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Engineering Di-Block Co-Polymers
           for Drug Delivery


 Ekta Sharma, Min Dai, Jin K. Montclare*


                 Polytechnic Institute of NYU
        Department of Chemical and Biological Sciences
           6 Metrotech Center, Brooklyn, NY 11201



            Sigma Xi Student Reserach Showcase           1
Hypothesis: Generate Smart Biomaterials – GNP hybrid
for Drug Delivery

                                                     Protein aggregation
                                                     towards target cells




                                                          Conversion :
                                                          Light energy 
                                                             Thermal energy




                                                      Curcumin bound
                                                      Protein with GNP

                Sigma Xi Student Research Showcase                            2
Layout of Project :




              Sigma Xi Student Research Showcase   3
Elastin-Like Polypeptide (E) - Inverse
  Temperature Transition
                        (VPGXG)n
         Elastin-Like Polypeptide (E) Repeats 5
         Amino Acids
         X: Guest Residue; any Amino Acid but
         not Proline
         Possess Inverse Temperature Transition




                          Possible mechanisms for the phase transition of (VPGIG)40 proposed by Tirrell D.

Chilkoti Group Website. http://www.chilkotilab.pratt.duke.edu/researchELP.htm (accessed January 6, 2012).
Yamaoka, T.; Tamura, T.; Seto, Y.; Tada, S.; Hunugi, S.; Tirrell, D. A. Biomacromolecules, 2003, 4, 1680-1685
                                                                                                                4
                                              Sigma Xi Student Research Showcase
Coiled-Coil Domain of Cartilage Oligomeric
 Matrix Protein (C) - Binding
 COMP           4 epidermal type 3           globular
                growth factor repeat         domain                                     COMPcc or C
   CC
                (EGF)         (T3)           (TC)
 H2N                                                  COOH



                                                                                                                2~6 Å


                                                                                                                   ~30 Å

                                                                                         73 Å

                                                                                  VA, VD, Curcumin, Ca2+, Cl-



AnaMar Website. http://www.compelisa.com/2/en/about-comp/what-is-comp.php (accessed December 19, 2012).
Ozbek, S.; Engel, J.; Stetefeld, J. The EMBO Journal, 2002, 21, 5960-5968

                                             Sigma Xi Student Research Showcase
                                                                                                                        5
Generate Smart Biomaterials Using E and C as
Building Blocks




                Sigma Xi Student Research Showcase   6
DNA Transformation -
PLASMID MAP
   PQE-30
   LAC OPERON
   ANTIBIOTIC RESISTANCE                              E 1C
   HIS-TAG                                          3806 bp

GLYCEROL STOCK
   XL1-Blue

ELECTROPORATION
   AF-IQ Cells


                                                   CE1
                                                 3816 bp




                           Sigma Xi Student Research Showcase   7
Cell Expression -
  Streak Colonies           Small scale Expression Large scale Expression
E1CCE1 glycerol stocks                                          Suspend culture
                             Colony pick-up
streaked on TSAAMP plate                                        in 1L LB
                             and suspension
                             in Luria Broth
                                                                 Incubation (370C)


                                                                                   Induction
                                                                                   with IPTG


                                                                 Overnight
                                                                 Incubation
Overnight incubation                                             (370C)
        37oC                     Overnight Incubation
                                        (370C)

                            Sigma Xi Student Research Showcase                                 8
SDS PAGE Gel-
 Expression Gel                              Osmotic Shock Gel
 E 1C    CE1




                  Sigma Xi Student Research Showcase             9
Extraction and Purification -
     Cell Lysis with Sonication –
    • 30% impulse
    • 2 mins 15 seconds

     Centrifugation to separate
     cell lysates and Proteins

Purification – using HPLC
  • Ni Resin Column
  • His residue of protein binds to Ni
      ions.
  • Elution collected with different
      percentage of Buffer B
      (1%,5%,100%)
   Buffer A: 6 M urea, 50 mM Na2HPO4, 20 mM imidazole, pH 8.0
 Buffer B: 6 M urea, 50 mM Na2HPO4, 200 mM imidazole, pH 8.0

                                                 Sigma Xi Student Research Showcase   10
Purification Result -
        E1C                                                  CE1




                                                                      15 Kb
                                       15 Kb



    MW : 14.1 Kb                                        MW: 13.9 Kb
                   Sigma Xi Student Research Showcase                  11
Quantification using MicroBCA
Principle :

Reduction of Cu   to Cu1+: peptides containing three or more amino acid residues form a colored chelate
                   2+

complex with cupric ions in an alkaline environment containing sodium potassium tartrate.

Bicinchoninic acid (BCA) reaction : chelation of two molecules of BCA with one cuprous ion to give
purple color.



 Protocol –
 •Standards of BSA were made of concentration –
 40,20,10,5,2.5 ul

 On Microtiter plate -
 •Std : 150 ul + 150 ul Reaction mixture
 •Sample – 15 ul + 135 ul of PB + 150 ul Working reagent
 (A:B:C – 50:48:2)
 •2 hrs of incubation at 37 C.


http://www.qcbio.com/pierce/BCA%20Protein%20Assay%20Reagent.htm

                                      Sigma Xi Student Research Showcase                                   12
Result :
     BSA Standard Absorbance Plot




                                                   Concentration Calculation -

                                                                         CE1           E1C

                                                          ugmL    223.3491705   141.420705

                                                         mgmL     0.223349171   0.14142071

                                                           MW         13941.72     13864.66



                                                        molarity   1.60202E-05   1.02001E-05




                   Sigma Xi Student Research Showcase                                          13
Integration of Inorganic
Materials with Organic
   Protein Polymers




                           14
Controllable Metal Nanostructures


                                                                                   AuAg alloy
                  Au                                                               nanoparticles with
              nanosphere                                                           increasing Au
                                                                                   concentration



                                                                                   Au nanorods of
                  Au                                                               increasing aspect
               nanorods                                                            ratio




                   Ag                                                              Ag nanoprisms with
               nanoprisms                                                          increasing lateral size




Liz-Marzán, L.M. Materials Today, 2004, 7, 26-31

                                              Sigma Xi Student Research Showcase                             15
Potential of Gold Nanoparticles Based on
 Protein-Gold Nanoparticles Interaction

                                                                                      Protein adsorption
                                                                                      on GNPs surface




                                                                                      Protein misfolding




                                                                                     Protein aggregation


Zhang, D.; Neumann, O.; Wang, H.l Yuwono, V. M.; Barhoumi, A.; Perham, M.; Hartgerink, J. D.; Wittung-Stafshede, P.; Halas, N.
J. Nano Letters, 2009, 9, 666-671

                                             Sigma Xi Student Research Showcase                                                  16
Process of Templation -
      •     incubate with HAuCl4•3H2O for 5 mins
      •     40:1 molar ration between Au and
            protein
      •     reduce with NaBH4 2.5:1 ration to Au

      4HAuCl4 + 3NaBH4 -> 4Au + 6H2 + 3NaCl + 3BCl3 + 4HCl

      • Gold binds to Histidine
         Uniform coating




Slocik, J. M.; Wright, D. W. Biomacromolecules, 2003, 4, 1135-1141.

                                              Sigma Xi Student Research Showcase   17
Overview on Circular Dichroism -
a form of light absorption
spectroscopy that measures the
difference in absorbance of right-
and left-circularly polarized light by
a chiral molecule




                        Sigma Xi Student Research Showcase   18
Circular Dichroism for Proteins
                                         • All amino acids except glycine
                                           are chiral
                                         • Phenomena exhibited due to e-
                                           transition

                                         n -> π* centerd around 215-230
                                           nm ;
                                         involves non-bonding
                                         electrons of O of the carbonyl

                                         • π -> π* centerd around 185-
                                           200 nm
                                         involves the π-electrons of
                                         the carbonyl

                                         The intensity and energy of
                                         these transitions depends on φ
                                         and ψ (i.e., secondary structure)
http://www.informatics.indiana.edu/predrag/classes/2008springi619/week4_m.pdf - András Szilágyi

                                           Sigma Xi Student Research Showcase                     19
Study-1 : Impact on Secondary Structure of P
       and P•GNP
                        15000
                                                  25 ℃
                                                   CE1-GNP
                                                   CE1•GNP
                        10000
�mrw (deg∙CM2∙dmol-1)




                                                   CE1wt
                                                   CE1
                                                                               GNPs decrease the CD reading
                                                   E1C-GNP
                                                   E1C•GNP
                         5000                      E1Cwt
                                                   E1 C


                           0
                                                                               GNPs slightly increase the
                                                                               unordered structure for both E1C and
                        -5000
                                                                               CE1

                   -10000
                         180    200     220         240             260


                                Wavelength (nm)



                                              Sigma Xi Student Research Showcase                                  20
Measured Secondary Structure using CDSSTR
                             22000
                                                             E1C-GNP heating

                             17000
                                              E1C•GNP                                                         12000            •GNP
                                                                                                                            CE1CE -GNP                     CE1
                                                                               E1C         25                                        1

                                                                                           40
     �mrw (deg∙CM2∙dmol-1)

                             12000                                                         55                                                                     25
                                                                                           70
                                                                                                               7000                                       95○C    40
                                                                                                                                                                  55
                                                                               95○C        95                                                                     70
                                                                                                                                                                  95
                              7000
                                                                                                                                                   4 ○C
                                                                                                               2000
                                                                     4 ○C
                              2000

                                     12000                                                                         12000
                                                                                                               -3000                      95 ℃
                             -3000
                                                          95 ℃
                                                         CE1-GNP                                                                         CE1-GNP

                                                                                                 25                                                                    25
                                      7000                                                       40            -8000 7000                                              40
                             -8000                                                               55                                                                    55
                                                                                                 70                                                                    70
                                                                                                                                                                       95
                                       25 ℃                                                      95
                                                                                                                          25 ℃
                             -13000 2000                                                                      -13000 2000
                                   185           200         215         230         245          260               185       200         215       230     245        260
                                                                                                Wavelength (nm)
                                                                                                                   -3000
                                      -3000
                                       E1C•GNP                                        CE1•GNP
Fraction (%)




                                                                                                                   -8000
                                      -8000
                                                                                                                      Beta                        GNPs do not disturb the
                                                                                                                      Unordered                   response of proteins to
                                     -13000                                                                       -13000
                                           185         200         215         230         245          260           Helix
                                                                                                                        185         200           heat230
                                                                                                                                                215       245   260




                                                         Temperature (℃)

                                                                                     Sigma Xi Student Research Showcase                                                      21
Study – 2 : Impact of GNPs on Tt
                                                     1




                    Uniformed Turbidity at 800 nm
                                                    0.9
                                                                  E1C
                                                    0.8
                                                                 27 ℃
                                                    0.7

                                                    0.6       E1C-GNP
                                                                                                   E1C

                                                    0.5
                                                                30 ℃                               E1C-GNP
                                                                                                   CE1
                                                    0.4                                            CE1-GNP
                                                                            CE1           CE1-GNP
                                                    0.3
                                                                           59 ℃           67 ℃
                                                    0.2

                                                    0.1

                                                     0
                                                          0        20       40       60       80         100
                                                                          Temperature (℃)



   Comparison between Tts of E1C and CE1 are consistent with library data
  Tt of both E1C and CE1 are enhanced after templation
   Enhanced Tt of CE1 after templation is greater than that of E1C


                                                              Sigma Xi Student Research Showcase               22
Study – 3 : Effect on Binding Ability

       Why Curcumin ?
     Hydrophobic nature
    COMP domain forms hydrophobic pore which aids binding
    of curcumin
    Anti-oxidant and anti-inflammatory properties
    Potential for cancer treatment




Aggarwal, B. B.; Shishodia, S. (2004). "Suppression of the Nuclear Factor-κB Activation Pathway by Spice-Derived Phytochemicals: Reasoning for
Seasoning". Annals of the New York Academy of Sciences 1030: 434–441


                                                   Sigma Xi Student Research Showcase
                                                                                                                                                 23
Result

                   CCM to protein binding
  Protein Sample        molar ratio

       CE1              1.6±0.9 : 1
       E1C              1.8±0.8 : 1
    CE1•GNP             2.1±0.7 : 1
    E1C•GNP             2.5±0.6 : 1




     GNPs maintain the binding and releasing ability of E1C and CE1 to
     Curcumin


                            Sigma Xi Student Research Showcase
                                                                         24
Conclusions..

☞ GNPs have impact on proteins conformation.

☞ GNPs also affect on the thermoresponsive properties of the
   proteins. The effect is greater on CE1 than E1C.

☞ GNPs do not eliminate binding ability of the proteins.

GNPs have influence on proteins conformation and
thermoresponsivity while still maintain the binding ability of the
proteins. Through templation it is possible to control the
thermoresponsivity of the proteins.

                      Sigma Xi Student Research Showcase             25
Thank you!




                                     and many more
                                      lab members!

Sigma Xi Student Research Showcase                   26

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Sigma Xi - EKS95460- ekta sharma

  • 1. Engineering Di-Block Co-Polymers for Drug Delivery Ekta Sharma, Min Dai, Jin K. Montclare* Polytechnic Institute of NYU Department of Chemical and Biological Sciences 6 Metrotech Center, Brooklyn, NY 11201 Sigma Xi Student Reserach Showcase 1
  • 2. Hypothesis: Generate Smart Biomaterials – GNP hybrid for Drug Delivery Protein aggregation towards target cells Conversion : Light energy  Thermal energy Curcumin bound Protein with GNP Sigma Xi Student Research Showcase 2
  • 3. Layout of Project : Sigma Xi Student Research Showcase 3
  • 4. Elastin-Like Polypeptide (E) - Inverse Temperature Transition (VPGXG)n Elastin-Like Polypeptide (E) Repeats 5 Amino Acids X: Guest Residue; any Amino Acid but not Proline Possess Inverse Temperature Transition Possible mechanisms for the phase transition of (VPGIG)40 proposed by Tirrell D. Chilkoti Group Website. http://www.chilkotilab.pratt.duke.edu/researchELP.htm (accessed January 6, 2012). Yamaoka, T.; Tamura, T.; Seto, Y.; Tada, S.; Hunugi, S.; Tirrell, D. A. Biomacromolecules, 2003, 4, 1680-1685 4 Sigma Xi Student Research Showcase
  • 5. Coiled-Coil Domain of Cartilage Oligomeric Matrix Protein (C) - Binding COMP 4 epidermal type 3 globular growth factor repeat domain COMPcc or C CC (EGF) (T3) (TC) H2N COOH 2~6 Å ~30 Å 73 Å VA, VD, Curcumin, Ca2+, Cl- AnaMar Website. http://www.compelisa.com/2/en/about-comp/what-is-comp.php (accessed December 19, 2012). Ozbek, S.; Engel, J.; Stetefeld, J. The EMBO Journal, 2002, 21, 5960-5968 Sigma Xi Student Research Showcase 5
  • 6. Generate Smart Biomaterials Using E and C as Building Blocks Sigma Xi Student Research Showcase 6
  • 7. DNA Transformation - PLASMID MAP PQE-30 LAC OPERON ANTIBIOTIC RESISTANCE E 1C HIS-TAG 3806 bp GLYCEROL STOCK XL1-Blue ELECTROPORATION AF-IQ Cells CE1 3816 bp Sigma Xi Student Research Showcase 7
  • 8. Cell Expression - Streak Colonies Small scale Expression Large scale Expression E1CCE1 glycerol stocks Suspend culture Colony pick-up streaked on TSAAMP plate in 1L LB and suspension in Luria Broth Incubation (370C) Induction with IPTG Overnight Incubation Overnight incubation (370C) 37oC Overnight Incubation (370C) Sigma Xi Student Research Showcase 8
  • 9. SDS PAGE Gel- Expression Gel Osmotic Shock Gel E 1C CE1 Sigma Xi Student Research Showcase 9
  • 10. Extraction and Purification -  Cell Lysis with Sonication – • 30% impulse • 2 mins 15 seconds Centrifugation to separate cell lysates and Proteins Purification – using HPLC • Ni Resin Column • His residue of protein binds to Ni ions. • Elution collected with different percentage of Buffer B (1%,5%,100%) Buffer A: 6 M urea, 50 mM Na2HPO4, 20 mM imidazole, pH 8.0 Buffer B: 6 M urea, 50 mM Na2HPO4, 200 mM imidazole, pH 8.0 Sigma Xi Student Research Showcase 10
  • 11. Purification Result - E1C CE1 15 Kb 15 Kb MW : 14.1 Kb MW: 13.9 Kb Sigma Xi Student Research Showcase 11
  • 12. Quantification using MicroBCA Principle : Reduction of Cu to Cu1+: peptides containing three or more amino acid residues form a colored chelate 2+ complex with cupric ions in an alkaline environment containing sodium potassium tartrate. Bicinchoninic acid (BCA) reaction : chelation of two molecules of BCA with one cuprous ion to give purple color. Protocol – •Standards of BSA were made of concentration – 40,20,10,5,2.5 ul On Microtiter plate - •Std : 150 ul + 150 ul Reaction mixture •Sample – 15 ul + 135 ul of PB + 150 ul Working reagent (A:B:C – 50:48:2) •2 hrs of incubation at 37 C. http://www.qcbio.com/pierce/BCA%20Protein%20Assay%20Reagent.htm Sigma Xi Student Research Showcase 12
  • 13. Result : BSA Standard Absorbance Plot Concentration Calculation - CE1 E1C ugmL 223.3491705 141.420705 mgmL 0.223349171 0.14142071 MW 13941.72 13864.66 molarity 1.60202E-05 1.02001E-05 Sigma Xi Student Research Showcase 13
  • 14. Integration of Inorganic Materials with Organic Protein Polymers 14
  • 15. Controllable Metal Nanostructures AuAg alloy Au nanoparticles with nanosphere increasing Au concentration Au nanorods of Au increasing aspect nanorods ratio Ag Ag nanoprisms with nanoprisms increasing lateral size Liz-Marzán, L.M. Materials Today, 2004, 7, 26-31 Sigma Xi Student Research Showcase 15
  • 16. Potential of Gold Nanoparticles Based on Protein-Gold Nanoparticles Interaction Protein adsorption on GNPs surface Protein misfolding Protein aggregation Zhang, D.; Neumann, O.; Wang, H.l Yuwono, V. M.; Barhoumi, A.; Perham, M.; Hartgerink, J. D.; Wittung-Stafshede, P.; Halas, N. J. Nano Letters, 2009, 9, 666-671 Sigma Xi Student Research Showcase 16
  • 17. Process of Templation - • incubate with HAuCl4•3H2O for 5 mins • 40:1 molar ration between Au and protein • reduce with NaBH4 2.5:1 ration to Au 4HAuCl4 + 3NaBH4 -> 4Au + 6H2 + 3NaCl + 3BCl3 + 4HCl • Gold binds to Histidine  Uniform coating Slocik, J. M.; Wright, D. W. Biomacromolecules, 2003, 4, 1135-1141. Sigma Xi Student Research Showcase 17
  • 18. Overview on Circular Dichroism - a form of light absorption spectroscopy that measures the difference in absorbance of right- and left-circularly polarized light by a chiral molecule Sigma Xi Student Research Showcase 18
  • 19. Circular Dichroism for Proteins • All amino acids except glycine are chiral • Phenomena exhibited due to e- transition n -> π* centerd around 215-230 nm ; involves non-bonding electrons of O of the carbonyl • π -> π* centerd around 185- 200 nm involves the π-electrons of the carbonyl The intensity and energy of these transitions depends on φ and ψ (i.e., secondary structure) http://www.informatics.indiana.edu/predrag/classes/2008springi619/week4_m.pdf - András Szilágyi Sigma Xi Student Research Showcase 19
  • 20. Study-1 : Impact on Secondary Structure of P and P•GNP 15000 25 ℃ CE1-GNP CE1•GNP 10000 �mrw (deg∙CM2∙dmol-1) CE1wt CE1 GNPs decrease the CD reading E1C-GNP E1C•GNP 5000 E1Cwt E1 C 0 GNPs slightly increase the unordered structure for both E1C and -5000 CE1 -10000 180 200 220 240 260 Wavelength (nm) Sigma Xi Student Research Showcase 20
  • 21. Measured Secondary Structure using CDSSTR 22000 E1C-GNP heating 17000 E1C•GNP 12000 •GNP CE1CE -GNP CE1 E1C 25 1 40 �mrw (deg∙CM2∙dmol-1) 12000 55 25 70 7000 95○C 40 55 95○C 95 70 95 7000 4 ○C 2000 4 ○C 2000 12000 12000 -3000 95 ℃ -3000 95 ℃ CE1-GNP CE1-GNP 25 25 7000 40 -8000 7000 40 -8000 55 55 70 70 95 25 ℃ 95 25 ℃ -13000 2000 -13000 2000 185 200 215 230 245 260 185 200 215 230 245 260 Wavelength (nm) -3000 -3000 E1C•GNP CE1•GNP Fraction (%) -8000 -8000 Beta GNPs do not disturb the Unordered response of proteins to -13000 -13000 185 200 215 230 245 260 Helix 185 200 heat230 215 245 260 Temperature (℃) Sigma Xi Student Research Showcase 21
  • 22. Study – 2 : Impact of GNPs on Tt 1 Uniformed Turbidity at 800 nm 0.9 E1C 0.8 27 ℃ 0.7 0.6 E1C-GNP E1C 0.5 30 ℃ E1C-GNP CE1 0.4 CE1-GNP CE1 CE1-GNP 0.3 59 ℃ 67 ℃ 0.2 0.1 0 0 20 40 60 80 100 Temperature (℃) Comparison between Tts of E1C and CE1 are consistent with library data Tt of both E1C and CE1 are enhanced after templation Enhanced Tt of CE1 after templation is greater than that of E1C Sigma Xi Student Research Showcase 22
  • 23. Study – 3 : Effect on Binding Ability Why Curcumin ?  Hydrophobic nature COMP domain forms hydrophobic pore which aids binding of curcumin Anti-oxidant and anti-inflammatory properties Potential for cancer treatment Aggarwal, B. B.; Shishodia, S. (2004). "Suppression of the Nuclear Factor-κB Activation Pathway by Spice-Derived Phytochemicals: Reasoning for Seasoning". Annals of the New York Academy of Sciences 1030: 434–441 Sigma Xi Student Research Showcase 23
  • 24. Result CCM to protein binding Protein Sample molar ratio CE1 1.6±0.9 : 1 E1C 1.8±0.8 : 1 CE1•GNP 2.1±0.7 : 1 E1C•GNP 2.5±0.6 : 1 GNPs maintain the binding and releasing ability of E1C and CE1 to Curcumin Sigma Xi Student Research Showcase 24
  • 25. Conclusions.. ☞ GNPs have impact on proteins conformation. ☞ GNPs also affect on the thermoresponsive properties of the proteins. The effect is greater on CE1 than E1C. ☞ GNPs do not eliminate binding ability of the proteins. GNPs have influence on proteins conformation and thermoresponsivity while still maintain the binding ability of the proteins. Through templation it is possible to control the thermoresponsivity of the proteins. Sigma Xi Student Research Showcase 25
  • 26. Thank you! and many more lab members! Sigma Xi Student Research Showcase 26

Editor's Notes

  1. Sigma Xi Student Research Showcase
  2. Sigma Xi Student Research Showcase
  3. Sigma Xi Student Research Showcase
  4. Sigma Xi Student Research Showcase
  5. Where S 1 - Sucrose solution for round 1 of OS S 2 - Sucrose solution for round 2 of OS MgSO 4 - Round 2 of OS Sigma Xi Student Research Showcase
  6. Sigma Xi Student Research Showcase
  7. Sigma Xi Student Research Showcase
  8. Sigma Xi Student Research Showcase
  9. Sigma Xi Student Research Showcase
  10. Sigma Xi Student Research Showcase