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Blue biotechnology
Technology in Color Blue!
Niranjana Menon
2016 – 11 - 109
Blue biotechnology is the application of
molecular biological methods
to marine and freshwater organisms
2
Important marine sources and research areas
3
Research area Marine source Aims
Food
Algae, invertebrates,
fishes
Development of innovative methods
To increase aquaculture production
Zero waste recirculation systems
Energy Algae
Biofuel production
Biorefineries
Health
Algae, sponge,
microorganisms
To find novel bioactives
Environment Marine organisms
Biosensing technologies for marine
environment monitors
Non-toxic antifouling technology
Industrial
products
Algae
Production of marine biopolymers for
food, cosmetics, and health
[Springer Handbook of Marine Biotechnology]
4
Tools &
diagnostics for
reproduction &
growth
Genetics, physiology,
biochemistry, ecology
Bioactive compounds-
function & mode of action
Role of Blue Biotechnology
How does it relate to industry and
agriculture?
5
Marine biotechnology securing food supply
 To satisfy the growing demand for high quality and healthy
products from fisheries and aquaculture in a sustainable way.
 Intensive aquaculture
Examples
Marine derived food additives
Marine derived nutraceutics
Marine derived E-numbers
Marine biotechnological progresses in aquaculture
6
Marine biotechnology securing alternative sources of
renewable energy
7
Examples
Production of biofuel from macroalgae
Production of oil from microalgae
Research priorities to improve microbial enhanced oil recovery
Marine biotechnology securing human health
8
Examples
Marine derived anticancer drugs
Marine derived painkillers
Marine derived antibiotics
Marine derived cosmetics
The sponge Stylissa massa produces an
unusual compound palau'amine, with
antimicrobial activity
Marine biotechnology securing industrial products
and processes
9
 GFP (Green Fluorescent Protein) from jellyfish (Aequorea
victoria) and luciferase enzyme from Vibrio fischeri have
widespread applications in molecular biology as a reporter
protein.
 Shrimp alkaline phosphatase and other marine derived
enzymes with unique heat labile properties used to simplify
molecular biology reactions like PCR and others
10
Examples
Marine derived enzymes
Marine derived biopolymers
Marine derived biomaterials
Marine biotechnology securing environmental health
11
Examples
Marine derived antifouling strategies
Marine habitat restoration
Bioremediation of marine ecosystems
Biosensing
Biostimulation
Bioaugmentation
Application of blue biotechnology
 Aquaculture
 Transgenic
 Disease Resistance
 Conservation
 Seaweeds and their Products
 Pharmaceuticals
 Enzymes
 Biomolecules
 Bioremediation
12
Aquaculture
13
 Substantial commercialization of aquaculture
 Improve:
Health
Reproduction
Development and growth
of aquatic organisms
14
Transgenic fish
15
 Production of transgenic fish  much easier than producing other
transgenic mammals
 Fish produce a large number of eggs  can generate large quantities of
genetically uniform material for experimentation
 Atlantic salmon (Salmo salar)  500,015,000 eggs
 Common carp (Cyprinus carpio)  1, 00,000 eggs
 First successful case of transgenic fish was reported by Zhu et al.,
1985 - microinjected the human GH gene into the fertilized eggs of
goldfish (Carassius auratus L.)
 Followed by successful introduction of human GH gene into the
genome of the loach (Misgurnus anguillicaudatus) with resulting
transgenic fish that grew 3 to 4.6 times faster than the control within
the first 135 d (Zhu et al.,1986).
16
Chinook salmonOcean pout
AquAdvantage salmon
17
18
 A patented brand of genetically modified (GM) fluorescent
Zebra fish (Danio rerio) with bright red, green, and orange
fluorescent colors
 GloFish TM are available in six striking colors:
Starfire Red®
Cosmic Blue®
Electric Green®
Galactic Purple®
Sunburst Orange®
Moonrise Pink®
GloFish™
19
Transgenic Growth-Enhanced Tilapia
20
Transgenic Growth-Enhanced Loach
21
Current and potential applications of transgenic fish
 Growth enhancement
 Freeze resistance and cold tolerance
 Salinity tolerance
 Disease resistance
 Metabolic modification
 Improved product for the consumer
 Fishpharming production of pharmacological proteins
22
Disease Resistance
23
 A major limitation - outbreak of disease - farmed fish are
generally cultured at high densities and under stress -
bacterial infection (Hew et al.,1995).
 Example catfish industry - Channel catfish (Ictalurus
punctatus)
 Antibiotics -- limited number have been approved for use
in aquaculture
 Introduction of disease resistance genes from wild spp. or
other sources
Conservation
24
 United Nations Convention on the Law of the Sea
(UNCLOS)
25
Molecular tools can be used to identify and characterize important
aquatic germplasm including many endangered species. These
tools have made it possible to analyze the genomes of many
aquatic species. They have also helped us understand the
molecular basis of gene regulation, expression and sex
determination. This can improve the methodologies for defining
species, stocks and populations.
Such molecular approaches include:
 Developing marker-assisted selection technologies
 Improving precision and efficiency of transgenic techniques
 DNA fingerprinting to know polymorphism in fish stocks
 Improving technologies for cryopreservation of gametes and
embryos
Seaweeds and their products
26
 Nutraceuticals (food)
 Biodiesel
 Stabalizing agents - Chondrus crispus
 Bioremediation - Cr, Ni, Cu, Zn, Pb
 Pollution indicator
 Production of Hydrogen -
Chlamydomonas reinhardtii
 Single cell protein
Tofu - Japanese cuisine
Gel electrophoresis
SCP - Chlorella
Fuels from algae
27
 Renewable and no damage to the environment.
 Biomass can be converted by bacteria to fuels such as methane.
 Dunaliella is an alga that can produce glycerol, which can be
converted by bacteria to chemicals such as ethanol and
butanol, which can be used as fuels.
 Algae may also be genetically modified to make gasoline-type
fuels.
Algal food products
 Microalgae (green algae and cyanobacteria): mostly as food,
but also used as pigment sources such as β-carotene.
 Algae such as Spirulina and Chlorella are of much nutritional
value.
 Spirulina is marketed today as dried flakes that are used in
fish food and Japanese food.
 Spirulina – SCP, capsules for space researchers
 Phycobiliproteins are pigments involved in algal
photosynthesis, and can be used as phycofluors, which can
label biological molecules.
ICAR - CMFRI patented products and techniques
29
Shore pearl culture
technology
Green mussels
extract (GMe) for
arthritis
Hatchery technology
for clown fish
Pharmaceuticals
Research on the use of collagen from marine invertebrates
in wound healing and product development
 Taq DNA polymerase - Thermus aquaticus
 Pfu DNA polymerase - Pyrococcus furiosus
 DNA ligase - Thermococcus fumicolans
 GFP - Aequorea victoria
 Shrimp alkaline phosphatases - Pandalus borealis
31
Enzymes
Bioremediation
32
 Ananda Mohan Chakrabarty, an Indian - born scientist
working at GE in the 1960’s and 1970’s, developed the multi-
plasmid hydrocarbon - degrading Pseudomonas and
patented it in 1971.
 First time anyone had patented a living organism.
 Pseudomonas putida - degrades the hydrocarbon present in oil
spliis
Examples of market level marine - derived products
Products Source Application
Ara-A Marine sponge Antiviral
Ara-C Marine sponge Anticancer
Okadaic acid Dinoflagellate Molecular probe
Manolide Marine sponge Molecular probe
Vent TMA polymerase
Deep-sea hydrothermal
vent bacterium
PCR enzyme
Aequorin
Bioluminescent jelly
fish
Bioluminescent calcium
indicator
Green flourescent protein
Bioluminescent jelly
fish
Reporter gene
Phycoerythrin Red algae
Conjugated antibodies used
in ELISA and flow
cytometry
Cephalosporins
Cephalosporium sp.,
marine fungi
Antibiotic 33
THANK YOU
34
Marine derived food additives
35
 Antioxidants
 Polyamines such as Spermine and Spermidine
 Sulfated polysacchrides from brown algae
 Astaxanthin: pigmented antioxidant in microalgae
 Taste – adding substances
 Lipids
 Photosynthetic pigments
 Polysaccharides
 Protein
Slide 5
Marine derived nutraceutics
36
 Bioactive peptides
 Fish oils
 Fish proteins
 Seaweeds
 Macroalgae & microalgae
 Amino acids
 Omega-3 oils
 All kinds of phytochemicals
Slide 5
Marine derived E-numbers
37
 E-numbers -- code names for different kinds of substances
that are used as food additives
E 406 – Agar -- Gelidium, Pterocladia & Gracilaria.
E400 – 405 -- Alginates
E 407 -- Carrageenan
Slide 5
Marine biotechnology securing human health
38
Elysia rufescens Dolabella auricularia Trididemnum solidum
Kahalalide-F
Antitumor
Dolastatin 10
Antimitotic
Didemnin-B
Herpes simplex virus
Conus magus
Ziconotide (prialt)
Chronic pain
Slide 8
Biosensing
39
 To monitor the in situ marine environment.
 Monitoring can be:
 Analysis of the water quality
 Prediction & detection of harmful algal blooms (HAB)
 Estimation of environmental and human health risks.
 Microalgal fiber optic biosensors
 Automated online optical biosensing systems (AOBS)
 Surface plasma resonance (SPR)
 Biosensors to detect marine toxins in seafood
 Wearable electrochemical sensors
Slide 10
Marine derived antifouling strategies
40
 Biofouling -- accumulation of microorganisms, plants,
algae, or animals on wetted surfaces.
 Antifouling -- ability of specifically designed materials
and coatings to remove or prevent biofouling by any
number of organisms on wetted surfaces.
 Biocides -- chemical substances that deter the
microorganisms responsible for biofouling.
 Tributyltin moiety (TBT) and tin-based anti-fouling
coatings
Slide
Bioremediation of marine ecosystems
41
 Microorganisms transform organic contaminants in
oceans, soils, groundwater, sludge and solids, into an
energy source, cometabolizing substances with another
energy source.
 In the case of larger oil spills, residual oil can be further
broken down by biostimulation
Slide
10
Biostimulation
42
 Addition of specific nutrients, air, organic substrates or
other electron donors/acceptors, nutrients, and other
compounds that affect and normally limit treatment in their
absence.
 Microorganisms will clean the waste source more efficiently
and faster than in normal circumstances
 Examples: grease accumulation in sewers and grease traps
Slide 10
Bioaugmentation
43
 Treatment where you want to achieve a controlled, predictable
and programmed biodegradation.
 The controlled addition of specially formulated microbial cultures
that assist those found naturally in the soil.
 Done in conjunction and monitoring of an ideal growth
environment in which these selected bacteria can live and work
 Specific strains of anaerobic microorganisms have been isolated,
cultured and are commercially available for the biodegradation of
the chlorinated contaminants VC. Bio-Dechlor INOCULUM®
Plus is a widely used bioaugmentation culture designed
specifically for this purpose.
Slide 10

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Blue biotechnology

  • 1. Blue biotechnology Technology in Color Blue! Niranjana Menon 2016 – 11 - 109
  • 2. Blue biotechnology is the application of molecular biological methods to marine and freshwater organisms 2
  • 3. Important marine sources and research areas 3 Research area Marine source Aims Food Algae, invertebrates, fishes Development of innovative methods To increase aquaculture production Zero waste recirculation systems Energy Algae Biofuel production Biorefineries Health Algae, sponge, microorganisms To find novel bioactives Environment Marine organisms Biosensing technologies for marine environment monitors Non-toxic antifouling technology Industrial products Algae Production of marine biopolymers for food, cosmetics, and health [Springer Handbook of Marine Biotechnology]
  • 4. 4 Tools & diagnostics for reproduction & growth Genetics, physiology, biochemistry, ecology Bioactive compounds- function & mode of action Role of Blue Biotechnology
  • 5. How does it relate to industry and agriculture? 5
  • 6. Marine biotechnology securing food supply  To satisfy the growing demand for high quality and healthy products from fisheries and aquaculture in a sustainable way.  Intensive aquaculture Examples Marine derived food additives Marine derived nutraceutics Marine derived E-numbers Marine biotechnological progresses in aquaculture 6
  • 7. Marine biotechnology securing alternative sources of renewable energy 7 Examples Production of biofuel from macroalgae Production of oil from microalgae Research priorities to improve microbial enhanced oil recovery
  • 8. Marine biotechnology securing human health 8 Examples Marine derived anticancer drugs Marine derived painkillers Marine derived antibiotics Marine derived cosmetics The sponge Stylissa massa produces an unusual compound palau'amine, with antimicrobial activity
  • 9. Marine biotechnology securing industrial products and processes 9  GFP (Green Fluorescent Protein) from jellyfish (Aequorea victoria) and luciferase enzyme from Vibrio fischeri have widespread applications in molecular biology as a reporter protein.  Shrimp alkaline phosphatase and other marine derived enzymes with unique heat labile properties used to simplify molecular biology reactions like PCR and others
  • 10. 10 Examples Marine derived enzymes Marine derived biopolymers Marine derived biomaterials
  • 11. Marine biotechnology securing environmental health 11 Examples Marine derived antifouling strategies Marine habitat restoration Bioremediation of marine ecosystems Biosensing Biostimulation Bioaugmentation
  • 12. Application of blue biotechnology  Aquaculture  Transgenic  Disease Resistance  Conservation  Seaweeds and their Products  Pharmaceuticals  Enzymes  Biomolecules  Bioremediation 12
  • 13. Aquaculture 13  Substantial commercialization of aquaculture  Improve: Health Reproduction Development and growth of aquatic organisms
  • 14. 14
  • 15. Transgenic fish 15  Production of transgenic fish  much easier than producing other transgenic mammals  Fish produce a large number of eggs  can generate large quantities of genetically uniform material for experimentation  Atlantic salmon (Salmo salar)  500,015,000 eggs  Common carp (Cyprinus carpio)  1, 00,000 eggs  First successful case of transgenic fish was reported by Zhu et al., 1985 - microinjected the human GH gene into the fertilized eggs of goldfish (Carassius auratus L.)  Followed by successful introduction of human GH gene into the genome of the loach (Misgurnus anguillicaudatus) with resulting transgenic fish that grew 3 to 4.6 times faster than the control within the first 135 d (Zhu et al.,1986).
  • 17. 17
  • 18. 18  A patented brand of genetically modified (GM) fluorescent Zebra fish (Danio rerio) with bright red, green, and orange fluorescent colors  GloFish TM are available in six striking colors: Starfire Red® Cosmic Blue® Electric Green® Galactic Purple® Sunburst Orange® Moonrise Pink® GloFish™
  • 19. 19
  • 22. Current and potential applications of transgenic fish  Growth enhancement  Freeze resistance and cold tolerance  Salinity tolerance  Disease resistance  Metabolic modification  Improved product for the consumer  Fishpharming production of pharmacological proteins 22
  • 23. Disease Resistance 23  A major limitation - outbreak of disease - farmed fish are generally cultured at high densities and under stress - bacterial infection (Hew et al.,1995).  Example catfish industry - Channel catfish (Ictalurus punctatus)  Antibiotics -- limited number have been approved for use in aquaculture  Introduction of disease resistance genes from wild spp. or other sources
  • 24. Conservation 24  United Nations Convention on the Law of the Sea (UNCLOS)
  • 25. 25 Molecular tools can be used to identify and characterize important aquatic germplasm including many endangered species. These tools have made it possible to analyze the genomes of many aquatic species. They have also helped us understand the molecular basis of gene regulation, expression and sex determination. This can improve the methodologies for defining species, stocks and populations. Such molecular approaches include:  Developing marker-assisted selection technologies  Improving precision and efficiency of transgenic techniques  DNA fingerprinting to know polymorphism in fish stocks  Improving technologies for cryopreservation of gametes and embryos
  • 26. Seaweeds and their products 26  Nutraceuticals (food)  Biodiesel  Stabalizing agents - Chondrus crispus  Bioremediation - Cr, Ni, Cu, Zn, Pb  Pollution indicator  Production of Hydrogen - Chlamydomonas reinhardtii  Single cell protein Tofu - Japanese cuisine Gel electrophoresis SCP - Chlorella
  • 27. Fuels from algae 27  Renewable and no damage to the environment.  Biomass can be converted by bacteria to fuels such as methane.  Dunaliella is an alga that can produce glycerol, which can be converted by bacteria to chemicals such as ethanol and butanol, which can be used as fuels.  Algae may also be genetically modified to make gasoline-type fuels.
  • 28. Algal food products  Microalgae (green algae and cyanobacteria): mostly as food, but also used as pigment sources such as β-carotene.  Algae such as Spirulina and Chlorella are of much nutritional value.  Spirulina is marketed today as dried flakes that are used in fish food and Japanese food.  Spirulina – SCP, capsules for space researchers  Phycobiliproteins are pigments involved in algal photosynthesis, and can be used as phycofluors, which can label biological molecules.
  • 29. ICAR - CMFRI patented products and techniques 29 Shore pearl culture technology Green mussels extract (GMe) for arthritis Hatchery technology for clown fish Pharmaceuticals
  • 30. Research on the use of collagen from marine invertebrates in wound healing and product development
  • 31.  Taq DNA polymerase - Thermus aquaticus  Pfu DNA polymerase - Pyrococcus furiosus  DNA ligase - Thermococcus fumicolans  GFP - Aequorea victoria  Shrimp alkaline phosphatases - Pandalus borealis 31 Enzymes
  • 32. Bioremediation 32  Ananda Mohan Chakrabarty, an Indian - born scientist working at GE in the 1960’s and 1970’s, developed the multi- plasmid hydrocarbon - degrading Pseudomonas and patented it in 1971.  First time anyone had patented a living organism.  Pseudomonas putida - degrades the hydrocarbon present in oil spliis
  • 33. Examples of market level marine - derived products Products Source Application Ara-A Marine sponge Antiviral Ara-C Marine sponge Anticancer Okadaic acid Dinoflagellate Molecular probe Manolide Marine sponge Molecular probe Vent TMA polymerase Deep-sea hydrothermal vent bacterium PCR enzyme Aequorin Bioluminescent jelly fish Bioluminescent calcium indicator Green flourescent protein Bioluminescent jelly fish Reporter gene Phycoerythrin Red algae Conjugated antibodies used in ELISA and flow cytometry Cephalosporins Cephalosporium sp., marine fungi Antibiotic 33
  • 35. Marine derived food additives 35  Antioxidants  Polyamines such as Spermine and Spermidine  Sulfated polysacchrides from brown algae  Astaxanthin: pigmented antioxidant in microalgae  Taste – adding substances  Lipids  Photosynthetic pigments  Polysaccharides  Protein Slide 5
  • 36. Marine derived nutraceutics 36  Bioactive peptides  Fish oils  Fish proteins  Seaweeds  Macroalgae & microalgae  Amino acids  Omega-3 oils  All kinds of phytochemicals Slide 5
  • 37. Marine derived E-numbers 37  E-numbers -- code names for different kinds of substances that are used as food additives E 406 – Agar -- Gelidium, Pterocladia & Gracilaria. E400 – 405 -- Alginates E 407 -- Carrageenan Slide 5
  • 38. Marine biotechnology securing human health 38 Elysia rufescens Dolabella auricularia Trididemnum solidum Kahalalide-F Antitumor Dolastatin 10 Antimitotic Didemnin-B Herpes simplex virus Conus magus Ziconotide (prialt) Chronic pain Slide 8
  • 39. Biosensing 39  To monitor the in situ marine environment.  Monitoring can be:  Analysis of the water quality  Prediction & detection of harmful algal blooms (HAB)  Estimation of environmental and human health risks.  Microalgal fiber optic biosensors  Automated online optical biosensing systems (AOBS)  Surface plasma resonance (SPR)  Biosensors to detect marine toxins in seafood  Wearable electrochemical sensors Slide 10
  • 40. Marine derived antifouling strategies 40  Biofouling -- accumulation of microorganisms, plants, algae, or animals on wetted surfaces.  Antifouling -- ability of specifically designed materials and coatings to remove or prevent biofouling by any number of organisms on wetted surfaces.  Biocides -- chemical substances that deter the microorganisms responsible for biofouling.  Tributyltin moiety (TBT) and tin-based anti-fouling coatings Slide
  • 41. Bioremediation of marine ecosystems 41  Microorganisms transform organic contaminants in oceans, soils, groundwater, sludge and solids, into an energy source, cometabolizing substances with another energy source.  In the case of larger oil spills, residual oil can be further broken down by biostimulation Slide 10
  • 42. Biostimulation 42  Addition of specific nutrients, air, organic substrates or other electron donors/acceptors, nutrients, and other compounds that affect and normally limit treatment in their absence.  Microorganisms will clean the waste source more efficiently and faster than in normal circumstances  Examples: grease accumulation in sewers and grease traps Slide 10
  • 43. Bioaugmentation 43  Treatment where you want to achieve a controlled, predictable and programmed biodegradation.  The controlled addition of specially formulated microbial cultures that assist those found naturally in the soil.  Done in conjunction and monitoring of an ideal growth environment in which these selected bacteria can live and work  Specific strains of anaerobic microorganisms have been isolated, cultured and are commercially available for the biodegradation of the chlorinated contaminants VC. Bio-Dechlor INOCULUM® Plus is a widely used bioaugmentation culture designed specifically for this purpose. Slide 10

Editor's Notes

  1. Aliivibrio fischeri is a gram-negative, rod-shaped bacterium found globally in marine environments. A. fischeri has bioluminescent properties, and is found predominantly in symbiosis with various marine animals, such as the bobtail squid.
  2. Red algae-Porphyra (nori)-food source in Japan for 400 years. Vit. A, C, E, B1,B2, B6, B12. microalgal oil food supplemets in baby food Can remove Cu, Cr, Ni, Zn. Lead from 1-1000ppm
  3. CENTRAL MARINE FISHERIES RESEARCH INSTITUTE