This document examines the structure-activity relationships of inhibitors of plasminogen activator inhibitor-1 (PAI-1). [1] Many effective PAI-1 inhibitors contain gallate or digallate groups. [2] The research synthesized compounds with varying numbers of gallates and positions of hydroxyl groups to determine the effects on PAI-1 inhibition. [3] Results showed that electron-rich carbamate handles and modifying gallate to protocatechuate increased inhibition. Future work will test additional structural modifications and attachments.
1) Human intestinal bacteria can convert naturally-occurring plant compounds called phytoestrogens into estrogenic compounds. 2) Studies found lower rates of breast and prostate cancer in Japan and Finland where diets include soybeans and rye bread containing phytoestrogens. 3) These phytoestrogens structurally resemble the human hormone estradiol and can have estrogenic or anti-estrogenic effects depending on blood concentrations.
The document examines the proteomic response of Saccharomyces cerevisiae to hydrogen peroxide induced oxidative stress. Twelve protein spots were analyzed using mass spectrometry, with one spot identified as the protein Sah1. Sah1 is involved in the transmethylation metabolic pathway, which produces glutathione to relieve oxidative stress. Exposure to hydrogen peroxide increased the levels of Sah1, likely to increase glutathione production and combat the reactive oxygen species. Proteomics allows the study of entire protein networks and interactions, helping uncover proteins' functions during stress responses.
Year 12 biology early comm presentation intro onlyRachelCaico
This document contains information for students taking an early commencement biology course, including:
1. An outline of the contents of the course handbook, which includes the textbook, worksheets, presentations, and assessment information.
2. Details of the two biology exams for Units 3 and 4, which will assess students' understanding of key knowledge and skills through a series of questions.
3. An overview of the two areas of study in Unit 3 - Molecules of Life and Detecting & Responding. It lists the key topics to be covered and outcomes to be assessed for each area of study.
4. Details of the school-assessed coursework and examination that make up the 17
This document summarizes a study that used label-free LC-MS/MS to simultaneously identify and quantify proteins in E. coli grown in different carbon sources (glucose, lactose, acetate). The methodology involved growing E. coli in different media, extracting and digesting proteins, and performing LC-MS/MS analysis using alternating low and elevated collision energies to obtain precursor and fragment ion data. Over 7,000 accurate mass measurements of precursors and 25,000 of fragments were obtained. Multiple peptides were identified for relative protein quantitation. Results showed differential expression of proteins involved in carbon utilization pathways between the growth conditions. The label-free quantitation was consistent with other omics methods.
1) Aspartame degradation kinetics depend on factors like pH, temperature, buffer type and concentration, and water activity. Higher temperatures, pH, buffer concentrations and water activities increase degradation rates.
2) The activation energies for aspartame degradation decrease with increasing pH or moisture content. Phosphate buffer significantly enhances degradation more than citrate buffer.
3) In solid systems, degradation rates increase with higher initial buffer concentrations and water activities. However, the glass transition temperature does not influence degradation rates as much as water activity.
This document discusses several controversies in Alzheimer's disease research and treatment approaches. It notes that β-amyloid deposits are often found diffusely in normal elderly individuals without cognitive impairment. Both amyloid and tau appear necessary for amyloid oligomers to induce neuronal changes and dementia. While recent drug trials failed, the document argues that targeting earlier mild disease stages and testing multiple candidates may lead to success in the future.
Simultaneious monitoring of phosphorylation events and protein protein intera...PerkinElmer, Inc.
The document describes a dual-color AlphaScreen/AlphaLISA assay that allows simultaneous monitoring of protein phosphorylation and protein-protein interactions. As a proof of concept, the assay was used to observe dissociation of ERK2 from MEK1 upon phosphorylation by MEK1. Distinct phosphorylation-interaction patterns were observed for different kinase-substrate pairs in the ERK MAP kinase pathway. The assay was also used to compare the selectivity and mechanism of action of three MAP kinase phosphatases on ERK2 and p38α, and to show that an ATP-competitive inhibitor and allosteric inhibitor of MEK1-ERK2 interaction have distinct effects.
This presentation from IVT Network's Method Validation Conference covers required and suggested regulations and guidances for biological process specifications. It also covers dosage form considerations and specifications for other components.
1) Human intestinal bacteria can convert naturally-occurring plant compounds called phytoestrogens into estrogenic compounds. 2) Studies found lower rates of breast and prostate cancer in Japan and Finland where diets include soybeans and rye bread containing phytoestrogens. 3) These phytoestrogens structurally resemble the human hormone estradiol and can have estrogenic or anti-estrogenic effects depending on blood concentrations.
The document examines the proteomic response of Saccharomyces cerevisiae to hydrogen peroxide induced oxidative stress. Twelve protein spots were analyzed using mass spectrometry, with one spot identified as the protein Sah1. Sah1 is involved in the transmethylation metabolic pathway, which produces glutathione to relieve oxidative stress. Exposure to hydrogen peroxide increased the levels of Sah1, likely to increase glutathione production and combat the reactive oxygen species. Proteomics allows the study of entire protein networks and interactions, helping uncover proteins' functions during stress responses.
Year 12 biology early comm presentation intro onlyRachelCaico
This document contains information for students taking an early commencement biology course, including:
1. An outline of the contents of the course handbook, which includes the textbook, worksheets, presentations, and assessment information.
2. Details of the two biology exams for Units 3 and 4, which will assess students' understanding of key knowledge and skills through a series of questions.
3. An overview of the two areas of study in Unit 3 - Molecules of Life and Detecting & Responding. It lists the key topics to be covered and outcomes to be assessed for each area of study.
4. Details of the school-assessed coursework and examination that make up the 17
This document summarizes a study that used label-free LC-MS/MS to simultaneously identify and quantify proteins in E. coli grown in different carbon sources (glucose, lactose, acetate). The methodology involved growing E. coli in different media, extracting and digesting proteins, and performing LC-MS/MS analysis using alternating low and elevated collision energies to obtain precursor and fragment ion data. Over 7,000 accurate mass measurements of precursors and 25,000 of fragments were obtained. Multiple peptides were identified for relative protein quantitation. Results showed differential expression of proteins involved in carbon utilization pathways between the growth conditions. The label-free quantitation was consistent with other omics methods.
1) Aspartame degradation kinetics depend on factors like pH, temperature, buffer type and concentration, and water activity. Higher temperatures, pH, buffer concentrations and water activities increase degradation rates.
2) The activation energies for aspartame degradation decrease with increasing pH or moisture content. Phosphate buffer significantly enhances degradation more than citrate buffer.
3) In solid systems, degradation rates increase with higher initial buffer concentrations and water activities. However, the glass transition temperature does not influence degradation rates as much as water activity.
This document discusses several controversies in Alzheimer's disease research and treatment approaches. It notes that β-amyloid deposits are often found diffusely in normal elderly individuals without cognitive impairment. Both amyloid and tau appear necessary for amyloid oligomers to induce neuronal changes and dementia. While recent drug trials failed, the document argues that targeting earlier mild disease stages and testing multiple candidates may lead to success in the future.
Simultaneious monitoring of phosphorylation events and protein protein intera...PerkinElmer, Inc.
The document describes a dual-color AlphaScreen/AlphaLISA assay that allows simultaneous monitoring of protein phosphorylation and protein-protein interactions. As a proof of concept, the assay was used to observe dissociation of ERK2 from MEK1 upon phosphorylation by MEK1. Distinct phosphorylation-interaction patterns were observed for different kinase-substrate pairs in the ERK MAP kinase pathway. The assay was also used to compare the selectivity and mechanism of action of three MAP kinase phosphatases on ERK2 and p38α, and to show that an ATP-competitive inhibitor and allosteric inhibitor of MEK1-ERK2 interaction have distinct effects.
This presentation from IVT Network's Method Validation Conference covers required and suggested regulations and guidances for biological process specifications. It also covers dosage form considerations and specifications for other components.
IJERA (International journal of Engineering Research and Applications) is International online, ... peer reviewed journal. For more detail or submit your article, please visit www.ijera.com
Pharmacodynamics By Dr Debasish Pradhangundu333pappu
This document discusses pharmacodynamics and the mechanisms of drug action. It describes how drugs can act through physical/chemical properties, stimulation, depression, irritation, replacement or cytotoxic effects. However, most drugs act by interacting with biomolecules like enzymes, ion channels, transporters or receptors. The four main types of receptor-mediated drug actions are agonism, antagonism, partial agonism, and inverse agonism. Downstream effects are mediated through four major transduction pathways: G-protein coupled receptors, receptors with intrinsic ion channels, enzyme-linked receptors, and transcription factors.
This presentation has been moved. To view this presentation, please visit http://pubs.acs.org/iapps/liveslides/pages/index.htm?mscNo=jz300725d
Vibrational Circular Dichroism Shows Reversible Helical Handedness Switching in Peptidomimetic lValine Fibrils
This document summarizes a study on a new class of shape memory polymers based on liquid crystalline elastomers bearing cholesterol mesogens. The polymers were prepared via ring opening metathesis polymerization and exhibited shape memory behavior upon thermal stimulus due to their interdigitated smectic A structure. The polymers demonstrated tunable glass transition and clearing temperatures, making them promising candidates for biomedical applications requiring shape memory at body temperature. Thermal crosslinking was shown to control the liquid crystalline properties and transition temperatures.
The document describes tools and methods for screening compounds to find effective drugs for anxiety and depression. A typical screening process involves chemical synthesis of compounds, followed by screening assays to test binding and functional activity. Data is analyzed to select hit compounds, which then undergo further testing through ex vivo occupancy studies, in vitro ADME assays, and in vivo safety and efficacy models. Key methods discussed include radioligand binding assays to test if compounds compete for the same binding site as labeled ligands, and saturation binding assays to determine receptor affinity (Kd) and maximum binding (Bmax). Comparing results between species and receptor subtypes can provide insights into a compound's potential and selectivity.
The fabrication of stimuli-responsive, multifunctional proteins comprised of self-assembling domains capable of forming defined nanometre scale structures has tremendous application in drug delivery. This coupled to inorganic material like Gold nanoparticles (GNP’s) can facilitate external triggers controlling binding and release of embedded agents within the self-assembling materials. This renders smart biomaterial suitable for drug delivery.
Determination of the Gas-Phase Acidities of the Cysteine-Polyglycine Peptideskiran_uoh
ASMS 2008 Poster:
• The gas-phase acidities of eighteen cysteinepolyglycine
peptides were determined using
the extended kinetic method. The entropy
factor is important in these systems.
• The gas-phase acidity of the cysteine residue
increases systematically with the increase in
the length of the peptide.
• It is worth mentioning that the CGn peptides are
more acidic than the corresponding GnC
peptides.
The document describes the synthesis of [13C]-OTZ, a cysteine prodrug labeled with carbon-13, for use in magnetic resonance imaging studies of drug uptake and conversion to glutathione in rat brain. Researchers reacted L-[3-13C]-cysteine and triphosgene under basic conditions to produce [13C]-OTZ in 68-79% yield. Analysis showed the product was pure based on melting point and IR spectroscopy. Preliminary in vivo NMR studies in rats showed [13C]-OTZ is taken up in the brain and converts to labeled glutathione and other metabolites, allowing further studies on its metabolic pathway.
This document summarizes a study on using a hydrogel depot to deliver small and large biomolecules via light-triggered degradation. The hydrogel is composed of a PEG macromer containing photodegradable disulfide bonds. Glutathione, lysozyme, BSA, and TGF-β1 were incorporated into the hydrogel either via pre-gelation exchange of an accessible cysteine, or post-gelation exchange for lysozyme. Exposure to 365nm light degraded the hydrogel and released the molecules. Lysozyme and BSA retained enzymatic activity, and released TGF-β1 induced GAG production in human mesenchymal stem cells, demonstrating controlled light-triggered release of
INTRODUCTION
STRUCTURAL PROTEOMICS
WHAT IS THE IMPORTANCE OF STUDY OF PROTEIN
METHODS FOR SOLVING PROTEIN STRUCTURE
1. X- RAY CRYSTALLOGRAPHY
INTRODUCTION
PROCEDURE
LIMITATIONS
2.NUCLEAR MAGNETIC RESONANCE
PROTEIN STRUCTURE DETERMINATION
3. MASS SPECTROMETER
MALDI
ESI
STRUCTURE MODELING
APPLICATIONS
CONCLUSION
REFERENCES
Chemical protein engineering synthetic and semisyntheticAli Hatami
This document summarizes various methods for chemically synthesizing and modifying peptides and proteins. It discusses solid phase peptide synthesis, native chemical ligation using peptide thioesters, and fragment condensation strategies. It also covers chemoselective ligations using oxime and hydrazone bonds and decarboxylative amide formation. Additionally, the document outlines chemical modifications like PEGylation, phosphorylation, and backbone modifications. Finally, it examines enzyme-mediated ligation techniques like sortase and biotin ligase that can link proteins and peptides in a sequence-specific manner.
- The organic solvent acetonitrile inhibited EROD activity by approximately 22%, but had no effect on PROD activity. Neither enzyme activity was inhibited by DMSO, which was used in all experiments.
- DCPO, which contains a 2,4-oxazolidinedione ring, inhibited EROD and PROD activity to the same extent (ca. 30%), similar to the known CYP inhibitor metyrapone.
- The sulfur containing compounds DCPT and 4-DCTD were effective inhibitors (≥50%) of both enzyme activities. DCPT inhibited PROD more than EROD, while 4-DCTD inhibited EROD more than PROD, suggesting they exhibit
La0150 b arthrex biocomposite white paper - ibdrnaula
The document summarizes a new bioabsorbable composite interference screw developed by Arthrex for ACL and PCL reconstruction. The screw is composed of 70% poly(L-lactide-co-D,L-lactide) polymer and 30% biphasic calcium phosphate ceramic. Testing showed the screw had similar mechanical properties, biocompatibility, and degradation rate as competing screws. Animal studies demonstrated new bone formation and integration at the bone interface when using the composite screw.
Introduction
Classification
Therapeutic values of peptidomimetics
Design of peptidomimetics by manipulation of amino acids
Modification of peptide backbone
Chemistry of prostaglandins, leukotrienes and thromboxanes
XTEN conjugates provide rapid access to many high-value product formats including antibody-XTEN-drug conjugates, peptide-XTEN-drug conjugates, and multifunctional conjugates. XTEN can be customized based on polymer length, conjugation site type and number, and coupling chemistry. Conjugation to XTEN is highly efficient (>90%) and homogeneous based on HPLC and mass spectrometry analysis. XTEN conjugates demonstrate similar pharmacokinetics to non-conjugated versions in animal studies. XTEN is expected to be manufactured at commercial scale at lower cost than PEG, with advantages including biodegradability and a defined single molecular species.
Benzodiazepines are a class of drugs with a core chemical structure consisting of a benzene ring attached to a diazepine ring. Different benzodiazepines are variations on this core structure due to chemical substitutions at two positions. The duration of action of individual benzodiazepines depends on their half-life and metabolic fate.
XTEN is a protein polymer composed of natural amino acids that mimics the properties of PEG. It has a precisely controlled sequence encoded in DNA that can be produced at large scale through fermentation. XTEN is biodegradable, has no risk of kidney vacuolation, and produces no toxic metabolites. It has versatility in genetic fusions and chemical conjugations. XTEN meets goals of long serum half-life, stability in plasma, intracellular degradation, high expression level, genetic stability, and lack of non-specific binding or aggregation.
Plasminogen activator inhibitor-1 (PAI-1) is a serine protease inhibitor that regulates fibrinolysis. It functions by inhibiting tissue-type plasminogen activator (tPA) and urokinase-type plasminogen activator (uPA). PAI-1 exists in both an active conformation that can inhibit tPA/uPA and a latent inactive conformation. Several small molecule inhibitors have been developed that target the active site of PAI-1 and accelerate its conversion to the latent state. These inhibitors typically contain both carboxylic acid and aromatic groups important for binding to PAI-1's hydrophobic cleft near residues Phe114 and Val121. However, no P
This document discusses newer concepts in the renin-angiotensin-aldosterone system (RAAS), including tissue and cardiac RAAS. It describes how the RAAS was traditionally viewed as circulating in the bloodstream, but is now understood to also exist locally in tissues. Local tissue RAAS can generate angiotensin II independently of circulating RAAS through local synthesis of angiotensinogen and renin. Inhibition of tissue RAAS provides benefits like reducing endothelial dysfunction, vascular damage, and organ damage in the heart and kidneys.
IJERA (International journal of Engineering Research and Applications) is International online, ... peer reviewed journal. For more detail or submit your article, please visit www.ijera.com
Pharmacodynamics By Dr Debasish Pradhangundu333pappu
This document discusses pharmacodynamics and the mechanisms of drug action. It describes how drugs can act through physical/chemical properties, stimulation, depression, irritation, replacement or cytotoxic effects. However, most drugs act by interacting with biomolecules like enzymes, ion channels, transporters or receptors. The four main types of receptor-mediated drug actions are agonism, antagonism, partial agonism, and inverse agonism. Downstream effects are mediated through four major transduction pathways: G-protein coupled receptors, receptors with intrinsic ion channels, enzyme-linked receptors, and transcription factors.
This presentation has been moved. To view this presentation, please visit http://pubs.acs.org/iapps/liveslides/pages/index.htm?mscNo=jz300725d
Vibrational Circular Dichroism Shows Reversible Helical Handedness Switching in Peptidomimetic lValine Fibrils
This document summarizes a study on a new class of shape memory polymers based on liquid crystalline elastomers bearing cholesterol mesogens. The polymers were prepared via ring opening metathesis polymerization and exhibited shape memory behavior upon thermal stimulus due to their interdigitated smectic A structure. The polymers demonstrated tunable glass transition and clearing temperatures, making them promising candidates for biomedical applications requiring shape memory at body temperature. Thermal crosslinking was shown to control the liquid crystalline properties and transition temperatures.
The document describes tools and methods for screening compounds to find effective drugs for anxiety and depression. A typical screening process involves chemical synthesis of compounds, followed by screening assays to test binding and functional activity. Data is analyzed to select hit compounds, which then undergo further testing through ex vivo occupancy studies, in vitro ADME assays, and in vivo safety and efficacy models. Key methods discussed include radioligand binding assays to test if compounds compete for the same binding site as labeled ligands, and saturation binding assays to determine receptor affinity (Kd) and maximum binding (Bmax). Comparing results between species and receptor subtypes can provide insights into a compound's potential and selectivity.
The fabrication of stimuli-responsive, multifunctional proteins comprised of self-assembling domains capable of forming defined nanometre scale structures has tremendous application in drug delivery. This coupled to inorganic material like Gold nanoparticles (GNP’s) can facilitate external triggers controlling binding and release of embedded agents within the self-assembling materials. This renders smart biomaterial suitable for drug delivery.
Determination of the Gas-Phase Acidities of the Cysteine-Polyglycine Peptideskiran_uoh
ASMS 2008 Poster:
• The gas-phase acidities of eighteen cysteinepolyglycine
peptides were determined using
the extended kinetic method. The entropy
factor is important in these systems.
• The gas-phase acidity of the cysteine residue
increases systematically with the increase in
the length of the peptide.
• It is worth mentioning that the CGn peptides are
more acidic than the corresponding GnC
peptides.
The document describes the synthesis of [13C]-OTZ, a cysteine prodrug labeled with carbon-13, for use in magnetic resonance imaging studies of drug uptake and conversion to glutathione in rat brain. Researchers reacted L-[3-13C]-cysteine and triphosgene under basic conditions to produce [13C]-OTZ in 68-79% yield. Analysis showed the product was pure based on melting point and IR spectroscopy. Preliminary in vivo NMR studies in rats showed [13C]-OTZ is taken up in the brain and converts to labeled glutathione and other metabolites, allowing further studies on its metabolic pathway.
This document summarizes a study on using a hydrogel depot to deliver small and large biomolecules via light-triggered degradation. The hydrogel is composed of a PEG macromer containing photodegradable disulfide bonds. Glutathione, lysozyme, BSA, and TGF-β1 were incorporated into the hydrogel either via pre-gelation exchange of an accessible cysteine, or post-gelation exchange for lysozyme. Exposure to 365nm light degraded the hydrogel and released the molecules. Lysozyme and BSA retained enzymatic activity, and released TGF-β1 induced GAG production in human mesenchymal stem cells, demonstrating controlled light-triggered release of
INTRODUCTION
STRUCTURAL PROTEOMICS
WHAT IS THE IMPORTANCE OF STUDY OF PROTEIN
METHODS FOR SOLVING PROTEIN STRUCTURE
1. X- RAY CRYSTALLOGRAPHY
INTRODUCTION
PROCEDURE
LIMITATIONS
2.NUCLEAR MAGNETIC RESONANCE
PROTEIN STRUCTURE DETERMINATION
3. MASS SPECTROMETER
MALDI
ESI
STRUCTURE MODELING
APPLICATIONS
CONCLUSION
REFERENCES
Chemical protein engineering synthetic and semisyntheticAli Hatami
This document summarizes various methods for chemically synthesizing and modifying peptides and proteins. It discusses solid phase peptide synthesis, native chemical ligation using peptide thioesters, and fragment condensation strategies. It also covers chemoselective ligations using oxime and hydrazone bonds and decarboxylative amide formation. Additionally, the document outlines chemical modifications like PEGylation, phosphorylation, and backbone modifications. Finally, it examines enzyme-mediated ligation techniques like sortase and biotin ligase that can link proteins and peptides in a sequence-specific manner.
- The organic solvent acetonitrile inhibited EROD activity by approximately 22%, but had no effect on PROD activity. Neither enzyme activity was inhibited by DMSO, which was used in all experiments.
- DCPO, which contains a 2,4-oxazolidinedione ring, inhibited EROD and PROD activity to the same extent (ca. 30%), similar to the known CYP inhibitor metyrapone.
- The sulfur containing compounds DCPT and 4-DCTD were effective inhibitors (≥50%) of both enzyme activities. DCPT inhibited PROD more than EROD, while 4-DCTD inhibited EROD more than PROD, suggesting they exhibit
La0150 b arthrex biocomposite white paper - ibdrnaula
The document summarizes a new bioabsorbable composite interference screw developed by Arthrex for ACL and PCL reconstruction. The screw is composed of 70% poly(L-lactide-co-D,L-lactide) polymer and 30% biphasic calcium phosphate ceramic. Testing showed the screw had similar mechanical properties, biocompatibility, and degradation rate as competing screws. Animal studies demonstrated new bone formation and integration at the bone interface when using the composite screw.
Introduction
Classification
Therapeutic values of peptidomimetics
Design of peptidomimetics by manipulation of amino acids
Modification of peptide backbone
Chemistry of prostaglandins, leukotrienes and thromboxanes
XTEN conjugates provide rapid access to many high-value product formats including antibody-XTEN-drug conjugates, peptide-XTEN-drug conjugates, and multifunctional conjugates. XTEN can be customized based on polymer length, conjugation site type and number, and coupling chemistry. Conjugation to XTEN is highly efficient (>90%) and homogeneous based on HPLC and mass spectrometry analysis. XTEN conjugates demonstrate similar pharmacokinetics to non-conjugated versions in animal studies. XTEN is expected to be manufactured at commercial scale at lower cost than PEG, with advantages including biodegradability and a defined single molecular species.
Benzodiazepines are a class of drugs with a core chemical structure consisting of a benzene ring attached to a diazepine ring. Different benzodiazepines are variations on this core structure due to chemical substitutions at two positions. The duration of action of individual benzodiazepines depends on their half-life and metabolic fate.
XTEN is a protein polymer composed of natural amino acids that mimics the properties of PEG. It has a precisely controlled sequence encoded in DNA that can be produced at large scale through fermentation. XTEN is biodegradable, has no risk of kidney vacuolation, and produces no toxic metabolites. It has versatility in genetic fusions and chemical conjugations. XTEN meets goals of long serum half-life, stability in plasma, intracellular degradation, high expression level, genetic stability, and lack of non-specific binding or aggregation.
Plasminogen activator inhibitor-1 (PAI-1) is a serine protease inhibitor that regulates fibrinolysis. It functions by inhibiting tissue-type plasminogen activator (tPA) and urokinase-type plasminogen activator (uPA). PAI-1 exists in both an active conformation that can inhibit tPA/uPA and a latent inactive conformation. Several small molecule inhibitors have been developed that target the active site of PAI-1 and accelerate its conversion to the latent state. These inhibitors typically contain both carboxylic acid and aromatic groups important for binding to PAI-1's hydrophobic cleft near residues Phe114 and Val121. However, no P
This document discusses newer concepts in the renin-angiotensin-aldosterone system (RAAS), including tissue and cardiac RAAS. It describes how the RAAS was traditionally viewed as circulating in the bloodstream, but is now understood to also exist locally in tissues. Local tissue RAAS can generate angiotensin II independently of circulating RAAS through local synthesis of angiotensinogen and renin. Inhibition of tissue RAAS provides benefits like reducing endothelial dysfunction, vascular damage, and organ damage in the heart and kidneys.
My phD work Title "INVESTIGATION INTO THE MECHANISM OF ACTION OF CARDIOVASCUL...Hitesh Soni
Project Guide: Professor Anita A. Mehta ; The Best Project Guide I have ever seen.
Special Thanks to Dr. Mukul R Jain (Senior VP, Zydus Research Center) for continuous support. Thanks to Dr. Ajay Sharma (Associate Professor, Mason Eye Institute, USA) for concept building and giving training for Langendorrf's isolated heart experiments.
The document provides an overview of the renin-angiotensin-aldosterone system (RAAS). It discusses the classical components of RAAS including renin, angiotensinogen, angiotensin peptides, angiotensin receptors, and angiotensin converting enzyme. It also covers newer concepts such as local tissue RAAS, intracellular RAAS, receptor heterodimerization, and the roles of angiotensin converting enzyme 2 and angiotensin (1-7). The document highlights functions of RAAS in various organs and pathophysiological processes.
The document discusses the renin-angiotensin system (RAS) and its relationship to various cardiovascular conditions. It describes the different receptors in the RAS, including AT1, AT2, AT4, and mas receptors. It then examines how RAS inhibition has been shown to reduce left ventricular hypertrophy, prevent new-onset atrial fibrillation, reduce stroke risk, inhibit atherosclerosis, and decrease the incidence of new-onset diabetes. The RAS plays an important role in these conditions through mechanisms like vasoconstriction, inflammation, oxidative stress, and fibrosis. Clinical trials provide evidence that blocking the RAS with ACE inhibitors or ARBs can help lower the risk of associated cardiovascular events
The renin-angiotensin-aldosterone system (RAAS) is activated when arterial pressure decreases. Renin is released by the kidneys and converts angiotensinogen to angiotensin I. Angiotensin I is then converted to angiotensin II by angiotensin converting enzyme (ACE), mostly in the lungs. Angiotensin II stimulates aldosterone release from the adrenal cortex and causes vasoconstriction. This increases blood volume and arterial pressure through sodium and water retention and raised peripheral resistance.
This document summarizes fibrinolytics and antiplatelet drugs. It describes the fibrinolytic system and how fibrinolytics like streptokinase, urokinase, alteplase work to activate plasminogen and lyse clots. Newer fibrinolytics like reteplase and tenecteplase are discussed. Antiplatelet drugs discussed include aspirin, dipyridamole, clopidogrel, abciximab and how they inhibit platelet aggregation by blocking TXA2 synthesis, increasing cAMP, or blocking ADP/GP-IIb-IIIa receptors. Their uses for coronary artery disease and procedures are highlighted.
This Presentation tries to make understand the System which plays a role in increasing Blood Pressure-Renin Angiotensin System & How the drugs and inhibiting Enzymes prevent this BP rise...
Blood clots can cause serious medical issues if they block arteries or veins. Thrombolytic drugs work by activating plasminogen into plasmin, an enzyme that breaks down fibrin in clots. The three main types of thrombolytic drugs are streptokinase, urokinase, and tissue plasminogen activators (TPA). While all three work to break down clots, TPA is more specific to clots and has fewer side effects than the other drugs. Thrombolytic drugs are used to treat conditions like heart attacks, strokes, and pulmonary embolisms but have risks of bleeding if overused or in the wrong patients.
Fibrinolytics, also known as thrombolytics, work to dissolve blood clots and are used to treat conditions like heart attacks, deep vein thrombosis, and pulmonary embolism. The main fibrinolytic agents discussed are streptokinase, tissue plasminogen activator (t-PA), and its variants reteplase and tenecteplase. These work by activating plasminogen and converting it to plasmin to break down fibrin clots. Their use comes with risks of hemorrhage, so antifibrinolytic drugs like tranexamic acid and aminocaproic acid are used to reduce bleeding when fibrinolytics are given.
Myocardial infarction, commonly known as a heart attack, occurs when blood flow to the heart is blocked, preventing oxygen and nutrients from reaching heart muscle tissue. Over time, plaque can build up in the coronary arteries and restrict blood flow, potentially causing a heart attack. Symptoms of a heart attack include chest pain, shortness of breath, nausea and more. Treatment focuses on restoring blood flow through clot-busting drugs or angioplasty to limit heart muscle damage. Lifestyle changes like quitting smoking, eating healthy, and exercise can help prevent heart attacks.
This document discusses metabolic syndrome, which is a cluster of risk factors for heart disease that includes diabetes, obesity, high cholesterol, and high blood pressure. It notes the increasing prevalence of metabolic syndrome in children and adolescents. While there is no consensus on diagnosing metabolic syndrome in younger populations, most agree that having two or more of the following constitutes metabolic syndrome: insulin resistance, elevated cholesterol/triglycerides, low HDL, obesity, and high blood pressure. The document focuses on insulin resistance as a unifying mechanism, exploring its relationship to excess fat, especially visceral fat, and adipocytokines like adiponectin that impact inflammation and insulin sensitivity.
This document provides an overview of acute myocardial infarction (MI), also known as a heart attack. It discusses the definition, causes, risk factors, pathogenesis, classification, diagnosis and management of MI. The diagnosis involves taking a patient history, examining signs and symptoms, electrocardiography, serum analysis and echocardiography. Management is staged and involves pre-hospital, emergency department and post-discharge care, with a focus on reperfusing the blocked artery as quickly as possible, such as through percutaneous coronary intervention or thrombolytic therapy. The goal is to correctly identify the type of MI, treat the patient according to guidelines and manage any complications.
Myocardial infarction, or a heart attack, occurs when blood flow to the heart is blocked, usually by a clot, damaging heart muscle. It can cause chest pain and is diagnosed through electrocardiograms, cardiac enzyme levels, and other tests. Over time, the damaged heart muscle is replaced with scar tissue through a healing process. Complications can include arrhythmias, heart failure, blood clots, or rupture of the heart muscle. Treatment involves lifestyle changes, medications, or procedures like stenting or bypass surgery to restore blood flow.
This document provides information on acute myocardial infarction (AMI), commonly known as a heart attack. It defines AMI as the irreversible necrosis of heart muscle tissue due to prolonged lack of oxygen. AMI is typically caused by a blockage in one of the coronary arteries, reducing blood supply to the heart. The document discusses the epidemiology, risk factors, pathophysiology, signs and symptoms, diagnosis, management, prevention, and classification of AMI. It emphasizes the importance of rapidly restoring blood flow to limit damage to heart muscle.
Myocardial infarction, also known as a heart attack, results from a critical imbalance between oxygen supply and demand in the heart muscle. The primary cause is coronary artery occlusion due to atherosclerosis, vasospasm, or embolism. Symptoms may include chest pain, dyspnea, sweating, and anxiety. Diagnosis is made based on elevated cardiac enzyme levels and ECG changes. Initial treatment focuses on pain relief, oxygen, fluids, and aspirin while long-term prevention includes medications like beta-blockers, ACE inhibitors, antiplatelets, and statins to reduce risk of future heart attacks and heart failure.
This document summarizes the pathophysiology, risk factors, clinical manifestations, diagnostic evaluations, assessment factors, possible nursing diagnoses, care plan, and interventions for myocardial infarction. It discusses how myocardial infarction occurs due to a blockage or reduced blood flow to the heart muscle that damages the heart tissue. Common risk factors include age, gender, high blood pressure, smoking, and oral contraceptive use. Signs and symptoms include chest pain, shortness of breath, nausea, and more. Diagnostic tests include electrocardiograms, echocardiograms, and serum enzyme and isoenzyme levels. Nursing focuses on pain relief, preventing further damage, maintaining perfusion and respiratory function through interventions like oxygen, medications, and education.
Myocardial infarction occurs when blood flow to the heart is obstructed, causing death of heart muscle tissue. It is usually caused by atherosclerosis leading to coronary artery occlusion. Risk factors include conditions like diabetes, smoking, high cholesterol, and family history. Symptoms include chest pain and potential complications are arrhythmias, heart failure, or cardiac rupture. Diagnosis involves cardiac enzyme and troponin levels, electrocardiogram, and other imaging tests. Treatment focuses on restoring blood flow, reducing risk factors, managing pain and symptoms, and monitoring for complications.
The Role Of G Protein Coupled ReceptorssAngela Hays
- G protein-coupled receptors (GPCRs) are seven transmembrane receptors located on cell surfaces that play an important role in intracellular signaling pathways and crucial physiological processes.
- When a ligand binds to a GPCR, it activates a heterotrimeric G protein within the cell. This leads to the production of second messengers like DAG and IP3, which mediate different cellular functions such as muscle contraction.
- The IP3 receptor releases intracellular calcium stores when bound by IP3, increasing cytosolic calcium levels and activating calcium-dependent signaling pathways.
Optimization of Bacillus Subtilis Natto Immobilization Process on Alginate – ...inventionjournals
Nattokinase is a potent fibrinolytic enzyme with the potential for fighting cardiovascular diseases. In this study, Bacillus subtilis natto were immobilized in the alginate – chitosan complex for fermentation of nattokinase enzyme. Six factors affecting the efficiency of immobilization cells were screened by Plackett – Burman design including: concentration of alginate, concentration of chitosan, pH of chitosan, concentration of CaCl2, added cells density, shaking time after supplementing chitosan. Results of optimization have identified two factors affecting the efficiency of cell immobilization. They are concentration of alginate (2.5%) and added cells density (approximately 5.86 million colonies per milliliter). With these two factors optimized and others kept at the normal level, immobilization efficiency reached 90.73%. After Bacillus subtilis natto had been immobilized by optimization of parameters, we conducted application for fermenting nattokinase. For 24 hours of fermentation, nattokinase enzyme activity reached 71.80 ± 0.19 FU/ml. Immobilized Bacillus subtilis natto cells were reused 6 times and on the 6 th time of reuse, nattokinase enzyme activity only decreased 2.7% in compared with the 1st reuse.
Optimization of Bacillus Subtilis Natto Immobilization Process on Alginate – ...inventionjournals
Nattokinase is a potent fibrinolytic enzyme with the potential for fighting cardiovascular diseases. In this study, Bacillus subtilis natto were immobilized in the alginate – chitosan complex for fermentation of nattokinase enzyme. Six factors affecting the efficiency of immobilization cells were screened by Plackett – Burman design including: concentration of alginate, concentration of chitosan, pH of chitosan, concentration of CaCl2, added cells density, shaking time after supplementing chitosan. Results of optimization have identified two factors affecting the efficiency of cell immobilization. They are concentration of alginate (2.5%) and added cells density (approximately 5.86 million colonies per milliliter). With these two factors optimized and others kept at the normal level, immobilization efficiency reached 90.73%. After Bacillus subtilis natto had been immobilized by optimization of parameters, we conducted application for fermenting nattokinase. For 24 hours of fermentation, nattokinase enzyme activity reached 71.80 ± 0.19 FU/ml. Immobilized Bacillus subtilis natto cells were reused 6 times and on the 6 th time of reuse, nattokinase enzyme activity only decreased 2.7% in compared with the 1st reuse.
The kidneys filter blood every 5 minutes, exposing glomerular cells to constant stimuli. The document discusses communication between glomerular cells, specifically podocytes, which is essential for proper glomerular function. Studies show podocytes resemble neurons and possess glutamatergic vesicles containing Rab3A. Blocking NMDA receptors in vitro and in vivo impairs podocytes and increases albumin permeability, suggesting glutamate signaling regulates podocyte homeostasis.
The document discusses antibiotics, including their sources, roles, classification, and mechanisms of action. It focuses on several classes of antibiotics that act by inhibiting bacterial cell wall synthesis or protein synthesis. It describes how penicillins and cephalosporins inhibit the final stage of peptidoglycan synthesis in bacterial cell walls. It also discusses how other drugs like glycopeptides, fosfomycins, and aminoglycosides act on bacterial cell components and physiological processes. The classification, mechanisms of action and spectra of several classes of protein synthesis inhibitors are outlined as well.
This document discusses antibiotics, including their sources, roles, mechanisms of action, and classifications. It describes the main types and classes of antibiotics, focusing on their targets in bacteria and how they inhibit critical processes like cell wall synthesis, protein synthesis, membrane function, and nucleic acid synthesis. Key points include: antibiotics can be naturally produced by microorganisms or synthetically produced, and are classified based on their structure, function, and spectrum of activity. The major classes discussed are inhibitors of cell wall synthesis (beta-lactams, glycopeptides, fosfomycins), protein synthesis (aminoglycosides, macrolides, tetracyclines), membrane function (polymyxins), antimetabolites
This document compares the properties of five natural acetogenins from the Annonaceae plant family as inhibitors of mitochondrial Complex I, the enzyme NADH dehydrogenase, and compares them to the classical inhibitors rotenone and piericidin. Two of the acetogenins, rolliniastatin-1 and rolliniastatin-2, are more potent inhibitors of Complex I than piericidin in terms of inhibitory constant and protein dependence. Rolliniastatin-2 interacts with Complex I in a way that is mutually exclusive with piericidin but not rotenone, making it the first known potent Complex I inhibitor with a binding site distinct from rotenone.
Rational drug design begins by identifying a biological target implicated in disease. Drugs are then designed to modulate this target's activity in order to treat the disease. For a target to be suitable, there must be evidence it is disease-relevant and capable of binding small molecules. Once identified, the target is cloned, expressed, and purified. This allows high-throughput screening of chemical libraries to identify candidates that modify the target. Successful candidates should have properties predicting oral availability and low toxicity. Prodrugs and combinatorial chemistry are approaches that can improve drug properties and efficiency of discovery.
Poster - RNAi Therapeutics by Silence Therapeutics - American Society of Cli...Silence Therapeutics
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This document summarizes a study investigating whether delivering the neuroprotective protein progranulin (PGRN) to motor neurons via lentivirus-mediated gene therapy can prevent motor neuron loss in a mouse model of ALS. PGRN has shown neuroprotective effects in other studies. The researchers injected PGRN-expressing or control lentiviruses into the leg muscles of transgenic ALS mice and wildtype mice before disease onset. Preliminary results show PGRN protects neurons in cell culture and may reduce motor neuron loss when delivered late in disease in mice. Ongoing work will assess effects on neuroinflammation and behavior as disease progresses. The goal is to determine if PGRN gene therapy can prophyl
This document discusses materials and methods used in a study involving the chemical fipronil and zinc. Twenty male albino rats were divided into four groups of five rats each: a control group, a zinc group that received zinc supplementation, a fipronil group exposed to the insecticide fipronil, and a combination group exposed to both zinc and fipronil. Biochemical assays were conducted to assess oxidative stress markers like superoxide dismutase, catalase, glutathione peroxidase, glutathione-S-transferase, glutathione, lipid peroxidation, and total protein in the rats. Chemicals used including fipronil and zinc sulfate were obtained from reputable suppliers. Kits for the biochemical assays were purchased from a diagnostic
This document discusses structure-activity relationships (SAR) through examples of different drug molecules. It provides details on the chemical structures of camptothecin (CPT), taxol, and the flavonoid quercetin and how specific structural features relate to their biological activities. For CPT, rings A-D and the stereochemistry at C-20 are essential for anti-tumor activity, while modifications to rings C and D eliminate activity. The ester linkage and phenylisoserine chain of taxol are required for its anticancer effects. For flavonoids like quercetin, features important for radical scavenging include a catechol structure in ring B and hydroxyl groups that enable hydrogen bonding and electron de
lehninger(sixth edition) Ch 03: Amino acids, peptides and proteinskrupal parmar
1. The document discusses various methods for purifying proteins, including ammonium sulfate fractionation, dialysis, column chromatography techniques like ion exchange and size exclusion, and electrophoresis methods like SDS-PAGE and 2D gels.
2. Key steps in protein purification include assaying fractions to determine total protein and specific activity in order to calculate purification fold. Purity can be evaluated using electrophoresis.
3. Molecular techniques for protein purification involve expressing a recombinant fusion protein, lysing cells, and using affinity chromatography based on the fusion tag to purify the protein before cleaving off the tag.
This document discusses tracing the evolution of the human body through analyzing the chemical evolution of proteins and other molecules in the body over time. It notes that tracking changes in conserved proteins that control fundamental processes, like the Pax6 gene which regulates eye development, can reveal how closely related different organisms are. It recommends using the human arrestin protein sequence as an example, performing BLAST searches to find the arrestin sequence in the human genome and other organism genomes, then aligning the protein sequences to compare percentages and determine evolutionary relationships.
Similar to 2010 Eastern Michigan University Graduate Symposium (14)
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ISO/IEC 27001, ISO/IEC 42001, and GDPR: Best Practices for Implementation and...PECB
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Date: May 29, 2024
Tags: Information Security, ISO/IEC 27001, ISO/IEC 42001, Artificial Intelligence, GDPR
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it describes the bony anatomy including the femoral head , acetabulum, labrum . also discusses the capsule , ligaments . muscle that act on the hip joint and the range of motion are outlined. factors affecting hip joint stability and weight transmission through the joint are summarized.
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RHEOLOGY Physical pharmaceutics-II notes for B.pharm 4th sem students
2010 Eastern Michigan University Graduate Symposium
1. Examination of the Structure-Activity Relationships of Inhibitors of Plasminogen Activator Inhibitor-1
Structure- Inhibitor-
Karen L. Sanders,1 Hasina Saraha,1 Mark Warnock,2 Jacqueline M. Cale,2 Daniel A. Lawrence,2 and Cory D. Emal1*; (1) Chemistry
Department, Eastern Michigan University, Ypsilanti, 48197; (2) Department of Internal Medicine, University of Michigan Medical
School, Ann Arbor, MI, 48109
Introduction/Background Common Structural Themes Inhibition Results
The inhibition of plasminogen activator-inhibitor-1 (PAI-1) is Many of the compounds displaying PAI-1 inhibition contain gallate or Effect of modifying the gallate to a protocatechuate on PAI-1 inhibition:
anticipated to increase our understanding of various human ailments digallate groups. The focus of our research has been centered on the
including diabetes, stroke, and atherosclerosis, for which high levels of structure-activity relationship of different configurations of polyphenols.
PAI-1 have been associated.(1) PAI-1 prevents certain serine proteases This includes the manipulation of the carbamate handle and the number and
from cleaving peptide bonds and thus is able to regulate various cellular position of the hydroxyl groups on the inhibitory molecules. IC50 = 0.105 µm
processes such as controlling the levels of other intracellular proteins, IC50 = 0.062 µm
such as tissue-type plasminogen activator (tPA) and urokinase-type IC50 = 0.104 µm
plasminogen activator (uPA).(2) Goal: to determine the effect of manipulating the carbamate handle and
the number and position of the hydroxyl groups on the gallate core.
IC50 = 0.029 µm
IC50 = 9.6 µm IC50 = 0.048 µm
Design and Synthesis
Effect of manipulating the carbamate handle on PAI-1 inhibition:
The focus of the reactions depicted in Scheme 1 is the production of IC50 = 4.75 µm IC50 = 0.159 µm
IC50 = 4.69 µm
compounds that investigate the effect of manipulating the carbamate handle
Fibrinolysis: Green arrows indicate a on either a gallate or protocatechuate coupled species. In concert, the effect
stimulatory effect, and red arrows
indicate an inhibitory effect.
on inhibition which the change in either the number or position of the
hydroxyl groups that compose the gallate core was examined. A series of
five-six reactions are required to synthesize the desired compounds. These
reactions were repeated as necessary using different attachments. The last
Therefore, the goal of this research is to inhibit the inhibitor of fibrinolysis, step which entailed the removal of the benzyl protecting groups utilized
IC50 = 0.02 µm
the process which leads to the break down of blood clots. Pd/C 10%. Attempts were made to remove these protecting groups with an IC50 = 0.0108 µm IC50 = 0.022 µm
encapsulated version, Pd Encat 30 Palladium Acetate Microencapsulated in
The complexity of the PAI-1 structure has the potential to possess several
Polyurea Matrix 0.4 mmol Pd/g. It was done with the aim of eliminating
binding sites to a wide variety of inhibitory molecules. Development of
the highly toxic palladium from in vivo studies.(4)
therapeutic agents that act as selective inhibitors of PAI-1 may provide an
approach to treat these ailments. Recent reports have noticed inhibitive
properties in furan-2-one and pyrrolin-2-one derivatives.(3) However, Scheme 1: Synthesis of differing PAI-1 inhibitory molecules IC50 = ? µm
IC50 = ? µm IC50 = 0.027 µm
these known accounts have reported the synthesis of inhibitors that bind to
PAI-1 with a low affinity and fail to inhibit PAI-1 when vitronectin, a
cofactor of PAI-1 is present. Conclusion
Activity towards PAI-1 is very sensitive to the identity of the
carbamate handle. Carbamate handles which are composed of electron-rich
Species result in a increased inhibition of PAI-1. The modification of the gallate
IC50 = 9.6 µm core to a protocatechuate results in a positive increase in the inhibition of the
serpin.
A furan-2-one/pyrrolin-2-one derivative.
A high-throughput screen was conducted by Daniel Lawrence and
Future Directions
- Test the inhibitory effect of electronically larger species attachments.
coworkers at the University of Michigan against a large library of a variety - Synthesize inhibitors with asymmetric gallate attachments.
of organic compounds. Some of these compounds proved to be effective - Incorporate R-NH2 attachments.
PAI-1 inhibitors. Many of these compounds contain gallate or digallate
groups. Similar compounds containing related phenolic structures did not Acknowledgements
show inhibitory activity versus PAI-1. Molecules were synthesized - The remaining members of the Emal and Lawrence research groups
containing varying numbers of gallates which proved to be effective PAI-1
inhibitors. Funding from:
- Eastern Michigan University
O O
- Camille and Henry Dreyfus Foundation
HO OH
O O - National Institutes of Health
HO
O O
OH
References
OH OH 1.) Ren, Y., Himmeldirk, K., Chen, X. J. Med. Chem. 2006, 49, 2829-2837.
2.) Wang et al. Biochemistry. 1996, 35 (51), 16443-16448.
3.) Miyazaki, H.; Ogiku, T.; Hiroshi, S.; Moritani, Y.; Ohtanl, A. Chem. Pharm. Bull. 2009, 57 (9) 979-985.
4.) Cale, J. M.; Li, S.; Warnock, M.; Su, E. J.; North, P. R.; Sanders, K. L.; Puscau, M. M.; Emal, C. D.; Lawrence,
HO OH IC50 = 0.37 µm D. A. Characterization of a Novel Class of Polyphenolic Inhibitors of Plasminogen Activator Inhibitor-1. J.
IC50 = 0.025 µm Bio. Chem. 2010 In Press
OH