Metabolomics & Lipidomics: From Discovery to Routine ApplicationsWaters Corporation
Presenter: Giuseppe Astarita, Ph.D., Principal Scientist, Waters Corp, Adjunct Professor, Georgetown University
A number of technological advancements have enhanced our ability to conduct metabolomics and lipidomics experiments. State-of-the-art chromatography, ionization sources, and MS technology combined with powerful informatics solutions provide a comprehensive set of tools to analyze complex mixtures of lipids and polar metabolites in biological samples. In this presentation, I will illustrate current workflows for metabolomics & lipidomics, including untargeted and targeted approaches, for discovery and routine applications.
This presentation was given at the 11th International Conference of the Metabolomics Society (Metabolomics 2015, #metsoc2015 on Twitter), June 29, 2015, in San Francisco.
Comprehensive Investigation of the Utilization of SFC/ESI Positive Mode MS fo...Waters Corporation
This document discusses the use of single column convergence chromatography/mass spectrometry (UPC2/MS) for bioanalytical studies. It provides examples of how UPC2/MS can simplify workflows by reducing sample preparation times through direct injection of extracts and improving selectivity over reversed phase chromatography. UPC2/MS also allows for faster separation of challenging compound classes like isomers and lipids compared to traditional techniques like gas chromatography. The document concludes that UPC2/MS provides an orthogonal separation method and combines multiple techniques into one analytical platform for streamlining quantitative bioanalysis in drug discovery and development.
Exploring the Versatility of Micro-flow Technology – From Peptide Biomarkers ...Waters Corporation
Presenter: Corey D. Broeckling, Ph.D., Associate Director, Proteomics and Metabolomics Facility, Joint Assistant Professor, Colorado State University
Microfluidic technology offers multiple advantages including ease of use, robustness and sensitivity. Coupled with a tandem quadrupole mass spectrometer (such as the Xevo TQ-S) we can create an optimal and versatile “middle ground” platform in which these advantages can be exploited for both small molecule and peptide quantitative applications. For example, most small molecule applications are performed using standard flow chromatography (in the range of 600-100 L/min) consuming a high level of both solvent and sample which increases the cost (both fiscally and environmentally). The use of microfluidic technology for these small molecule applications can reduce solvent consumption by upwards of 150-fold and can significantly increase on-column sensitivity, thus reducing sample consumption. Conversely, quantitative peptide assays are almost exclusively performed using nanoscale chromatography (~400 nL/min) to achieve the required sensitivity for detection of these low abundance molecules within a complex matrix (e.g. serum, urine, etc.). We have found that the use of microfluidic technology for peptide quantitation yields the same or better sensitivity when compared to a nanoscale platform and has the additional, very significant advantages of ease of use, robustness, and improved chromatographic resolution (e.g. peak capacity). Thus, with a single analytical platform we can perform quantitative analysis for a wide range of compounds spanning from lipids/metabolites to peptides. One application in which the technology has struggled is the analysis of compounds in negative ionization mode. This limitation has been overcome in the development of a next generation microfluidic device that incorporates post-column addition of isopropanol to improve ionization and spray stability in negative mode applications. With this new capability we can now perform quantitative experiments in negative mode or with polarity switching.
This presentation was given at the 11th International Conference of the Metabolomics Society (Metabolomics 2015, #metsoc2015 on Twitter), June 29, 2015, in San Francisco.
This document summarizes a new method for detecting human hormones in drinking water supplies using solid-phase extraction and liquid chromatography-mass spectrometry. The method monitors 9 hormones including estrogens and androgens. Hormones are extracted from water samples using SPE cartridges, separated via HPLC, and identified/quantified on a triple quadrupole mass spectrometer. Recoveries for the hormones from drinking water ranged from 90-124%, and the method provides well-differentiated mass spectrometry peaks for each hormone. The new method complies with EPA Method 539 for monitoring hormones in drinking water supplies.
The Wonderful World of Scanning Electrochemical Microscopy (SECM)InsideScientific
This document summarizes a presentation given by Dr. Janine Mauzeroll on scanning electrochemical microscopy (SECM). SECM is introduced, including operating modes and principles. Applications of SECM in studying multdrug resistance in cancer cells, electrochemical properties of battery materials, and corrosion of alloys are discussed. SECM allows visualization of heterogeneous electron transfer kinetics and mass transport at micro and nanoscale.
High-throughput capillary-flow LC-MS proteomics with maximum MS utilisationAlexander Boichenko
The slide deck that describes a set of high-throughput low-flow LCMS applications and setups using Thermo Scientific UltiMate 3000 RSLCnano system, Q Exactive HF-X mass spectrometer, and EASY-Spray or linear Acclaim PepMap columns. We explain the improvements of ESI MS signal while the flow rate is reduced and address the most important topics for nano- and capillary-flow LCMS applications: robustness, sensitivity, throughput. Additionally to optimizing methods for standard pre-concentration (onto-trap) injection setup we also showcase a novel tandem capillary-flow LCMS setup the is easy-to-use and allows to achieve near 100% MS utilization of MS time.
Field portable GC/MS - Technology and applicationsIS-X
The TRIDION-9 is the world's smallest person portable GC-MS, which is fast, reliable, and easy to use. The integrated system features a low thermal mass capillary gas chromatograph with high-speed temperature programming and a miniaturized toroidal ion trap mass spectrometer (TMS). Samples are injected using a novel CUSTODION solid phase microextraction (SPME) fiber syringe or a needle trap (CUSTODION-NT).
The entire TRIDION-9 GC-MS system is totally self-contained, weighs -32 pounds, and is rechargeable battery operated. It is easy to operate with a color touch screen user interface or a simple three button navigation.
The TRIDION-9 GC-MS is ideal for rapid screening of chemicals including environmental volatiles and semivolatiles (VOCs/SVOCs), explosives, chemical warfare agents, hazardous substances and for use in food safety and industrial applications.
Metabolomics & Lipidomics: From Discovery to Routine ApplicationsWaters Corporation
Presenter: Giuseppe Astarita, Ph.D., Principal Scientist, Waters Corp, Adjunct Professor, Georgetown University
A number of technological advancements have enhanced our ability to conduct metabolomics and lipidomics experiments. State-of-the-art chromatography, ionization sources, and MS technology combined with powerful informatics solutions provide a comprehensive set of tools to analyze complex mixtures of lipids and polar metabolites in biological samples. In this presentation, I will illustrate current workflows for metabolomics & lipidomics, including untargeted and targeted approaches, for discovery and routine applications.
This presentation was given at the 11th International Conference of the Metabolomics Society (Metabolomics 2015, #metsoc2015 on Twitter), June 29, 2015, in San Francisco.
Comprehensive Investigation of the Utilization of SFC/ESI Positive Mode MS fo...Waters Corporation
This document discusses the use of single column convergence chromatography/mass spectrometry (UPC2/MS) for bioanalytical studies. It provides examples of how UPC2/MS can simplify workflows by reducing sample preparation times through direct injection of extracts and improving selectivity over reversed phase chromatography. UPC2/MS also allows for faster separation of challenging compound classes like isomers and lipids compared to traditional techniques like gas chromatography. The document concludes that UPC2/MS provides an orthogonal separation method and combines multiple techniques into one analytical platform for streamlining quantitative bioanalysis in drug discovery and development.
Exploring the Versatility of Micro-flow Technology – From Peptide Biomarkers ...Waters Corporation
Presenter: Corey D. Broeckling, Ph.D., Associate Director, Proteomics and Metabolomics Facility, Joint Assistant Professor, Colorado State University
Microfluidic technology offers multiple advantages including ease of use, robustness and sensitivity. Coupled with a tandem quadrupole mass spectrometer (such as the Xevo TQ-S) we can create an optimal and versatile “middle ground” platform in which these advantages can be exploited for both small molecule and peptide quantitative applications. For example, most small molecule applications are performed using standard flow chromatography (in the range of 600-100 L/min) consuming a high level of both solvent and sample which increases the cost (both fiscally and environmentally). The use of microfluidic technology for these small molecule applications can reduce solvent consumption by upwards of 150-fold and can significantly increase on-column sensitivity, thus reducing sample consumption. Conversely, quantitative peptide assays are almost exclusively performed using nanoscale chromatography (~400 nL/min) to achieve the required sensitivity for detection of these low abundance molecules within a complex matrix (e.g. serum, urine, etc.). We have found that the use of microfluidic technology for peptide quantitation yields the same or better sensitivity when compared to a nanoscale platform and has the additional, very significant advantages of ease of use, robustness, and improved chromatographic resolution (e.g. peak capacity). Thus, with a single analytical platform we can perform quantitative analysis for a wide range of compounds spanning from lipids/metabolites to peptides. One application in which the technology has struggled is the analysis of compounds in negative ionization mode. This limitation has been overcome in the development of a next generation microfluidic device that incorporates post-column addition of isopropanol to improve ionization and spray stability in negative mode applications. With this new capability we can now perform quantitative experiments in negative mode or with polarity switching.
This presentation was given at the 11th International Conference of the Metabolomics Society (Metabolomics 2015, #metsoc2015 on Twitter), June 29, 2015, in San Francisco.
This document summarizes a new method for detecting human hormones in drinking water supplies using solid-phase extraction and liquid chromatography-mass spectrometry. The method monitors 9 hormones including estrogens and androgens. Hormones are extracted from water samples using SPE cartridges, separated via HPLC, and identified/quantified on a triple quadrupole mass spectrometer. Recoveries for the hormones from drinking water ranged from 90-124%, and the method provides well-differentiated mass spectrometry peaks for each hormone. The new method complies with EPA Method 539 for monitoring hormones in drinking water supplies.
The Wonderful World of Scanning Electrochemical Microscopy (SECM)InsideScientific
This document summarizes a presentation given by Dr. Janine Mauzeroll on scanning electrochemical microscopy (SECM). SECM is introduced, including operating modes and principles. Applications of SECM in studying multdrug resistance in cancer cells, electrochemical properties of battery materials, and corrosion of alloys are discussed. SECM allows visualization of heterogeneous electron transfer kinetics and mass transport at micro and nanoscale.
High-throughput capillary-flow LC-MS proteomics with maximum MS utilisationAlexander Boichenko
The slide deck that describes a set of high-throughput low-flow LCMS applications and setups using Thermo Scientific UltiMate 3000 RSLCnano system, Q Exactive HF-X mass spectrometer, and EASY-Spray or linear Acclaim PepMap columns. We explain the improvements of ESI MS signal while the flow rate is reduced and address the most important topics for nano- and capillary-flow LCMS applications: robustness, sensitivity, throughput. Additionally to optimizing methods for standard pre-concentration (onto-trap) injection setup we also showcase a novel tandem capillary-flow LCMS setup the is easy-to-use and allows to achieve near 100% MS utilization of MS time.
Field portable GC/MS - Technology and applicationsIS-X
The TRIDION-9 is the world's smallest person portable GC-MS, which is fast, reliable, and easy to use. The integrated system features a low thermal mass capillary gas chromatograph with high-speed temperature programming and a miniaturized toroidal ion trap mass spectrometer (TMS). Samples are injected using a novel CUSTODION solid phase microextraction (SPME) fiber syringe or a needle trap (CUSTODION-NT).
The entire TRIDION-9 GC-MS system is totally self-contained, weighs -32 pounds, and is rechargeable battery operated. It is easy to operate with a color touch screen user interface or a simple three button navigation.
The TRIDION-9 GC-MS is ideal for rapid screening of chemicals including environmental volatiles and semivolatiles (VOCs/SVOCs), explosives, chemical warfare agents, hazardous substances and for use in food safety and industrial applications.
Protein Thermal Shift™ Solution Using Applied Biosystems Real-Time PCR SystemsThermo Fisher Scientific
Life Technologies Product Manager for Real-time PCR Systems, Levente Egry, provides an overview of Protein Thermal Shift™ technology, products and applications at the PepTalk 2012 in San Diego, California.
To learn more about the solutions in this presentation, visit: www.appliedbiosystems.com/proteinmelt
Air Monitoring Applications of Selected Ion Flow Tube MS (SIFT-MS)IS-X
Selected Ion Flow Tube MS (SIFT-MS) is a powerful technique that permits ultra-sensitive analysis of organic and inorganic components in air. The application of three independent precursor ions and knowledge of reaction schemes and reactions kinetics allows quantification in real-time.
1. The document describes two applications of extractive electrospray ionization tandem mass spectrometry (EESI-MS/MS).
2. The first application is the direct quantification of creatinine in urine samples. Creatinine-d3 was used as an internal standard to quantify creatinine levels with high accuracy and precision in less than 0.3 minutes.
3. The second application is the rapid detection of trace levels of lead in various water-based samples without any sample pretreatment. Semi-quantitative analysis of lead was performed with good linearity and recovery rates between 1-100 ppt.
EPA Method 200.7, Trace Elements in Water, Solids, and Biosolids by Inductively Coupled Plasma-Atomic Emission Spectrometry, describes the procedure and requirements for multi-element determinations by ICP-AES. This presentation demonstrates the capability of the ICPE-9820, with the ASC-9800 Auto-sampler and the Standard Addition Kit, to produce quick, accurate results that comply with the method.
Selected ion flow tube MS - Online quantitative VOC analysisIS-X
SIFT-MS accurately identifies and quantifies volatile compounds. The analysis occurs through a process of chemical ionization in a flow tube.
To analyze volatile compounds, a sample is introduced into the flow tube at a precisely controlled rate. Inside the flow tube reagent ions react with volatile compounds present in the sample. This reaction forms product ions, which are analyzed by a quadrupole mass spectrometer and particle multiplier. The result is spectra, which instantly identify and quantify volatile compounds.
Analysis is performed by a Voice Series instrument, which can be based in a laboratory, on a production line, or in a vehicle. Results can be automatically exported to other systems, such as production line controllers.
We provide turnkey solutions, or you can create your own analysis suites and protocols, including how results are processed and presented.
This study examined how calsequestrin (Casq2) regulates the activity of RyR2 calcium release channels in dog heart muscle. Experiments showed that Casq2 acts as a luminal calcium sensor in the sarcoplasmic reticulum, controlling RyR2 open probability based on luminal calcium levels. Specifically, the study found that 1) Casq2 binds terbium, which can be displaced by calcium or magnesium, 2) luminal terbium or magnesium increases RyR2 open probability similarly to luminal calcium, and 3) magnesium competes with calcium for binding on Casq2. These results support the conclusion that Casq2 acts as a luminal divalent cation sensor that modulates RyR2 gating
Bottom-up workflows have been a staple of mass spectrometry based proteomic approaches. We present in this work a fully automated solution for MALDI-TOF MS based peptide mapping experiments.
A Novel Method For Production of Cr-51_INISmohamed aydia
The document describes a novel method for producing Cr-51 using two different ion exchange separation techniques. The first technique uses triton X-100 cerium(IV)phosphate (TX-100CeP) as an inorganic cation exchanger, while the second uses permutit as an organic cation exchanger. Both techniques separate Cr-51(III) from Cr(VI) using hydrochloric acid as an eluting agent. The TX-100CeP method yielded 90±0.5% Cr-51, while the permutit method yielded 85±0.5% Cr-51. The TX-100CeP method is considered more suitable as it provides high yield with a simple procedure.
Identification and characterization of intact proteins in complex mixturesExpedeon
The ability to fully characterize proteins in their intact forms allows thorough biological investigation of the functional importance of changes such as post-translational modifications, protein isoforms/sequence variations, and protease cleavages.
This document summarizes the use of desorption electrospray ionization mass spectrometry (DESI-MS) for various applications including tissue imaging, analysis of drugs and metabolites, food analysis, and quantitation of pharmaceutical molecules. DESI-MS allows direct analysis of samples without sample preparation or matrix application. It provides high sensitivity, molecular weight range from 50-5000 Da, and spatial resolution of 50um-2mm. DESI-MS has been used for applications such as imaging of lipids in rat brain tissue, screening of synthetic cannabinoids, quantitation of drugs in plasma, and analysis of food products like corn chips.
The document describes a study examining the ability of Magnetospirullum sp. VITRJS5 to reduce perchlorate. The study cultured the microorganism with acetate as the electron donor and oxygen, nitrate, or perchlorate as the electron acceptors. Statistical analysis was conducted and showed that M. sp. VITRJS5 was able to reduce oxygen, nitrate, and perchlorate while growing. Growth curves and mean reduction levels are presented for the different conditions tested.
Absolute quantification of mAbs and ADCs : forget amino acid analysis and shi...Quality Assistance s.a.
Absolute quantification of mAbs and ADCs: Quality Assistance developed an innovative analytical method based on sulfur quantification by ICP-MS/MS
Visit www.quality-assistance.com for more information
This document summarizes a study that developed an LC-MS/MS method to simultaneously detect horse meat and the banned substance phenylbutazone (BUTE) in meat samples. The method uses peptide markers specific to horse proteins and MRM transitions to detect BUTE. Testing showed the method could reliably detect 1% horse meat contamination in beef samples and detect BUTE levels below 10 μg/kg. The LC-MS/MS approach provides a sensitive, specific and reliable multi-species screening method and allows simultaneous detection of veterinary drug residues, advantages over existing DNA- or protein-based detection methods.
Design and development of nanomaterials for biomolecular detection and cancer...Arun kumar
This document discusses the design and development of nanomaterials for biomolecular detection and cancer therapy. It describes using graphene-protamine conjugates for sensing heparin and graphene/NiO composites for cholesterol sensing. For cancer therapy, it outlines using NMOF/PEG conjugates for drug delivery and ROS therapy, NCTP conjugates for drug delivery and cancer senescence, and PAMAM/5-FU conjugates for targeting oncoproteins. The document examines nanomaterials for improved biomolecular detection and drug delivery for cancer treatment.
From WCBP 2015: GlycoWorks RapiFluor-MS for Glycan ProfilingWaters Corporation
In this vendor presentation given at WCBP, we introduce a new glycan fluorescent label, RapiFluor-MS, which is used to label N-linked glycans. This innovative label improves FLR and mass spectrometry signals for glycan characterization and profiling analysis. Plus - our GlycoWorks RapiFluor-MS N-Glycan Kit now allows you to finish glycan deglycosylation, labeling and cleanup in 3 steps and just 30 minutes.
Learn more about this novel technology and its applications for glycosylated proteins:
http://www.waters.com/glycans
See more of Waters' solutions for biopharmaceutical laboratories:
http://www.waters.com/biopharmaceutical
Playback a full video of this talk, recorded Jan. 27, 2015 at WCBP:
http://www.waters.com/waters/library.htm?cid=10116552&lid=134833758
The document describes Quicksilver Scientific's Mercury Tri-Test, which analyzes mercury speciation and compartment ratios to assess mercury body burden and excretion without provocation. It separates methylmercury and inorganic mercury to reveal sources like fish or dental amalgams. Comparisons of mercury levels in blood, hair, and urine provide indices of each form's excretion ability. This helps identify issues like poor excretion or a methylmercury detox enzyme deficiency. The test aims to clearly show mercury status without using potentially harmful chelation agents like challenge tests.
Academic lecture to MSc students on trace elements in human health, their clinical importance and analytical measurement. Covering the techniques of inductively coupled plasma mass spectrometry (ICP-MS), ICP-optical emission spectroscopy and atomic absorption spectroscopy (AAS). MSC Health and Clinical Science
The document summarizes various automated systems used in bacteriology. It discusses automated blood culture systems like BacT/ALERT 3D, BD BACTEC, and VersaTREK which continuously monitor blood cultures. It also describes automated identification and antimicrobial susceptibility testing systems like Vitek, Phoenix, and MicroScan Walkaway. Finally, it provides an overview of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) which uses the mass spectra of proteins to rapidly identify bacteria and yeast.
Application of nanomaterials in lifescienceArun kumar
The document discusses the application of nanomaterials in life sciences. It begins with an introduction to nanomaterials, their properties, synthesis, and classification. It then discusses two key applications: drug delivery and biosensors. For drug delivery, it provides examples of using metal-organic frameworks for controlled drug release. For biosensors, it details the development of a graphene-nickel oxide nanocomposite for cholesterol detection with high sensitivity and selectivity. In conclusion, the document outlines the potential of nanotechnology to advance areas like targeted drug delivery and disease diagnostics.
This document discusses two electrophoresis techniques: capillary electrophoresis and isoelectric focusing. Capillary electrophoresis uses very small volumes of samples and reagents in fused silica capillaries, allowing for high resolution, automation, and detection of low analyte levels. Isoelectric focusing separates proteins based on their isoelectric point, where they have no net charge and become immobilized in a pH gradient gel. Both techniques have various applications in biochemistry including separating proteins, DNA, amino acids, and other biomolecules.
CE is an efficient separation technique that uses differences in charge and size to separate molecules in a capillary tube under the influence of an electric field. It provides high resolution separations using small sample volumes in short time frames. Variations include CZE which relies on differences in charge, CGE which separates by size in a gel, and CIEF which focuses molecules at their isoelectric point. CE has advantages over HPLC in speed, efficiency, and cost but lacks reproducibility and is not suitable for large-scale separations.
Protein Thermal Shift™ Solution Using Applied Biosystems Real-Time PCR SystemsThermo Fisher Scientific
Life Technologies Product Manager for Real-time PCR Systems, Levente Egry, provides an overview of Protein Thermal Shift™ technology, products and applications at the PepTalk 2012 in San Diego, California.
To learn more about the solutions in this presentation, visit: www.appliedbiosystems.com/proteinmelt
Air Monitoring Applications of Selected Ion Flow Tube MS (SIFT-MS)IS-X
Selected Ion Flow Tube MS (SIFT-MS) is a powerful technique that permits ultra-sensitive analysis of organic and inorganic components in air. The application of three independent precursor ions and knowledge of reaction schemes and reactions kinetics allows quantification in real-time.
1. The document describes two applications of extractive electrospray ionization tandem mass spectrometry (EESI-MS/MS).
2. The first application is the direct quantification of creatinine in urine samples. Creatinine-d3 was used as an internal standard to quantify creatinine levels with high accuracy and precision in less than 0.3 minutes.
3. The second application is the rapid detection of trace levels of lead in various water-based samples without any sample pretreatment. Semi-quantitative analysis of lead was performed with good linearity and recovery rates between 1-100 ppt.
EPA Method 200.7, Trace Elements in Water, Solids, and Biosolids by Inductively Coupled Plasma-Atomic Emission Spectrometry, describes the procedure and requirements for multi-element determinations by ICP-AES. This presentation demonstrates the capability of the ICPE-9820, with the ASC-9800 Auto-sampler and the Standard Addition Kit, to produce quick, accurate results that comply with the method.
Selected ion flow tube MS - Online quantitative VOC analysisIS-X
SIFT-MS accurately identifies and quantifies volatile compounds. The analysis occurs through a process of chemical ionization in a flow tube.
To analyze volatile compounds, a sample is introduced into the flow tube at a precisely controlled rate. Inside the flow tube reagent ions react with volatile compounds present in the sample. This reaction forms product ions, which are analyzed by a quadrupole mass spectrometer and particle multiplier. The result is spectra, which instantly identify and quantify volatile compounds.
Analysis is performed by a Voice Series instrument, which can be based in a laboratory, on a production line, or in a vehicle. Results can be automatically exported to other systems, such as production line controllers.
We provide turnkey solutions, or you can create your own analysis suites and protocols, including how results are processed and presented.
This study examined how calsequestrin (Casq2) regulates the activity of RyR2 calcium release channels in dog heart muscle. Experiments showed that Casq2 acts as a luminal calcium sensor in the sarcoplasmic reticulum, controlling RyR2 open probability based on luminal calcium levels. Specifically, the study found that 1) Casq2 binds terbium, which can be displaced by calcium or magnesium, 2) luminal terbium or magnesium increases RyR2 open probability similarly to luminal calcium, and 3) magnesium competes with calcium for binding on Casq2. These results support the conclusion that Casq2 acts as a luminal divalent cation sensor that modulates RyR2 gating
Bottom-up workflows have been a staple of mass spectrometry based proteomic approaches. We present in this work a fully automated solution for MALDI-TOF MS based peptide mapping experiments.
A Novel Method For Production of Cr-51_INISmohamed aydia
The document describes a novel method for producing Cr-51 using two different ion exchange separation techniques. The first technique uses triton X-100 cerium(IV)phosphate (TX-100CeP) as an inorganic cation exchanger, while the second uses permutit as an organic cation exchanger. Both techniques separate Cr-51(III) from Cr(VI) using hydrochloric acid as an eluting agent. The TX-100CeP method yielded 90±0.5% Cr-51, while the permutit method yielded 85±0.5% Cr-51. The TX-100CeP method is considered more suitable as it provides high yield with a simple procedure.
Identification and characterization of intact proteins in complex mixturesExpedeon
The ability to fully characterize proteins in their intact forms allows thorough biological investigation of the functional importance of changes such as post-translational modifications, protein isoforms/sequence variations, and protease cleavages.
This document summarizes the use of desorption electrospray ionization mass spectrometry (DESI-MS) for various applications including tissue imaging, analysis of drugs and metabolites, food analysis, and quantitation of pharmaceutical molecules. DESI-MS allows direct analysis of samples without sample preparation or matrix application. It provides high sensitivity, molecular weight range from 50-5000 Da, and spatial resolution of 50um-2mm. DESI-MS has been used for applications such as imaging of lipids in rat brain tissue, screening of synthetic cannabinoids, quantitation of drugs in plasma, and analysis of food products like corn chips.
The document describes a study examining the ability of Magnetospirullum sp. VITRJS5 to reduce perchlorate. The study cultured the microorganism with acetate as the electron donor and oxygen, nitrate, or perchlorate as the electron acceptors. Statistical analysis was conducted and showed that M. sp. VITRJS5 was able to reduce oxygen, nitrate, and perchlorate while growing. Growth curves and mean reduction levels are presented for the different conditions tested.
Absolute quantification of mAbs and ADCs : forget amino acid analysis and shi...Quality Assistance s.a.
Absolute quantification of mAbs and ADCs: Quality Assistance developed an innovative analytical method based on sulfur quantification by ICP-MS/MS
Visit www.quality-assistance.com for more information
This document summarizes a study that developed an LC-MS/MS method to simultaneously detect horse meat and the banned substance phenylbutazone (BUTE) in meat samples. The method uses peptide markers specific to horse proteins and MRM transitions to detect BUTE. Testing showed the method could reliably detect 1% horse meat contamination in beef samples and detect BUTE levels below 10 μg/kg. The LC-MS/MS approach provides a sensitive, specific and reliable multi-species screening method and allows simultaneous detection of veterinary drug residues, advantages over existing DNA- or protein-based detection methods.
Design and development of nanomaterials for biomolecular detection and cancer...Arun kumar
This document discusses the design and development of nanomaterials for biomolecular detection and cancer therapy. It describes using graphene-protamine conjugates for sensing heparin and graphene/NiO composites for cholesterol sensing. For cancer therapy, it outlines using NMOF/PEG conjugates for drug delivery and ROS therapy, NCTP conjugates for drug delivery and cancer senescence, and PAMAM/5-FU conjugates for targeting oncoproteins. The document examines nanomaterials for improved biomolecular detection and drug delivery for cancer treatment.
From WCBP 2015: GlycoWorks RapiFluor-MS for Glycan ProfilingWaters Corporation
In this vendor presentation given at WCBP, we introduce a new glycan fluorescent label, RapiFluor-MS, which is used to label N-linked glycans. This innovative label improves FLR and mass spectrometry signals for glycan characterization and profiling analysis. Plus - our GlycoWorks RapiFluor-MS N-Glycan Kit now allows you to finish glycan deglycosylation, labeling and cleanup in 3 steps and just 30 minutes.
Learn more about this novel technology and its applications for glycosylated proteins:
http://www.waters.com/glycans
See more of Waters' solutions for biopharmaceutical laboratories:
http://www.waters.com/biopharmaceutical
Playback a full video of this talk, recorded Jan. 27, 2015 at WCBP:
http://www.waters.com/waters/library.htm?cid=10116552&lid=134833758
The document describes Quicksilver Scientific's Mercury Tri-Test, which analyzes mercury speciation and compartment ratios to assess mercury body burden and excretion without provocation. It separates methylmercury and inorganic mercury to reveal sources like fish or dental amalgams. Comparisons of mercury levels in blood, hair, and urine provide indices of each form's excretion ability. This helps identify issues like poor excretion or a methylmercury detox enzyme deficiency. The test aims to clearly show mercury status without using potentially harmful chelation agents like challenge tests.
Academic lecture to MSc students on trace elements in human health, their clinical importance and analytical measurement. Covering the techniques of inductively coupled plasma mass spectrometry (ICP-MS), ICP-optical emission spectroscopy and atomic absorption spectroscopy (AAS). MSC Health and Clinical Science
The document summarizes various automated systems used in bacteriology. It discusses automated blood culture systems like BacT/ALERT 3D, BD BACTEC, and VersaTREK which continuously monitor blood cultures. It also describes automated identification and antimicrobial susceptibility testing systems like Vitek, Phoenix, and MicroScan Walkaway. Finally, it provides an overview of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) which uses the mass spectra of proteins to rapidly identify bacteria and yeast.
Application of nanomaterials in lifescienceArun kumar
The document discusses the application of nanomaterials in life sciences. It begins with an introduction to nanomaterials, their properties, synthesis, and classification. It then discusses two key applications: drug delivery and biosensors. For drug delivery, it provides examples of using metal-organic frameworks for controlled drug release. For biosensors, it details the development of a graphene-nickel oxide nanocomposite for cholesterol detection with high sensitivity and selectivity. In conclusion, the document outlines the potential of nanotechnology to advance areas like targeted drug delivery and disease diagnostics.
This document discusses two electrophoresis techniques: capillary electrophoresis and isoelectric focusing. Capillary electrophoresis uses very small volumes of samples and reagents in fused silica capillaries, allowing for high resolution, automation, and detection of low analyte levels. Isoelectric focusing separates proteins based on their isoelectric point, where they have no net charge and become immobilized in a pH gradient gel. Both techniques have various applications in biochemistry including separating proteins, DNA, amino acids, and other biomolecules.
CE is an efficient separation technique that uses differences in charge and size to separate molecules in a capillary tube under the influence of an electric field. It provides high resolution separations using small sample volumes in short time frames. Variations include CZE which relies on differences in charge, CGE which separates by size in a gel, and CIEF which focuses molecules at their isoelectric point. CE has advantages over HPLC in speed, efficiency, and cost but lacks reproducibility and is not suitable for large-scale separations.
This document discusses capillary electrophoresis, a technique for separating charged molecules. It can separate proteins, peptides, amino acids, nucleic acids, and other molecules. Capillary electrophoresis works by applying an electric field across a thin capillary tube, which causes different molecules to migrate through the buffer at different rates based on their charge and size. It provides high separation efficiency using only small sample volumes. The document outlines the basic components and process of capillary electrophoresis.
Capillary electrophoresis and application by Dr. Anurag YadavDr Anurag Yadav
Dr. Anurag Yadav presented on capillary electrophoresis. Capillary electrophoresis is a technique used to separate molecules like amino acids, peptides, proteins, DNA fragments, and drugs based on their charge and size. It involves applying a high voltage to a thin capillary filled with buffer, causing molecules to separate as they migrate through the capillary at different speeds. Detection is usually done through ultraviolet absorption, refractive index changes, or fluorescence near the end of the capillary. Capillary electrophoresis provides high resolution, requires only small sample volumes, and can separate a wide range of biomolecules.
Capillary electrophoresis is a separation technique that uses charged molecules' differential migration in response to an applied electric field. Key components include a capillary, buffers, and detectors. Molecules are separated based on their charge and size. There are several modes, including capillary zone electrophoresis which separates based on charge and size, and micellar electrokinetic capillary chromatography which uses micelles to separate charged and neutral molecules. Capillary electrophoresis provides high resolution, efficiency, and versatility in analyzing various molecules like proteins, nucleic acids, and inorganic ions.
Capillary electrophoresis principles and applications Indira Shastry
Capillary electrophoresis is a technique used to separate charged molecules like proteins, nucleic acids, and other small molecules based on their electrophoretic mobility. It has several advantages over traditional gel electrophoresis methods like faster separation, higher resolution, and requiring only small sample volumes. In capillary electrophoresis, samples are injected into a thin, fused silica capillary tube and separated under the influence of an applied electric field based on differences in their charge and size. Key applications of capillary electrophoresis include hemoglobin electrophoresis for detecting abnormal hemoglobins, serum protein electrophoresis, and DNA sequencing. It provides a rapid, automated, and high-resolution method for analyzing biomolecules.
This document provides information about electrophoresis. It discusses different types of electrophoretic techniques including slab electrophoresis, capillary electrophoresis, capillary zone electrophoresis, capillary gel electrophoresis, capillary isotachophoresis, and micellar electrokinetic chromatography. It also covers principles, instrumentation, applications in areas like DNA analysis and vaccine analysis.
Loop Mediated Isothermal Amplification (LAMP)MD ROBEL AHMED
Loop Mediated Isothermal Amplification (LAMP) is a kinds of PCR reaction. This technology is most reliable and convenient than conventional PCR procedure. We can call it updated version of PCR. Rapid, Easy detectable and cheap to accomplish the process.
This document discusses using near infrared spectroscopy to identify vulnerable plaque by measuring pH and lactate levels. The plan is to develop a fiber optic catheter that can determine pH and lactate levels using NIR spectroscopy and multivariate calibration. Previous studies have looked at lipid content but not inflammatory responses. The hypotheses are that areas of inflammation will be more acidic and have higher lactate due to anaerobic metabolism, and these metrics can identify vulnerable plaque. Near term plans include calibrating pH probes, testing the approach on rabbit aorta, and developing a smaller probe for human studies. The goal is to locate vulnerable plaque using NIR spectroscopy.
This document describes the design and testing of a fiber optic probe to measure metabolic properties of human carotid plaque. The probe was designed to interrogate a small tissue volume (<1 mm3) and determine pH and lactate concentration in vitro. Monte Carlo simulations were used to optimize probe geometry for depth penetration. Several probe designs were tested and a final probe with a 50 micron source-receiver separation was chosen. Human carotid plaques were studied in vitro to validate experimental stability over 4 hours. The probe and experimental methods achieved the stability criteria of less than 0.03 pH change and 0.4°C temperature change per hour, demonstrating feasibility for optical spectroscopy of plaque metabolism.
This document describes the design and testing of a fiber optic probe to measure metabolic properties of human carotid plaque. The probe was designed to interrogate a small tissue volume (<1 mm3) and determine pH and lactate concentration in vitro. Monte Carlo simulations were used to model light propagation in tissue and optimize probe geometry. Several probe designs were tested and a final probe with a 50 micron source-receiver separation was chosen. Human carotid plaques were studied in vitro to validate experimental stability over 4 hours. The probe and experimental methods achieved the stability criteria of less than 0.03 pH change and 0.4°C temperature change per hour, demonstrating feasibility for optical determination of metabolic status in vulnerable plaque.
151 performance of a localized fiber opticSHAPE Society
This document describes the design and testing of a fiber optic probe to measure metabolic markers in human carotid plaque tissue samples in vitro. The probe was designed to interrogate a small volume of tissue (~1 mm3) and measure tissue lactate concentration and pH. Human plaque samples were collected and studied in a controlled in vitro setup to validate experimental stability over time. Optical absorption spectra were collected from plaque samples and related to reference measurements of lactate concentration and pH through multivariate calibration models, achieving accurate predictions. The fiber optic probe design and in vitro experimental methods were able to precisely measure metabolic markers for characterization of plaque vulnerability.
This document discusses recent advancements in impurity profiling. It defines impurity profiling and outlines the importance of identifying impurities. The history of instrumental analysis for impurity identification is reviewed. A systematic approach to impurity profiling is presented, including thresholds for identification, qualification, and reporting. Methods for isolation and identification of impurities are described, including case studies. Both classical and modern methodologies are covered, with examples of separation techniques like HPLC, TLC, and capillary electrophoresis.
The document provides information on PCR and RT-PCR including definitions, components, steps, types, and applications. PCR is described as a technique for amplifying a single DNA template using thermal cycling. It requires a DNA template, primers, Taq polymerase, dNTPs, and buffer. The main steps are denaturation of the DNA, annealing of primers, and elongation. RT-PCR is described as a technique for amplifying RNA using reverse transcriptase to generate cDNA, which is then amplified using PCR. Applications described include disease diagnosis, forensics, paternity testing, and detecting infections.
The document summarizes the synthesis and characterization of N-substituted tetrahydrocarbazole compounds and their molecular docking studies and antibacterial evaluation. Key steps included synthesizing substituted tetrahydrocarbazoles via refluxing cyclohexanone with substituted phenylhydrazines. The tetrahydrocarbazoles were then reacted with substituted acid chlorides to obtain N-substituted derivatives. The derivatives were characterized using techniques like NMR, IR and tested for antibacterial activity against pathogens using the agar cup method. Molecular docking studies of the derivatives were performed targeting the Gln-6-p enzyme to understand binding interactions.
This document summarizes the validation of a quantitative LC/MSMS method to measure the cleavage of a 17-residue SNAP-25 epitope by botulinum neurotoxin serotype A (BoNT/A). Peptides representing the intact 17-mer epitope and its cleavage products (11-mer and 6-mer) were characterized. The method was validated and used to evaluate the kinetics of 17-mer cleavage, finding near-completion at 40-45 minutes. The validated method will be applied to evaluate potential BoNT/A inhibitors and detect contamination in samples.
Pesticide residue detection methods by making use of the quantum related technologies are described, the motivation is to push the detection limit, to protect the environment we are to survive beyond what Stephen Hawking predicted!
This document describes a study using ultra performance liquid chromatography coupled with quadrupole time-of-flight mass spectrometry (UPLC/QTOF) for multi-residue screening of veterinary drugs. Researchers developed a method to separate 70 veterinary drug standards using UPLC and detected the drugs using QTOF MS. The method was then tested on pork muscle tissue extracts spiked with veterinary drugs. The study aimed to develop a single extraction and detection method for screening banned and regulated veterinary drugs in various animal tissues and fluids.
Fluorescence spectroscopy analyzes fluorescence from a sample using light, usually ultraviolet light, to excite electrons in molecules of certain compounds causing them to emit light of a lower energy. Molecules have various electronic and vibrational energy levels, and fluorescence spectroscopy examines electronic state transitions. A photon excites a molecule to a higher vibrational state, which then loses energy and drops to the lowest excited state, emitting a photon of different energy upon returning to the ground state.
The document discusses potentiometric HPLC and CE detection which uses a patented sensor to measure the potential between a sensor and reference electrode transformed into a concentration signal. The sensor uses different receptor molecules in its coating to selectively detect various analytes including alkaloids, basic drugs, detergents, and perfluorinated acids with detection limits orders of magnitude better than UV. The technique can also detect oligonucleotides and is well-suited for lipophilic cationic and anionic organic compounds.
Flow cytometry is a technique that allows for the measurement of physical and chemical characteristics of single cells flowing through a stream of fluid. It enables the simultaneous multiparametric analysis of thousands of cells per second. Cells are labeled with fluorescent markers and passed individually through a laser beam, where detectors measure the cells' light scattering and fluorescent properties. This information can be used to identify and sort cell subpopulations. Flow cytometry provides high-speed analysis of multiple parameters at a single-cell level and is widely used in research, clinical diagnosis, and other applications.
Stress acutely promotes calcium-dependent glutaminergic synaptic plasticity i...Russell Kan
1. The study found that activation of α1-adrenergic receptors (α1ARs) or corticotropin releasing factor receptors type 2 (CRF2Rs) in dopamine neurons enhances the induction of long-term potentiation of NMDA receptors (NMDAR-LTP) through increasing intracellular calcium release.
2. In vitro, acute stress hormones like norepinephrine or CRF facilitated NMDAR-LTP by amplifying calcium-induced calcium release via IP3 receptors.
3. In vivo, acute social defeat stress strengthened the acquisition of cocaine-conditioned place preference, an effect prevented by blocking α1ARs and CRF2Rs in the ventral te
Using multiple imaging techniques, the study found:
1) Fluorescence microscopy with transgenic mice expressing fluorescent reporters allowed visualization of axonal damage over time.
2) Confocal microscopy revealed reactive changes in axotomized neurons such as sprouting.
3) Multi-photon microscopy enabled in vivo and in vitro imaging at greater depths with less phototoxicity.
This document is a dissertation presented by Jukka Sund at the University of Helsinki on April 4th 2014. The dissertation investigates the health effects of engineered nanomaterials (ENMs) using proteomic methods. It first evaluates how ENMs interact with plasma and cellular proteins and then analyzes the effects of ENM exposure on the intracellular proteome and secretome of human macrophages. The results provide new insights into how ENM properties govern interactions with proteins and influence cellular responses. This work contributes to understanding the biological effects of ENMs.
This document discusses standardization strategies in flow cytometry. It begins by describing common applications of flow cytometry like immunophenotyping, cell cycle analysis, cell sorting, DNA content analysis, and apoptosis analysis. It then discusses how flow cytometry can be used to characterize cell therapy products by measuring identity, purity, viability, potency, and stability. The document outlines sources of variability in flow cytometry experiments and describes strategies for standardizing instruments, such as defining baseline settings, running daily quality control, optimizing photomultiplier tube voltages, using biological controls, and monitoring instrument performance over time using beads. The importance of consistent settings and marker quantification using antibodies bound per cell is also discussed.
Using lc ms to quantify and identify natural toxins in food and environmental...泰聖 葉
This document summarizes a presentation on using LC-MS methods for shellfish toxin analysis. It introduces several shellfish toxins produced by algae that can cause poisoning in humans. LC-MS has become the preferred method for monitoring toxins due to its ability to detect multiple toxins simultaneously with high sensitivity and accuracy. Reference materials are important to validate LC-MS methods and ensure accurate quantification. The document describes various LC-MS methods developed for analyzing lipophilic toxins and provides an example of identifying a new toxin involved in a shellfish poisoning incident.
This document summarizes a presentation on marine chemistry given at Dublin City University. It discusses several topics related to marine chemistry including ocean services, the history of understanding salinity, ocean carbon and acidification, monitoring hazardous substances, and shellfish toxins. Diagrams are included on topics like biogeochemical processes in the oceans, climate change impacts like ocean acidification and nutrients, and types of pollution affecting the oceans.
This document discusses using boronic acid fluorophores for saccharide sensing to enable non-invasive glucose monitoring. It outlines the health issues of diabetes that better glucose monitoring could help address. Current monitoring methods like finger pricking and implanted devices are discussed. The document proposes using boronic acid sensors immobilized on contact lenses as a continuous and non-invasive monitoring platform. It describes synthesizing novel boronic acid sensors and shows their ability to fluorescently detect glucose concentration changes. Future work includes immobilizing the sensors on a lens platform for ocular glucose sensing.
The document discusses the development of point-of-use nanosensors for applications in sustainable agriculture, food safety, and environmental monitoring. It describes the vision for decentralized testing using nanosensors for rapid, on-site detection of important parameters. This would allow for real-time monitoring of events like disease outbreaks or nutrient levels. Examples discussed include nanosensors for disease diagnosis in livestock and label-free detection of viruses. The goals are to develop low-cost, easy-to-use nanosensor systems that can provide rapid, accurate results comparable to laboratory tests and allow for on-farm use.
This document discusses using inertial microfluidics to temporally resolve the receptor activation mechanisms of EGFR. The goal is to preserve reaction intermediates during ligand-induced receptor activation by delivering ligand in milliseconds, providing uniform incubation times, and rapidly quenching the reaction to enable analysis of phosphorylated tyrosine levels. This approach aims to determine the phosphorylation sequence during receptor activation and how it relates to monomer and dimer states of EGFR using inertial focusing in a microfluidic device to control incubation times with millisecond precision.
This document discusses the evolution of microfluidics and biosensors towards systems with revolutionary analytical capabilities. It covers topics such as continuous monitoring sensors, implantable glucose sensors, commercial products like Abbott's Freestyle Libre, Google's contact lens project, and challenges around long-term reliable sensing. The document also examines autonomous platforms for water quality monitoring and reagent-based techniques versus direct sensing approaches.
This document summarizes methods for analyzing oxyhalides using ion chromatography-mass spectrometry (IC-MS). It outlines considerations for coupling IC to MS, including flow rate compatibility and eluent volatility. Two main coupling methods are described: solvent addition, where an organic solvent is added post-column, and direct coupling, with organic solvent added pre-separation. Both methods are shown to achieve low detection limits in the picogram range for oxyhalides like bromate and perchlorate. Direct coupling provides better retention time reproducibility and precision compared to solvent addition. The document concludes by acknowledging contributions and providing information on submitting a poster abstract for a conference on the topic.
This document discusses challenges in method validation from a regulatory laboratory perspective. It begins by defining validation and why it is important. Developing a validation procedure requires following accreditation standards and legislation. Harmonizing the validation approach has advantages like allowing results comparison. Key challenges include a lack of certified analytical standards, validating for multiple matrices, calculating measurement uncertainty, finding proficiency tests, ongoing verification, and determining what constitutes revalidation. The document promotes Eurachem resources on method validation and an upcoming Irish workshop on the topic.
The document discusses trends in the pharmaceutical industry through 2020. It notes ongoing challenges like unmet medical needs, aging populations, and chronic diseases. Future drivers include these aging and underserved populations in developing countries and effects of global warming. The industry will see more integrated value chains between pharma, payers, and providers. Treatment costs are unsustainable so the focus will shift to prevention and pharma providing full healthcare packages with payment for outcomes not just treatment. Pharma business models will change significantly, moving from blockbuster drug sales to more services across the healthcare spectrum. Laboratories of the future will need to develop new capabilities and talent to achieve this changed vision.
This document summarizes Dr. Saidhbhe O'Riordan's research using electrochemical methods to monitor physiological biomarkers in real-time. Specifically, it discusses using sensors to detect hydrogen peroxide levels in rodent brains to study disorders like Parkinson's disease, and oxygen levels to evaluate muscle tissue viability and potentially translate this to human patients. The research aims to further understand disease pathogenesis and provide diagnostic tools. Key findings include characterizing a dual catalase-based sensor for detecting brain hydrogen peroxide levels in freely-moving animals and developing an oxygen sensor with potential for clinical use in monitoring brain and peripheral oxygen levels in rodents and eventually humans.
This document discusses new technologies for single cell detection and analysis using laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). It describes a method for labelling T cells with gadolinium for tracking cell-based therapies. A new laser ablation system design is presented that improves speed and sensitivity for single cell analysis by using a small inner chamber and single diameter transport tubing to minimize sample loss. The system enables detection of labelled cells for over 10 days both in vitro and in mouse studies.
This document outlines a presentation on innovative strategies to accelerate drug development. It discusses Pfizer's locations in the UK and facilities for research, manufacturing, and commercial operations. Predictive science approaches using advanced data and technologies are described to enable accelerated development from molecule to medicine. Continuous manufacturing platforms and modular facilities are presented as ways to improve efficiency.
This document discusses prospects for myocardial tissue engineering. It begins by outlining epidemiological data on heart failure mortality rates compared to cancer. It then reviews the number of heart transplants performed globally each year. The document discusses challenges with current continuous-flow ventricular assist devices and INTERMACS registry data. Alternatives to heart transplantation explored include mechanical assist devices, polymers, cell therapy, and tissue engineering. Early cell transplantation studies and limitations are outlined. The unique complexities of engineering myocardial tissue are discussed. Studies generating vascularized cardiac grafts and decellularized heart scaffolds are summarized. Recent work on electrically contractile polymers for augmenting right ventricular function is presented.
This document summarizes Professor Tony Killard's presentation on printed sensor technology for commercialization. It discusses combining advanced functional materials, printing production technology, and bioassay integration to produce point-of-care diagnostic devices. Specifically, it focuses on developing an ammonia breath sensor called AmBeR for applications in monitoring liver and kidney function. The presentation provides details on inkjet printing polyaniline nanoparticle sensors, correlating sensor responses to clinical measurements, and plans for clinical evaluations and mass production to commercialize the AmBeR sensor technology.
This document discusses the use of soft x-ray nanoanalytical tools for studying thin film organic electronics. Specifically, it summarizes research using scanning transmission x-ray microspectroscopy (STXM) and resonant soft x-ray scattering (RSoXS) to characterize the nanoscale morphology, chemical composition, and charge transport properties of organic thin films and devices. STXM provides chemical imaging down to 12 nm resolution while RSoXS can resolve structures below the STXM resolution limit. Together these techniques provide insights into structure-property relationships in organic photovoltaics, field-effect transistors, and other organic electronic materials and devices.
1) Researchers at the University of Manchester isolated graphene in 2004 and were awarded the Nobel Prize in Physics in 2010 for their work.
2) Plans were announced in 2013 and 2014 to build the £61m National Graphene Institute and £60m Graphene Engineering Innovation Centre to further research and commercialize graphene.
3) The document outlines ongoing graphene research at Manchester in areas such as energy storage, membranes, composites, printing, and 2D materials beyond graphene, as well as production methods and potential applications of graphene.
Performing electrophysiological measurements in humans inside Magnetic Resona...Trinity College Dublin
Performing electrophysiological measurements in humans inside Magnetic Resonance Imaging scanners; applications in Epilepsy research and other areas by Louis Lemieux
The technology uses reclaimed CO₂ as the dyeing medium in a closed loop process. When pressurized, CO₂ becomes supercritical (SC-CO₂). In this state CO₂ has a very high solvent power, allowing the dye to dissolve easily.
Unlocking the mysteries of reproduction: Exploring fecundity and gonadosomati...AbdullaAlAsif1
The pygmy halfbeak Dermogenys colletei, is known for its viviparous nature, this presents an intriguing case of relatively low fecundity, raising questions about potential compensatory reproductive strategies employed by this species. Our study delves into the examination of fecundity and the Gonadosomatic Index (GSI) in the Pygmy Halfbeak, D. colletei (Meisner, 2001), an intriguing viviparous fish indigenous to Sarawak, Borneo. We hypothesize that the Pygmy halfbeak, D. colletei, may exhibit unique reproductive adaptations to offset its low fecundity, thus enhancing its survival and fitness. To address this, we conducted a comprehensive study utilizing 28 mature female specimens of D. colletei, carefully measuring fecundity and GSI to shed light on the reproductive adaptations of this species. Our findings reveal that D. colletei indeed exhibits low fecundity, with a mean of 16.76 ± 2.01, and a mean GSI of 12.83 ± 1.27, providing crucial insights into the reproductive mechanisms at play in this species. These results underscore the existence of unique reproductive strategies in D. colletei, enabling its adaptation and persistence in Borneo's diverse aquatic ecosystems, and call for further ecological research to elucidate these mechanisms. This study lends to a better understanding of viviparous fish in Borneo and contributes to the broader field of aquatic ecology, enhancing our knowledge of species adaptations to unique ecological challenges.
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
Authoring a personal GPT for your research and practice: How we created the Q...Leonel Morgado
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
ESPP presentation to EU Waste Water Network, 4th June 2024 “EU policies driving nutrient removal and recycling
and the revised UWWTD (Urban Waste Water Treatment Directive)”
1. Capillary Electrophoresis technique for rapid separation and
detection of Organophosphate Nerve Agents.
Anna Hogan
Sensing and Separation Group,
Department of Chemistry and
Life Science Interface Group,
Tyndall National Institute
University College Cork
Ireland
15/04/16
CASI
2. Classification in terms of physiological effects produced on humans by the Chemical
Warfare (CW) agents used in warfare :
•Nerve agents
Organophosphate compounds
•Vesicants (blistering agents)
mustards and arsenicals
•Bloods agents (cyanogenic agents)
hydrogen cyanide and cyanogen chloride
Chemical Warfare
3. Chemical Warfare
•Choking agents (pulmonary agents)
chlorine, phosgene, diphosgene, nitric oxide,
and perfluoroisobutylene
•Riot-control agents (tear gases)
2-chloroacetophenone (CN),
and 2-chlorobenzilidenemalononitrile (CS)
•Psychomimetic agents
lyserigic acid diethylamide (LSD)
and 3-quinuclidinyl benzilate (BZ)
•Toxins
botulinum neurotoxin (agent X)
4. Toxic effects
Types of toxic effects observed with pesticides and nerve gases:
•Inhibition of cholinesterases:
The accumulation of acetycholine leads to:
muscarinic
nicotinic
central nervous system effects
•Delayed neuropathy
Caused by certain OP compounds, such as tri-orthocresyl phosphate. The OP
compounds interact with a neuropathy target esterase disturbing metabolism
in the neurone.
degradation of peripheral nerves in the distal parts of lower limbs which may
spread to the upper limbs. (“ Jake paralysis”)
•Treatment
pralidoxime
atropine
5. Nerve agents
Paraoxon-methyl (MPX)
Paraoxon-ethyl (EPX)
Parathion-methyl (MPT)
Parathion-ethyl (EPT)
Fenitrothion (FT)
Organophosphorus insecticides are the most widely used and the most frequently
involved in fatal human poisonings.
6. CE -UV
Capillary electrophoresis
High
Voltage
Detector
Electroosmotic flow
Cathode (-)Anode (+)
Buffer Buffer
+
N
N
_
-
+
Computer
Capillary
Figure 1: Schematic representation of capillary electrophoresis system with optical detection. The
circled +’s ,N’s, and –‘s represent cationic, neutral, and anionic solutes, respectively.
Figure 2: Schematic of separation principle in micellar electrokinetic capillary chromatography MEKC*.
*Handbook of capillary and microchip electrophoresis and associated microtechniques. Lander JP.
Boca Raton:CRC Press 2008.
7. CE-UV
Figure 3: Variation of different buffer concentrations Capillary: 8.5 cm
effective length x 50 μm i.d.; peak: 1 – MPX, 2 – EPX, 3 – MPT, 4 - FT
and 5 – EPT; buffer: 35 mM sodium acetate (pH 5), 10 mM SDS;
injection: 10 mbar for 4 s; Detection: 263 nm; temperature: 15 .℃
Overlays are offset, where the scale of y= 5 mAU units.
Figure 4: Effect of applied voltage on migration time. Capillary with
effective length of 8.5 cm x 50 μm i.d.; peak: 1 – MPX, 2 – EPX, 3 – MPT,
4 - FT and 5 – EPT (from left to right); buffer: 35 mM sodium acetate
(pH 5), 10 mM SDS; injection: 10 mbar for 4 s; Detection: 263 nm;
temperature: 15 . Overlays are offset, where the scale of y= 5 mAU℃
units.
8. CE-UV
Figure 5: Electropherogram of OPs ; capillary 8.5 cm x 50 μm i.d.;
peaks: 1 – MPX migrating at 0.80 min, 2 – EPX migrating at 1.34 min
, 3 – MPT migrating at 1.54 min, 4 – FT migrating at 2.06 min and 5
– EPT migrating at 2.39 min ; buffer: 35 mM sodium acetate (pH 5),
10 mM SDS; injection: 10 mBar for 4 s; voltage 20kV; Detection:
263 nm; temperature: 15 .℃
1
2
3
4
5
Organo-
phosphate
Nerve
Agents
t
(min)
b a r Range
(mM)
LOD
(mM)
Paraoxon-
methyl
Paraoxon-
ethyl
Parathion-
methyl
Fenitrothion
Parathion-
ethyl (EPT)
0.8
1.34
1.54
2.06
2.39
-0.0495
-0.3186
-0.3441
-0.3167
-0.318
63.757
93.971
72.365
69.1
72.318
0.9959
0.9710
0.9871
0.9701
0.9971
0.02 – 0.1
0.02 – 0.1
0.02 – 0.1
0.02 – 0.1
0.02 – 0.1
0.01
0.01
0.04
0.04
0.04
Calibration plots are expressed as linear regression equation (y= a + bx), where,
y is peak are and x is the analyte concentration mM.
Table 1: Parameters of CE method: migration time (t), parameters of analytical
curves (b-slope and a-intercept), correlation coefficients (r), the working range
(mM), precision (RSD), Limits Of Detection (LOD).
9. MCE - UV
Microchip Capillary electrophoresis
Figure 7: The real time progress of the separation length-based
electropherograms of peaks on a 45 sec timescale: 1 – MPT, 2 – EPX, and 3 – MPX
(from right to left); buffer: 45 mM acetate buffer (pH 5), 10 mM SDS; Sample
introduction: sample inlet (SI): 1 kV; sample outlet (SO): 0 kV, buffer inlet (BI):
0.34 kV, buffer outlet (BO):0.62 kV for 5 s; Separation settings: (SI): 0 kV, (SO): 0
kV, BI: 1 kV, BO:0 kV for 45 s; Detection: 214 nm.0 12.5 25
Separation length/mm
35sec
25sec
15sec
5sec
Figure 6: Photographs of electrophoresis microchip (Shimadzu Instruments, Kyoto,
Japan) used in experiment dimension 35 and 12.5 given in mm. Four platinum
electrodes on the chip to apply voltages between the sample introduction and
separation reservoirs, the chip encased in a propylene frame.
Sample injection port
Sample introduction channel
UV monochromatic light
Separation channel
Diode array with 1024 elements
1
2
3
12. MCE-C4
D
Advantages of home-made box for microchip capillary electrophoresis with
contactless conductivity detection compare to conventional CE:
Shrink in size and in price
For on-site use
Faster
Simpler
Flexibility of chip holder
Disposability of plastic chips
Effective isolation of sensing electrodes from high separation voltages
Elimination of surface fouling
14. Acknowledgements
Project team Eric
Patricia Anna Walter
(lab-on-chip) (separation) (sensor)
Xi Yineng
This research is supported by European Commission
Contact: anna.hogan@tyndall.ie