This document discusses different types of genetic mutations. It defines mutations as changes in DNA sequences and describes two main types - spontaneous mutations that occur naturally and induced mutations caused by external mutagens. The document then describes several specific types of mutations: transition and transversion base substitutions, missense and nonsense point mutations, frameshift mutations, neutral mutations, and silent mutations. It explains the molecular mechanisms and consequences of each type.
It is the fundamental law of population genetics and provides the basis for studying Mendelian populations ( Mendelian population: A group of sexually inbreeding organisms living within a circumscribed area). It describes populations that are not evolving.
It is the fundamental law of population genetics and provides the basis for studying Mendelian populations ( Mendelian population: A group of sexually inbreeding organisms living within a circumscribed area). It describes populations that are not evolving.
Inheritance due to genes located in cytoplasm is called cytoplasmic inheritance.
Since genes governing traits showing cytoplasmic inheritance are located outside the nucleus and in the cytoplasm, they are referred to as plasmagenes.
Inheritance due to genes located in cytoplasm is called cytoplasmic inheritance.
Since genes governing traits showing cytoplasmic inheritance are located outside the nucleus and in the cytoplasm, they are referred to as plasmagenes.
Describe the role of different types of genomic changes in the evolut.pdfivylinvaydak64229
Describe the role of different types of genomic changes in the evolution of organisms. What are
the potential consequences of each of the following: chromosomal rearrangements; gene
duplications; insertion or deletions of transposons; mutations of homeotic genes or their
homeoboxes; polypoidy.
Solution
Genes are the hereditary units that pass the genetic information from one generation to the other
generation. Evolution is a process of development of new organisms as a result of genomic
modifications of the already existing species. The change in single nucleotide results in point
mutation, which is of different types such as silent mutations, missense mutations, nonsense
mutations, and frame shift mutations.
All mutations are not harmful. Mutations can either be good or neutral also. If the mutations
resulted in a new functional protein, which would be advantageous for the organism, they are
considered as good mutations. Mutation is the basic mechanism of evolution.
1). Chromosomal rearrangements or translocations involve the rearrangement of nonhomologous
chromosomal regions. This may result in viable or nonviable organisms.
For example, robertsonian translocation (ROB) is a type of chromosomal rearrangement (one
arm of chromosome goes to another chromosome and vice versa), which is observed in the five
chromosomal pairs of humans namely chromosome 13, 14, 15 21 and 22. These translocations
result in viable fetus.
2).
Gene duplication involved in the formation of autopolyploids and meiotic errors. Gene
duplication is often followed by divergent evolution. Eg: Duplication of single chromosomes
may cause autopolyploids. The three types of gene duplications are,
1). Duplication of entire genome
2). Duplication of single chromosome
3). Duplication of single chromosome of a group of genes
The proteins of globin superfamily are the example of proteins that exhibit gene divergence after
gene duplication.
3). Transposons are gene sequences (DNA, deoxyribonucleic acid) that can change their position
within the genome. Both prokaryotes and eukaryotes have transposons. In humans, about 45% of
genomes contain transposable elements.
A few mutagens induced into the coding exon region (Transposon insertion:) of gene thereby
insertion of new bases or deletion of the bases. Finally result in generation of truncated protein.
Transposon is a piece of DNA which gets inserted in to the DNA. All transposable elements
insert a staggered break in the DNA strand, means the strands become unequal, one become
large and another become small. The short DNA sequence can be found on both sides of a
transposable element, these are known as flanking direct repeats, and its sequence is
characteristic of each transposable element.
4).
Polyploidy is a state of having more than two paired homologous chromosomes. For example,
fusion of two diploid gametes of the plant or species in their 2n state result in tetraploids, we can
observe this in potato. Bananas and apples also pres.
Mutation
A mutation is a change in the DNA’s nucleotide sequence.
An abrupt shift in the nucleotide sequence causes an organism’s morphological traits to change. Such a change is referred to as a mutation if it is heritable.
So, mutation is defined as any heritable change in the sequence of nucleotide of DNA.
Features
Change in number- it is the change in the number or arrangement of nucleotide sequence of a gene.
It is heritable change in the DNA sequence.
Permanent structural change inherited material DNA effects
Can be harmful/beneficial or have no effects.
Can be sometimes attributed to random chance events.
Can be caused by mistakes during cell division or
May be caused by exposure to DNA damaging agents to the environment such as radiation and Mutagenic chemicals.
Types
Point mutation
-Silent Mutation
-Non sense Mutation
-Mis sense Mutation
Frame shift mutation
Substitution
Addition
Deletion
Causes
MUTAGENS
Physical
Chemical
Biological
Cell Biology and genetics paper - Mutation a basic touch to b.sc students with examples. DNA, genome, gene level mutation and chromosome level with examples. Touched some of the mutation types.
A mutation is a change in the DNA sequence of an organism. Mutations can result from errors in DNA replication during cell division, exposure to mutagens or a viral infection.2
Similar to General account on Mutation and its types.ppt (20)
Presentation includes a brief introduction of radiation and its types, processing and disposal methods of different radioactive waste and a note on nuclear accidents.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
3. Mutation
Genetic variation among individuals provides the raw
material for evolution.
Two major processes are responsible for genetic
variation, mutation and recombination.
Mutations [Latin mutare, to change] were initially
characterized as altered phenotypes or phenotypic
expressions.
In 1910, Hugo de vries gave the name mutation
when experiment on Oenothera lamarckiana
which shows spontaneous heritable changes.
4. Mutations occur in one of two ways.
(1) Spontaneous mutations arise occasionally in all cells
and develop in the absence of any added agent.
(2) Induced mutations, on the other hand, are the
result of exposure of the organism to some physical
or chemical agent called a mutagen.
Mutation may occur in somatic cell or germ cell.
7. Transition mutation
In a transition, a purine nucleotide is replaced with a
purine nucleotide, or a pyrimidine nucleotide is
replaced with a pyrimidine nucleotide.
8. Transversion mutation
In transversion, a purine nucleotide is replaced with a
pyrimidine nucleotide or a pyrimidine nucleotide is
replaced with a purine nucleotide.
9.
10. Missense mutation
A transition mutation from AT to GC change the
codon which leads to change in the aminoacid.
11. Molecular basis of sickle-cell anemia. Consequences of
base substitution example-missense mutation
The resulting hemoglobin is defective and tends to polymerize at low oxygen
concentration.
12. Nonsense mutation
A transversion mutation change the codon leads to
termination of protein synthesis.
13. Neutral mutation
A neutral mutation is a mutation that occurs in an
amino acid codon but it has no impact.
A change in a base pair results in an amino acid
change but the new amino acid has the same
chemical properties as old amino acid.
14. Silent mutation
In silent mutation, change in codon occurs such that
the same amino acid is specified.
15. Frameshift mutation
Frameshifts usually caused by the deletion or
addition of DNA segments resulting in an altered
codon reading frame.
16.
17.
18.
19. Conclusion
Any change of nucleotide sequences in one genome
can be considered as “mutation”.
Mutations occur in one of two ways i.e. Spontaneous
and induced.
Mutation may leads to loss of function or gain of
function.
Types of mutation are transition, transversion,
missense, nonsense, neutral, silent and frame shift.
20. References
Krebs. J. E., Goldstein. E. S., Kilpatric. S.T., Lewin’s essential Genes, III edition,
2013, John and Bartlett learning, Burlington. (pp 22-25)
Robinson. T. R., Genetics for Dummies, II edition, 2010(pp189-201)
https://www.google.co.in/search?rlz=1C1ASUM_enIN788IN788&tbm=isch&q=tr
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https://biologydictionary.net/point-mutation/
https://www.ncbi.nim.nih.gov/books/NBK21578/
http://bmg.fc.ul.pt/Disciplinas/FundBiolMolec/11aMutationRepair.pdf