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Next Generation Sequencing
Clinical Examples 2.0In this tutorial we’re going to briefly go through some of the Clinical applications of Next Generation Sequencing and how it can be useful in determining inheritance patterns, distinguishing diagnosis between patients, and assessing the risks of an illness reoccurring.
Cancer
• Bladder Cancer
– T1NP: T1 non progressive cancer
• Patient may have multiple recurrences of the disease without
developing muscle-invasive tumors
– T1P: T1 progressive cancer
• Patient’s disease develops into muscle invasive tumors and
becomes metastatic.
• Once metastatic, cancer survival is around 5.4% at 5 years
Works Cited
DeFrancesco, Chris. "News Release." Partnership to Deliver Gains in Medical, Dental
Research. N.p., 28 Sept. 2009. Web. 30 June 2014.
<http://today.uchc.edu/newsreleases/2009/sep09/partnership.html>.
Gonzalez, Kelly. "Making Sense of NextGen Sequencing." Ambry Genetics. N.p., n.d.
Web. 27 May 2014.
<http://www.ambrygen.com/sites/default/files/pdfs/NERRG_4-10-
12_Making_Sense_of_NetGen_Sequencing_KG(3).pdf>.
Schug, Jonathan. "Next Generation Sequencing Core." Next Generation Sequencing.
N.p., n.d. Web. 30 June 2014.
<http://www.med.upenn.edu/cores/NextGenerationSequencingCore.shtml>.
"University of Wisconsin–Madison Biotechnology Center." UWBC DNA Sequencing
Facility. N.p., n.d. Web. 30 June 2014.
<http://www.biotech.wisc.edu/services/dnaseq>.

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Clinical Application 2.0

  • 1. Next Generation Sequencing Clinical Examples 2.0In this tutorial we’re going to briefly go through some of the Clinical applications of Next Generation Sequencing and how it can be useful in determining inheritance patterns, distinguishing diagnosis between patients, and assessing the risks of an illness reoccurring.
  • 2.
  • 3.
  • 4. Cancer • Bladder Cancer – T1NP: T1 non progressive cancer • Patient may have multiple recurrences of the disease without developing muscle-invasive tumors – T1P: T1 progressive cancer • Patient’s disease develops into muscle invasive tumors and becomes metastatic. • Once metastatic, cancer survival is around 5.4% at 5 years
  • 5. Works Cited DeFrancesco, Chris. "News Release." Partnership to Deliver Gains in Medical, Dental Research. N.p., 28 Sept. 2009. Web. 30 June 2014. <http://today.uchc.edu/newsreleases/2009/sep09/partnership.html>. Gonzalez, Kelly. "Making Sense of NextGen Sequencing." Ambry Genetics. N.p., n.d. Web. 27 May 2014. <http://www.ambrygen.com/sites/default/files/pdfs/NERRG_4-10- 12_Making_Sense_of_NetGen_Sequencing_KG(3).pdf>. Schug, Jonathan. "Next Generation Sequencing Core." Next Generation Sequencing. N.p., n.d. Web. 30 June 2014. <http://www.med.upenn.edu/cores/NextGenerationSequencingCore.shtml>. "University of Wisconsin–Madison Biotechnology Center." UWBC DNA Sequencing Facility. N.p., n.d. Web. 30 June 2014. <http://www.biotech.wisc.edu/services/dnaseq>.

Editor's Notes

  1. In this tutorial we’re going to briefly go through some of the Clinical applications of Next Generation Sequencing and how it can be useful in determining inheritance patterns, distinguishing diagnosis between patients, and assessing the risks of an illness reoccurring
  2. Works Cited: accessed May 22 2014 http://srxa.files.wordpress.com/2013/10/neurodegenerative-disease.jpg http://srxawordonhealth.com/2013/10/ One way that RNA Seq has proven to be useful as a diagnostic tool is in diagnosing certain disorders such as neurological disorders like Schizophrenia, Alzheimer's Disease, Parkinson’s Disease, and Huntington’s Disease.
  3. Works Cited: Accessed: May 22nd http://www.ploscompbiol.org/article/fetchObject.action?uri=info:doi/10.1371/journal.pcbi.1003517.g006&representation=PNG_L Accessed: May 20th 2014 Soreq, Lilach, et al. "Long Non-Coding RNA And Alternative Splicing Modulations In Parkinson's Leukocytes Identified By RNA Sequencing." Plos Computational Biology 10.3 (2014): 1-22. Academic Search Premier. Web. 20 May 2014. Leukocyte-Expressed protein coding transcripts, as well as non-coding areas of long non coding RNAs in Parkinson’s Disease patient have been characterized by RNA-Seq which helped in detecting blood based biomarkers on WBC.