Techniques in Biotechnology…
M.PHOOL BADSHAH
Lecture-7
DNA/RNA Quantification by
Spectrophotometer
Introduction
• A first step in many molecular biology investigations is
quantifying the quantity of DNA and RNA.
• An approach that is frequently used to measure nucleic acid
concentrations is UV-visible Spectrophotometry.
• Here's a basic rundown of how a spectrophotometer can be
used to measure DNA and RNA:
What is Beer’s Law?
• Beer’s law was stated by August Beer which states that
concentration and absorbance are directly proportional to each
other.
What is Lambert Law?
• Johann Heinrich Lambert stated Lambert law. It states that
absorbance and path length are directly proportional.
Equipments and Reagents
• Nucleic Acid: DNA or RNA samples in solution are known as
nucleic acid samples.
• UV-Visible Spectrophotometer: A device that detects the
absorbance of light at certain wavelengths.
• Cuvettes or Microvolume Plates: Containers for holding the
sample during measurement.
Procedure:
1- Sample Preparation:
 Use a blank solution (buffer only) for baseline correction and make sure
your DNA or RNA sample is dissolved in an appropriate buffer or solvent.
2- Blank Measurement:
 Put a cuvette into the spectrophotometer that is solely filled with buffer.
 Using the blank solution, set the spectrophotometer to zero absorbance.
3- Sample Measurement:
 Pipette a tiny volume of your DNA or RNA sample into a cuvette or
Microvolume plate (usually 1-2 μL for microvolume instruments, 200-1000
μL for normal cuvettes).
 Insert the microvolume plate or cuvette into the spectrophotometer.
4- Wavelength Selection:
 Measure absorbance at 260 nm (A260) for DNA.
 Measure the absorbance of RNA at 260nm.
5- Absorbance Reading:
 After selecting the wavelengths, note the absorbance values.
6- Calculation of Concentration:
 Using the Beer-Lambert Law, determine the concentration of DNA or RNA
based on the absorbance values:
 For DNA: Concentration (ng/μL)=A260×Dilution Factor×50
 For RNA: Concentration (ng/μL)=A260×Dilution Factor×40
 Any dilution or concentration phases in the sample preparation process are
taken into account by the dilution factor.
7- Purity Assessment:
 Assess the purity of DNA or RNA by determining the A260/A280 ratio. A
pure sample usually has an RNA to DNA ratio of about 2.0 and a DNA
ratio of about 1.8.
 Note:
 While the absorbance at 280 nm indicates the presence of proteins, the
absorbance at 260 nm is specific to nucleic acids and is utilized for
measurement.
 Verify the path length of the spectrophotometer, which is typically 1 cm for
cuvettes, and modify computations as necessary.
 Make that the cuvettes or microvolume plates are clean and that the
spectrophotometer is calibrated correctly.
 Contaminants may cause RNA samples to absorb more light at 230 nm.
You can measure A230 to determine purity if necessary.
 Microvolume measurements are frequently performed using nanodrop
spectrophotometers, which enable small sample volumes and minimize
sample consumption.

DNA & RNA Quantification by Spectrophotometer.pptx

  • 1.
  • 2.
  • 3.
    Introduction • A firststep in many molecular biology investigations is quantifying the quantity of DNA and RNA. • An approach that is frequently used to measure nucleic acid concentrations is UV-visible Spectrophotometry. • Here's a basic rundown of how a spectrophotometer can be used to measure DNA and RNA:
  • 4.
    What is Beer’sLaw? • Beer’s law was stated by August Beer which states that concentration and absorbance are directly proportional to each other. What is Lambert Law? • Johann Heinrich Lambert stated Lambert law. It states that absorbance and path length are directly proportional.
  • 5.
    Equipments and Reagents •Nucleic Acid: DNA or RNA samples in solution are known as nucleic acid samples. • UV-Visible Spectrophotometer: A device that detects the absorbance of light at certain wavelengths. • Cuvettes or Microvolume Plates: Containers for holding the sample during measurement.
  • 6.
    Procedure: 1- Sample Preparation: Use a blank solution (buffer only) for baseline correction and make sure your DNA or RNA sample is dissolved in an appropriate buffer or solvent. 2- Blank Measurement:  Put a cuvette into the spectrophotometer that is solely filled with buffer.  Using the blank solution, set the spectrophotometer to zero absorbance. 3- Sample Measurement:  Pipette a tiny volume of your DNA or RNA sample into a cuvette or Microvolume plate (usually 1-2 μL for microvolume instruments, 200-1000 μL for normal cuvettes).  Insert the microvolume plate or cuvette into the spectrophotometer.
  • 7.
    4- Wavelength Selection: Measure absorbance at 260 nm (A260) for DNA.  Measure the absorbance of RNA at 260nm. 5- Absorbance Reading:  After selecting the wavelengths, note the absorbance values. 6- Calculation of Concentration:  Using the Beer-Lambert Law, determine the concentration of DNA or RNA based on the absorbance values:  For DNA: Concentration (ng/μL)=A260×Dilution Factor×50  For RNA: Concentration (ng/μL)=A260×Dilution Factor×40  Any dilution or concentration phases in the sample preparation process are taken into account by the dilution factor.
  • 8.
    7- Purity Assessment: Assess the purity of DNA or RNA by determining the A260/A280 ratio. A pure sample usually has an RNA to DNA ratio of about 2.0 and a DNA ratio of about 1.8.  Note:  While the absorbance at 280 nm indicates the presence of proteins, the absorbance at 260 nm is specific to nucleic acids and is utilized for measurement.  Verify the path length of the spectrophotometer, which is typically 1 cm for cuvettes, and modify computations as necessary.  Make that the cuvettes or microvolume plates are clean and that the spectrophotometer is calibrated correctly.
  • 9.
     Contaminants maycause RNA samples to absorb more light at 230 nm. You can measure A230 to determine purity if necessary.  Microvolume measurements are frequently performed using nanodrop spectrophotometers, which enable small sample volumes and minimize sample consumption.