing many shades of dark and fare, human height, human eye colour etc
GENETICS
CYTOGENETICS
Definition of Linkage, Coupling and Repulsion hypothesis, Linkage group- Drosophila, maize and man, Types of linkage-complete linkage and incomplete linkage, Factors affecting linkage- distance between genes, age, temperature, radiation, sex, chemicals and nutrition, Significance of linkage.
The tendency of two or more genes to stay together (i.e., the co-existence of two or more genes) in the same chromosome during inheritance is known as LINKAGE. The linked genes are present on the same chromosome are said to be SYNTENIC. The linked genes do not show independent assortment.
LINKAGE v/s INDEPENDENT ASSORTMENT
The frequency of linkage or the strength recombination is influenced by several factors (agents).
According to Hardy (England,1908) and Weinberg (Germany,1909), gene and genotype frequency of a Mendelian population remain constant generation after generation unless there is selection,mutation,migration or random drift.
This PPT consists of 24 slides explaining Polygenic Inheritance . Some traits are controlled by two or more genes. These traits differ from Mendelian traits and donot show discrete alternative or contrasting forms and show continuous ranges. Examples of such traits are wheat seed colour, plant height, Human skin colour controlled by at least three genes showing many shades of dark and fare, human height, human eye colour etc
Genetic linkage is the tendency of DNA sequences that are close together on a chromosome to be inherited together during the meiosis phase of sexual reproduction.
It is the fundamental law of population genetics and provides the basis for studying Mendelian populations ( Mendelian population: A group of sexually inbreeding organisms living within a circumscribed area). It describes populations that are not evolving.
Inability of a plant with functional pollen to set seed when self-pollinated.
Hindrance to self-fertilization.
Prevents inbreeding and promotes outcrossing.
Reported in about 70 families of angiosperms including crop species.
Genetic linkage is the tendency of DNA sequences that are close together on a chromosome to be inherited together during the meiosis phase of sexual reproduction.
It is the fundamental law of population genetics and provides the basis for studying Mendelian populations ( Mendelian population: A group of sexually inbreeding organisms living within a circumscribed area). It describes populations that are not evolving.
Inability of a plant with functional pollen to set seed when self-pollinated.
Hindrance to self-fertilization.
Prevents inbreeding and promotes outcrossing.
Reported in about 70 families of angiosperms including crop species.
Please answer all questionsDefine1. Wild type –2. Epistasis –.pdfdhavalbl38
Please answer all questions
Define
1. Wild type –
2. Epistasis –
Fill in the Blank
3. Two genes may interact effecting one trait and resulting in novel phenotypes with an F2
phenotypic ________________ ratio.
4. Under ________________ conditions, conditionally lethal mutants will die.
True or False
5. Penetrance is the degree or intensity with which a particular genotype is expressed in a
phenotype.
6. Continuous traits are usually controlled by multiple genes and may be influenced by the
environment.
Short Answer
7. Describe the inheritance pattern(s) of blood types.
8. When studying a newly discovered flowering plant in Costa Rica, you collect data on its petal
color in an effort to determine how this trait may be inherited. You find that 852 flowers are red,
331 are white and 389 are yellow. What are the possible inheritance patterns, and how could you
definitely conclude which of these possibilities is the true mode of inheritance?
Solution
Wild type- wild type phenotype refers to characteristics that occurs naturally in a breeding
population.
Epistasis - it refers to a phenomena when one gene’s expression is dependent on the presence of
another gene(s), called the modifier gene.
9:16
Let\'s take an example of comb varieties in chicken
We have two pure breeds : wyandotte whose phenotype is a rose comb and brahmas having the
phenotype of a pea comb, when crossed with each other, they create a completely new phenotype
of a walnut comb. Let\'s look at the ratio:
Parental cross: rose comb x pea comb
F1 : all walnut combs
F2 : 9 walnut : 3 rose: 3peas : 1 single
Hence the ratio is 9:16
Under the restrictive or nonpermissive condition conditions, conditionally lethal mutants will
die.
Conditionally lethal mutants are those which have an allele that will make the survival of the
species difficult only in a specific condition.
True. for example if a mutation in a gene gives the species a particular characterisitc which has
97%penetrance, only 97% of those with the mutation will develop that characteristic and 3 %
will not.
True. multiple genes affect continuous traits. For such complex gene interactions, the traits are
influenced by environmental factors too. For example, height and skin color.
There are four basic blood types which are A, B, AB and O and together with the Rh factor,
these can be +ve or -ve.
A and B are dominant, while O is recessive.
Blood type
A
B
O
A
A
AB
A
B
AB
B
B
O
A
B
O
For Rh factor, Rh (+)ve is dominant.
So if the any one or both parents have Rh (+)ve factor, the progeny will be Rh(+)ve.
If both parents are Rh(-)ve, the progeny will be Rh (-)ve
Father
Mother
D
D
d
Dd
Dd
d
Dd
Dd
100% Rh (+)ve children
Father
Mother
D
d
d
Dd
dd
d
Dd
dd
50% Rh(+)ve children
Red: 852
White: 331
Yellow:389
According to the given data, red is dominant and white is recessive and yellow is a result of
incomplete dominance of both white and red phenotype.
It can\'t be codominance, because codominance involves both phenotypes being expressed in
di.
Genetics- Chapter 5 - Principles of inheritance and variation.docxAjay Kumar Gautam
Genetics is a branch of biology concerned with the study of genes, genetic variation, and heredity in organisms. Though heredity had been observed for millennia, Gregor Mendel, Moravian scientist and Augustinian friar working in the 19th century in Brno, was the first to study genetics scientifically. Mendel studied "trait inheritance", patterns in the way traits are handed down from parents to offspring over time. He observed that organisms (pea plants) inherit traits by way of discrete "units of inheritance". This term, still used today, is a somewhat ambiguous definition of what is referred to as a gene.
This power point presentation is designed to explain deviation of Mendelian dihybrid ratio due to interaction of genes which may be of following types
1.Two gene pairs affecting same character – 9:3:3:1
2.Epistasis, one gene hides effect of other
a) Recessive Epistasis - 9:3:4
b) Dominant epistasis - 12:3:1
3.Complementary genes - 9:7 ( 2 genes responsible for production of a particular phenotype )
4. Duplicate genes – 15:1 ( same effect given by either of two genes )
5. Polymeric gene action - 9:6:1
6. Inhibitory gene action - 13 : 3
Each interaction is typical in itself and ratios obtained are different
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
7. Q1) The 4O’ clock plant has one variety with red flowers and other
variety with white flowers. From a pure crossing of these two
varieties all the F1 has pink flowers. The F2 offspring produce 142
pink, 68 white and 73 red flowers. How these flowers are inheriting?
7
8. Q2) Give the genotypes and phenotypes of progeny from the
following crosses in the 4O’ clock plant.
i. White X White
ii. White X Pink
iii. Red X Pink
iv. Red X Red
v. Pink X Pink
vi. Red X White
8
9. 9
b) Lethal allele
Some genes - cause death during early stage of development
(before sexual maturation)
A fully dominant lethal allele - arise by mutation from a wild
type allele
Dominant lethal genes - lost from the heterozygous
organism called as gene erosion
Most of all lethal genes are recessive (death only
homozygous)
There are two types of lethal alleles
10. 10
1. One that has no obvious phenotypic effect in heterozygous
a. Mice coat colour
Dominant homozygous causes death during embryonic stage
b. Aurea gene in Antirrhinum majus
It produces yellow leaf due to lack of chlorophyll in heterozygous
c. Dexter gene in cattle
d. Achondroplastic dwarfness in man
15. 15
2. One that exhibit a distinctive phenotype when heterozygous
The amount of chlorophyll in snapdragons is controlled by a pair of
alleles C1 and C2
One of which C2 exhibits lethal effect when homozygous and a
distinctive colour phenotype when heterozygous
Thus with regard to colour these alleles are incomplete dominant
However, with regard to viability the C2 allele is fully recessive that
the C2 allele only causes death when C1 is absent
17. Alleles that lack of dominant and recessive relationship and are both
observed phenotypically to some degree are co-dominant
This means that the phenotypic effect of each allele is observable in
heterozygous condition
Hence the heterozygous genotypes give rise to a phenotype
distinctly different from either of the homozygous genotype but
possess characteristics of each other
For co-dominant alleles all upper case base symbol with different
superscripts are used.
c. Co - dominant allele
20. 20
Qu) Coat colours of short horned breed of cattle represent a classical
example of co-dominant allele. Red is governed by the genotype
CRCR, roan (mixture of red and white) by CRCW and white is CWCW.
a. When roan short horns are crossed among themselves what
genotypic and phenotypic ratios are expected among their progeny?
b. If red short horns are crossed with roans and the F1 progeny are
crossed among themselves to produce the F2. What percentage of F2
will probably be roan?
21. 21
More than two alleles - at a gene locus in a population
The series called multiple allele series
These alleles may have arisen as a result of mutation of the
dominant (wild) allele in a gene pair
d. Multiple allele
22. 22
Common characters of multiple allele
1. They occupy same locus within the homologous chromosome. In a diploid cell
any two alleles of such allele series are present in a pair of homologous
chromosome. The gamete of an organism contains only one allele of such
series.
2. Multiple allele controls the particular character but with varying degree of
efficiency.
3. The normal gene of the series act as dominant, overall such series alleles may
also behave as dominant, recessive and co-dominant among them.
4. The capital letter is commonly used to designate allele that is dominant to all
others in the series. The corresponding lower case letter designates the allele
that is recessive to all others in the series.
5. Other alleles, intermediate in their degree of dominance between these two
extremes are usually assigned the upper case letter with some suitable
superscript.
23. 23
Examples:
i. Eye colour of Drosophila
ii. Coat colour in rabbit
iii. Blood group in man
iv. Self sterility genes in plants. Eg: Red clove and Tobacco
25. 25
Differences in environmental condition/ in genetic backgrounds
may cause individuals that are genetically identical at a particular
locus to exhibit different phenotypes
The percentage of individuals with a particular gene combination
that exhibit the corresponding character to any degree represents
the penetrance of the trait.
e. Penetrance and expressivity
26. 26
The polydactyl (extra fingers and or toes) in human can be produced
by a dominant gene P. The wild type condition with five digits on
each limb is produced by the recessive gene p. However, some
heterozygous individuals (Pp) are not polydactylous. If 20% of Pp
individuals do not show polydactyl (that are wild type) the gene has
a penetrance of 80%. A trait although penetrant may be quite
variable in its level of expression. The degree of effect produce by a
penetrant genotype is term expressivity.
29. 29
A gene that has multiple phenotypic effects
It is a special interest because it helps in understanding the
relationships between different organisms of the same individuals
Examples:
I. Drosophila bar eyed individuals may be significantly altered by
the wing nature
II. Seed coat colour gene of sweet pea controls flower colour and
also red spot in leaf axils
III. Sickle cell anemia in human
2. Pleiotropism