This document discusses several applications of bacteria. It describes how genetically engineered Caldicellulosiruptor bescii was used to directly convert untreated switchgrass into ethanol. It also discusses how bacteria can be used in the pharmaceutical industry, such as the antibiotic teixobactin. Bacteria play important roles in food production, such as Lactobacillus species in the dairy industry. Bacteria are also used in bioremediation to remove pollutants from the environment, for example by degrading hydrocarbons from oil spills.
Microbial biotechnology is the use of microorganisms to obtain an economically valuable product or activity at a commercial or large scale.
Like any other man-made technology, microbial biotechnology has both positive and negative effects on the environment.
Biotechnology may carry more risk than other scientific fields: microbes are tiny and difficult to detect, but the dangers are potentially vast.
The use of biotechnical methods—including genetically-engineered microorganisms—is indispensable for the manufacture of many products essential to mankind.
For better or for worse, it is the mankind's task to tackle the problems that are associated with the use of this technology, and which to a high degree are located in the field of unwanted environmental impacts.
The use of biotechnology should be restricted to enhancing the quality of life for plants, animals and human beings only. Anything beyond that is unnatural and highly disastrous to us.
“Bioleaching" or "bio-oxidation" employs the use of naturally occurring bacteria, harmless to both humans and the environment, to extract of metals from their ores.
Conversion of insoluble metal sulfides into water-soluble metal sulfates.
It is mainly used to recover certain metals from sulfide ores. This is much cleaner than the traditional leaching.
Microbial biotechnology is the use of microorganisms to obtain an economically valuable product or activity at a commercial or large scale.
Like any other man-made technology, microbial biotechnology has both positive and negative effects on the environment.
Biotechnology may carry more risk than other scientific fields: microbes are tiny and difficult to detect, but the dangers are potentially vast.
The use of biotechnical methods—including genetically-engineered microorganisms—is indispensable for the manufacture of many products essential to mankind.
For better or for worse, it is the mankind's task to tackle the problems that are associated with the use of this technology, and which to a high degree are located in the field of unwanted environmental impacts.
The use of biotechnology should be restricted to enhancing the quality of life for plants, animals and human beings only. Anything beyond that is unnatural and highly disastrous to us.
“Bioleaching" or "bio-oxidation" employs the use of naturally occurring bacteria, harmless to both humans and the environment, to extract of metals from their ores.
Conversion of insoluble metal sulfides into water-soluble metal sulfates.
It is mainly used to recover certain metals from sulfide ores. This is much cleaner than the traditional leaching.
Bacteriophage vectors
Bacteriophage
WHY BACTERIOPHAGE AS A VECTOR?
M13 phage
Genome of m13 phage
Life cycle and dna replication of m13
CONSTRUCTION M13 AS PHAGE VECTOR
M13 MP 2 vector
M13MP7 VECTOR
Selection of recombinants
Lambda replacement vectors
LAMBDA EMBL 4 VECTOR
P1 PHAGE
GENOME OF P1 PHAGE
P1 PHAGE AS VECTOR
P1 phage vector system
Role of bacteria in Industry and MedicineRitaSomPaul
It describes positive and negative roles of bacteria in Industry and Medicine. It is a part of Microbiology syllabus in Botany (Hons) as per CBCS system
Bergey's Manual and it's classification. A brief concised presentation prepared for taking seminar and classes.
Volume II (Edition 2) described more in detail.
“Microbes matters”. Cooperation among bacteria. Good microbes. Microbes too helps us in various ways. List of uses of microbes. The reason behind tasty foods. Microbes are useful in food production and food industries. “Fermentation may have been greater discovery than fires”. Fermentation – the main job of microbes. Brewing beer, liquors and wine. The need of microbes in agriculture. It helps in encountering of insects. Microorganisms are an important part of wastewater treatment. Contribution to medicine - thousands of antibiotics known to us are made by microorganisms. The best kind of biodegradable plastics are the ones made by bacteria because they can also be broken down by bacteria. It also helps to set up your aquarium. The complex microbial communities on and in the human body can sometimes get out of balance – Maintaining of balance. Microorganisms have evolved as a potential alternate source of energy. Microorganisms are used to produce biofuels like biodiesel, bioalcohol and also microbial fuel cell. We are all here because of an organism that changed the world and also paved the way for complex life on earth – Evolution. Microorganisms help us in researching on diseases, such as in vaccination. We conclude with the a considerations of the consequences of the these complex interactions and we briefly discuss the potential role of social interactions involving multiple traits and multiple environment constraints in the evolution of specialization and division of microbes.
Lignocelluloses, the major component of biomass, makes up about half of the matter produced by photosynthesis. It consists of three types of polymers – cellulose, hemicellulose, and lignin – that are strongly intermeshed and chemically bonded by non-covalent forces and by covalent cross-linkages. A great variety of fungi and bacteria can fragment these macromolecules by using a battery of hydrolytic or oxidative enzymes. In native substrates, binding of the polymers hinders their biodegradation. Molecular genetics of cellulose-, hemicellulose- and lignin-degrading systems advanced considerably during the 1990s. Most of the enzymes have been cloned, sequenced, and expressed both in homologous and in heterologous hosts. Much is known about the structure, genomic organization, and regulation of the genes encoding these proteins.
Bacteriophage vectors
Bacteriophage
WHY BACTERIOPHAGE AS A VECTOR?
M13 phage
Genome of m13 phage
Life cycle and dna replication of m13
CONSTRUCTION M13 AS PHAGE VECTOR
M13 MP 2 vector
M13MP7 VECTOR
Selection of recombinants
Lambda replacement vectors
LAMBDA EMBL 4 VECTOR
P1 PHAGE
GENOME OF P1 PHAGE
P1 PHAGE AS VECTOR
P1 phage vector system
Role of bacteria in Industry and MedicineRitaSomPaul
It describes positive and negative roles of bacteria in Industry and Medicine. It is a part of Microbiology syllabus in Botany (Hons) as per CBCS system
Bergey's Manual and it's classification. A brief concised presentation prepared for taking seminar and classes.
Volume II (Edition 2) described more in detail.
“Microbes matters”. Cooperation among bacteria. Good microbes. Microbes too helps us in various ways. List of uses of microbes. The reason behind tasty foods. Microbes are useful in food production and food industries. “Fermentation may have been greater discovery than fires”. Fermentation – the main job of microbes. Brewing beer, liquors and wine. The need of microbes in agriculture. It helps in encountering of insects. Microorganisms are an important part of wastewater treatment. Contribution to medicine - thousands of antibiotics known to us are made by microorganisms. The best kind of biodegradable plastics are the ones made by bacteria because they can also be broken down by bacteria. It also helps to set up your aquarium. The complex microbial communities on and in the human body can sometimes get out of balance – Maintaining of balance. Microorganisms have evolved as a potential alternate source of energy. Microorganisms are used to produce biofuels like biodiesel, bioalcohol and also microbial fuel cell. We are all here because of an organism that changed the world and also paved the way for complex life on earth – Evolution. Microorganisms help us in researching on diseases, such as in vaccination. We conclude with the a considerations of the consequences of the these complex interactions and we briefly discuss the potential role of social interactions involving multiple traits and multiple environment constraints in the evolution of specialization and division of microbes.
Lignocelluloses, the major component of biomass, makes up about half of the matter produced by photosynthesis. It consists of three types of polymers – cellulose, hemicellulose, and lignin – that are strongly intermeshed and chemically bonded by non-covalent forces and by covalent cross-linkages. A great variety of fungi and bacteria can fragment these macromolecules by using a battery of hydrolytic or oxidative enzymes. In native substrates, binding of the polymers hinders their biodegradation. Molecular genetics of cellulose-, hemicellulose- and lignin-degrading systems advanced considerably during the 1990s. Most of the enzymes have been cloned, sequenced, and expressed both in homologous and in heterologous hosts. Much is known about the structure, genomic organization, and regulation of the genes encoding these proteins.
BOTECHNOLOGY IS CHALLENGING SUBJECT TO TEACH AND UNDERSTAND ALSO .....THEIR INTERESTING PART IS TO LEARN ABOUT MICROBIAL BIO TRANSFORMATION WITH BIOCHEMICAL REACTIONS
Bacteria are described in two ways:
Bergey’s Manual of Determinative Bacteriology.
Bergey’s Manual of Systematic Bacteriology.
The bacterial classification is based on 16S RNA sequences
Carl Woese, Oganizes the Domain Bacteria into 18 phyla
Bacterial phyla used in industrial microbiology and biotechnology
International Journal of Engineering Inventions (IJEI) provides a multidisciplinary passage for researchers, managers, professionals, practitioners and students around the globe to publish high quality, peer-reviewed articles on all theoretical and empirical aspects of Engineering and Science.
here i have been given the detailed presentation on control of environmental pollution by using biotechnology/biologically, when i was studying Ph.D(Aquaculture) in Mangalore Fisheries College for 2 months!!!!!!
now i am doing Ph.D in Extension Dept. in Kolkata. I had my P.G in Extension only.
here i have been given the detailed presentation on control of environmental pollution by using biotechnology/biologically, when i was studying Ph.D(Aquaculture) in Mangalore Fisheries College for 2 months!!!!!!
now i am doing Ph.D in Extension Dept. in Kolkata. I had my P.G in Extension only.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
3. Grass to fuel conversion by genetically
engineered
Caldicellulosiruptor bescii
The thermophilic anaerobic C. bescii was first isolated in
1990 from a geothermally heated freshwater pool in
Russia and has since been found in similar environments
in other parts of the world.
4. a bacterium that can convert plant matter into
sugars, and added genes from another anaerobic
bacterium, Clostridium thermocellum, that can
convert the sugars into ethanol.
also genes for lactate dehydrogenase (an enzyme),
which produces lactate from glucose instead of the
desired ethanol product, and other enzymes, to cut
down on the amount of acetate produced in the end
product are added.
5. the direct conversion of untreated switchgrass, a non-
food renewable feedstock, to ethanol are successfully
demonstrated.
The end fermented fuel was 70% ethanol with 38% less
acetate compared to what would have been produced
with the wild-type C. bescii.
represents a new paradigm for consolidated
bioprocessing, offering the potential for carbon neutral,
cost-effective, sustainable fuel production
6. the applications of bacteria in the
pharmaceutical field
Teixobactin was isolated from a newly identified gram
positive bacteria.
can kill species including methicillin-resistant
Staphylococcus aureus (MRSA) and Mycobacterium
tuberculosis.
Moreover, the researchers have not yet found any
bacteria that are resistant to the antibiotic.
10. The role of bacteria in the
genetically modifying of plants
11.
12. Bacteria in food production
The most important bacteria in food manufacturing
are Lactobacillus species, also referred to as lactic
bacteria.
Some applications of bacteria in food:
Dairy industry
Meat industry, Lactic bacteria develop the flavor and
color of the products.
Wine industry, lactic bacteria convert the unstable malic
acid that is naturally present in wine into the stable lactic
acid. This gives the stability that is characteristic of high-
quality wines that improve on storage.
13. The role of bacteria in bioremediation
Microbial bioremediation is the use of prokaryotes (or
microbial metabolism) to remove pollutants.
Bioremediation has been used to remove agricultural
chemicals (pesticides, fertilizers) that leach from soil into
groundwater and the subsurface.
Certain toxic metals and oxides, such as selenium and
arsenic compounds, can also be removed from water by
bioremediation.
14. mercury is used in industry and is also a by-product of
certain processes, such as battery production.
Methyl mercury is usually present in very low
concentrations in natural environments, but it is highly
toxic because it accumulates in living tissues.
Several species of bacteria can carry out the
biotransformation of toxic mercury into nontoxic forms
such as Pseudomonas aeruginosa, can convert Hg+2
into elemental Hg0, which is nontoxic to humans.
15. Bioremediation is also used to clean up the regions in
which oil leaching has been detected.
bioremediation is promoted by the addition of inorganic
nutrients that help bacteria to grow.
Hydrocarbon-degrading bacteria feed on hydrocarbons
in the oil droplet, breaking down the hydrocarbons.
Some species, such as Alcanivorax borkumensis, produce
surfactants that solubilize the oil, whereas other bacteria
degrade the oil into carbon dioxide.