Domestication  as a Model of Speciation 50 years long experiment, run in the Institute of Cytology and Genetics Biology. Summer School 2007 Novosibirsk Marina Voloshina Phys-Math School, Novosibirsk State University, 2007 http://www.slideshare.net/outdoors
This is an educational lecture for students –  an overview of an experiment conducted by scientists of Novosibirsk Institute of Cytology and Genetics and its evolutionary implications
Evolution – changes in genetic programs What kind of changes leads to speciation? Our subject today: The genetic background of evolution
Domestication of animals is a long-scale process, which began  in prehistoric times   Pet or tool?  Man walks a dog many thousands years ago http://www.kamat.com/kalranga/rockpain/betaka.htm Rock Painting, Madhya Pradesh, India  ~ 12 000 years old
Our assistants
And pets
Domestication is a result of artificial selection , which, opposite to natural selection , is carried out by man.  Actually, there is  no real opposition  between these two kinds of selection – even Charles Darwin began his classical work with amazing examples of variation in domestic animals, caused by man .
Darwin’s example of artificial selection – pigeons breeds
Darwin considered the man’s job on changing animal’s phenotype and behavior as  a model  of what  nature  can do.  And as any model it can help us to understand the   mechanisms of evolution  – the basic process of life history. The problem is that prehistoric people had not bothered of making detailed scientific records for us.
In 1959 a group of Siberian scientists, headed by academician  Dmitry K. Belyaev , the Director of the  Institute of Cytology and Genetics  in Novosibirsk, started a large-scale experiment on  fox  domestication.  It lasts ~ 50 years by now
Institute of Cytology and Genetics, Novosibirsk, Academgorodok
Academician  Dmitry  Belyaev 1917 - 1985
 
Belyaev’s collaborator. Guides this experiment now Dr. Ludmila Trut
It means: The individuals differ by  fitness   –   the most adopted have  more chances to survive  and to produce offspring  hence –  to pass their genes  to future generations The basic mechanism of evolution is   natural selection Charles Darwin
Depending on particular   phenotypes   it favors, the   natural selection   has several   types .
The universality of these three patterns is based on some  assumptions : The object for selection is some  phenotypic trait All traits are  equal  for selection – any of them can fall under selection pressure and change in similar way The phenotype variation, which is a raw material for selection, is just a manifestation of  pre-existing  genetic variation , produced by  mutation process
The real evolution is more complicated. Selection never affect one character only. Because an organism is by no way a mechanical combination of traits, but a  highly integrative system   The proteins and cells interact in the  ontogenesis  (individual development)  This process has  hierarchy  – some genes and gene complexes (the  master genes ) rule and control other genes activity.
The   highest  integrative levels in animals are  nerve and hormonal regulation From this point of view  traits  become  not equal Even slight changes in the  regulatory genes  can give rise to a wide network of changes in the developmental processes they govern.
In highly integrative systems even small changes of one element can lead to an avalanche-like events
Regulatory systems   The systems make an organism develop and function  as a whole Genes ,   controlling development Hormones Nerve system The hormonal and nerve systems are also defined by genes!
Regulatory genes
Thus, selecting animals for  behavior  – the top regulatory character, involving  many genes  - may lead to other, far-reaching changes in the animals’ development It can cause  destabilization of ontogenesis , and by that means changing of many  other characters , which had not undergone direct selection
The mystery of parallelism These was in line with one of well-known and mysterious facts about domestication: a striking  parallelism in the morphological changes   In a wide range of mammals – herbivores and predators, large and small – domestication seems to lead to strictly  coincident forms
all except sheep changes in reproductive cycle dogs, cats, pigs, sheep, goats, cattle floppy ears dogs, cats, sheep shortened tails, fewer vertebrae dogs, pigs rolled tails sheep, poodles, donkeys, horses, pigs, goats, mice, guinea pigs wavy or curly hair all piebald coat color all appearance of dwarf and giant forms Domesticated species Character
Can all these modifications be a  consequence  of a change  in one character  –  behavior  ? That was the idea of academician Belyaev, when he started the domestication experiment in 1959.
The fox domestication experiment As experimental model was chosen a species taxonomically close to the dog, but never before domesticated:  Vulpes vulpes , the silver fox
Belyaev began with 30 male and 100 female foxes, most of them from a commercial farm in Estonia  Foxes had been farmed since the beginning of XX-th century. The founding foxes were already tamer than their wild relatives The only criterion  for selection was  tameness  – friendly behavior   towards human beings
Selection was  strict : not more than 4 or 5 percent of male offspring and about 20 percent of female offspring have been allowed to breed  To ensure that their behavior is determined rather  by genes , than by the environment,  any training was excluded : the foxes spent their lives in cages and were allowed only brief contacts with humans
By behavior tests foxes were divided to 3 classes: Class I – tame . Friendly toward experimenters, wagging their tails and whining
Let themselves be petted and handled but show no emotionally  friendly response Class II – neutral
Class III – wild.  Aggressive behavior
wild
To the 10 th  generation of selection 18 % of foxes became elite (best of the Class I). Now days the elite foxes make about 80 %.
 
What distinguishes the domesticated foxes of the wild ones?   The first is the  behavior   Behavior is strictly determined by hormones – and  hormone level  changed significantly too  The  reproductive cycle  regulated by hormones is very conservative in wild animals.  Domestication  shifted time  of  the normal breeding season and  even made some  animals capable  for   twice a year reproduc tion . (normally once)
4. More surprising were the  morphological changes The new morphological characters that are absent in wild animals but are quite common in dogs: a loss of pigment in the coat color   – “Star” mark on the forehead and piebald coat floppy ears rolled tails shortened tails and legs
‘ Star’ heterozygous ‘ Star’ homozygous
 
Domesticated American  mink
Floppy  ears
Floppy ears in cats – Scottish-fold
Tails curled upwards
Shortened tail and legs
Questions and answers Why the changes involved  so many traits   whereas animals were selected  for behavior only ? Why the changes are  so similar  in animals of various systematic groups, domesticated by different people at different times in different parts of the world?
Nikolay  Vavilov   in 1930-th  explained the phenomenon   of  homologous variability  (parallelism)  by gene  homology  in  species of one lineage Similar genes produce  similar mutations Similar mutant phenotype
But  the frequency of   aberrant phenotypes in the population selected for behavior is  10 -2  - 10 - 3 .  which  is 2 or 3 orders   higher   than the  average  frequency of spontaneous mutations This  contradicts to  mutational  explanation of all   observed  aberrations  I n some  foxe s several different aberrations appear ed  simultaneously   – which is  statistically imp ossib le   if mutations at structural loci are the cause of these  change s
The answer of Belyaev was that  the   key is   the   selection for behavior .  He considered the genetic transformations of behavior to be the main factor entraining other genetic events.  Many of the genes determining behavior may be  regulator y , engaged in stabilizing an organism’s early development, or  ontogenesis .  Ontogenesi s  is an extremely delicate process. In principle, even slight shifts in the sequence of events could throw it into chaos. Thus the genes that orchestrate those events and keep them on track have a powerful role to play.
The leading role among  genes  stabilizing an organism’s development belongs to the genes that control  the neural and endocrine systems   The same genes govern the systems that control an animal’s behavior, including its friendliness or hostility toward human beings.  So, selecting animals for behavior can fundamentally alter the development of an organism.
Gene networks rule the development of all traits in ontogeneses Master genes in inductor cells Membrane receprors’ genes Regulatory genes Srtucrural proteins’ genes
Most of the  novel traits  and other changes in the foxes seem to result from  shifts in the rates of ontogenetic processes in other words, from changes  in the timepoint of genes action Floppy ears, for example, are characteristic of  newborn  fox pups but become get carried over to adulthood
The disintegration of regulatory mechanisms can give chance to manifest to the  “sleeping” mutations , which are normally  blocked  by these mechanisms  Recessive   mutations can express like  dominant  in the  new hormonal state It leads to the growth of variability of all characters – psychic and morphological.
Belyaev’s Idea of Destabilizing Selection Destabilizing Selection   is a  strong directional selection  by an  integrative character , that controls ontogenesis.  This type of selection provides wide genetic variation by  destroying the masking regulatory mechanisms .
The idea explains  the parallelism  in evolutionary changes of domesticated animals of different taxonomic groups. Indeed, if the  regulatory mechanisms  – nerve and hormonal –  are similar  in all Mammals, then destabilizing of them would lead to similar phenotypic changes. Belyaev’s Idea of Destabilizing Selection
Destabilizing Selection as a Model of Speciation   A puzzle of speciation is that species seem to be  stable for a long periods of time   And then suddenly (in geological time scale) disappear (in case of extinction) or transform to a new species. Thus, speciation is  relatively fast  process (hundreds - thousands generations) in comparison with species continuance.
Stasis, Extinction and Speciation
Species stability is maintained by  stabilizing selection Ivan Shmalgauzen  1884 - 1963 It provides  genetic homeostasis .  All genes act in  coordinate  way, resulting in  normal development
But  stabilizing selection  is effective in  stable  environment only If environment  abruptly changes  – the average fitness of population falls dramatically and  directional selection  for previously rare phenotypes began
These  extreme phenotypes  may be not balanced with other genes – because synchronizing gene orchestra takes time. The population enters the  period of instability. new equilibrium. extinction.
This model of speciation was put forward by Stephen Jay Gould in 1970-th
Punctuated Equilibrium  Theory of Speciation
This theory strongly  resembles   processes observed in  domestication Of course, natural selection, leading to speciation  should not  always affect  behavior Selection may act on  any regulatory chain
For example, strict change of environment can  provoke   stress  – intensive emotional pressure.  Stress leads to long-time  hormonal changes  and  selection for stress-resistance genes  – regulatory kind of genes, like genes of behavior
The recent results from  molecular study of genomes  come in line with this view on speciation They revealed that most of general changes in organism’s structure are result of changes in  gene regulation ,  their  spatial and temporal pattern of expression , rather than direct changes in their DNA sequence
Regulatory evolution at the  yellow  gene underlies the wing pigmenation of Drosophilidae   Staining for  yellow  protein D.melanogaster   D.  biarmipes  D.  guttifera  Wings
Domestic Animals: Parallelism in Color
 
 
Humans and dogs – convergent evolution? http://email.eva.mpg.de/~tomas/pdf/Hare_Tomasello05.pdf
Implications  of Domestication Mechanisms  for  H uman  C ognitive  E volution This recent comparative work suggests that  human-like   social intelligence  could initially have evolved, not as an   adaptation,  but rather as a  by-product  of  selection on   social-emotional systems  –  perhaps   supported primarily by  limbic and endocrine systems   rather than the  neocortex
Links Wikipedia article  http ://en.wikipedia.org/wiki/Tame_Silver_Fox   Lyudmila Trut. Early Canid Domestication: The Farm-Fox Experiment  http://www.americanscientist.org/my_amsci/restricted.aspx?act=pdf&id=3038739723681   Website of the Cornell University on the collaboration work with the Institute of Cytology and Genetics, Novosibirsk  http ://cbsu.tc.cornell.edu/ccgr/behaviour/Index.htm   What Can Dogs And Silver Foxes Tell Us About Each Other?  http ://cbsu.tc.cornell.edu/ccgr/behaviour/04_Recent_Publications/FoxChapter.pdf   B.Hare and Michael Tomasello. Human-like social scills in dogs?  http://email.eva.mpg.de/~tomas/pdf/Hare_Tomasello05.pdf
Copyright notice This is an educational presentation, based on works of D.K. Belyaev and L.N.Trut of the Institute of Cytology and Genetics. You can use it in education with the links to original works. Any commercial use is prohibited. You have no right to place it on any website or portal for download. Marina Voloshina http :// www.slideshare.net / outdoors http:// biologii.net

Domestication And Evolution

  • 1.
    Domestication asa Model of Speciation 50 years long experiment, run in the Institute of Cytology and Genetics Biology. Summer School 2007 Novosibirsk Marina Voloshina Phys-Math School, Novosibirsk State University, 2007 http://www.slideshare.net/outdoors
  • 2.
    This is aneducational lecture for students – an overview of an experiment conducted by scientists of Novosibirsk Institute of Cytology and Genetics and its evolutionary implications
  • 3.
    Evolution – changesin genetic programs What kind of changes leads to speciation? Our subject today: The genetic background of evolution
  • 4.
    Domestication of animalsis a long-scale process, which began in prehistoric times Pet or tool? Man walks a dog many thousands years ago http://www.kamat.com/kalranga/rockpain/betaka.htm Rock Painting, Madhya Pradesh, India ~ 12 000 years old
  • 5.
  • 6.
  • 7.
    Domestication is aresult of artificial selection , which, opposite to natural selection , is carried out by man. Actually, there is no real opposition between these two kinds of selection – even Charles Darwin began his classical work with amazing examples of variation in domestic animals, caused by man .
  • 8.
    Darwin’s example ofartificial selection – pigeons breeds
  • 9.
    Darwin considered theman’s job on changing animal’s phenotype and behavior as a model of what nature can do. And as any model it can help us to understand the mechanisms of evolution – the basic process of life history. The problem is that prehistoric people had not bothered of making detailed scientific records for us.
  • 10.
    In 1959 agroup of Siberian scientists, headed by academician Dmitry K. Belyaev , the Director of the Institute of Cytology and Genetics in Novosibirsk, started a large-scale experiment on fox domestication. It lasts ~ 50 years by now
  • 11.
    Institute of Cytologyand Genetics, Novosibirsk, Academgorodok
  • 12.
    Academician Dmitry Belyaev 1917 - 1985
  • 13.
  • 14.
    Belyaev’s collaborator. Guidesthis experiment now Dr. Ludmila Trut
  • 15.
    It means: Theindividuals differ by fitness – the most adopted have more chances to survive and to produce offspring hence – to pass their genes to future generations The basic mechanism of evolution is natural selection Charles Darwin
  • 16.
    Depending on particular phenotypes it favors, the natural selection has several types .
  • 17.
    The universality ofthese three patterns is based on some assumptions : The object for selection is some phenotypic trait All traits are equal for selection – any of them can fall under selection pressure and change in similar way The phenotype variation, which is a raw material for selection, is just a manifestation of pre-existing genetic variation , produced by mutation process
  • 18.
    The real evolutionis more complicated. Selection never affect one character only. Because an organism is by no way a mechanical combination of traits, but a highly integrative system The proteins and cells interact in the ontogenesis (individual development) This process has hierarchy – some genes and gene complexes (the master genes ) rule and control other genes activity.
  • 19.
    The highest integrative levels in animals are nerve and hormonal regulation From this point of view traits become not equal Even slight changes in the regulatory genes can give rise to a wide network of changes in the developmental processes they govern.
  • 20.
    In highly integrativesystems even small changes of one element can lead to an avalanche-like events
  • 21.
    Regulatory systems The systems make an organism develop and function as a whole Genes , controlling development Hormones Nerve system The hormonal and nerve systems are also defined by genes!
  • 22.
  • 23.
    Thus, selecting animalsfor behavior – the top regulatory character, involving many genes - may lead to other, far-reaching changes in the animals’ development It can cause destabilization of ontogenesis , and by that means changing of many other characters , which had not undergone direct selection
  • 24.
    The mystery ofparallelism These was in line with one of well-known and mysterious facts about domestication: a striking parallelism in the morphological changes In a wide range of mammals – herbivores and predators, large and small – domestication seems to lead to strictly coincident forms
  • 25.
    all except sheepchanges in reproductive cycle dogs, cats, pigs, sheep, goats, cattle floppy ears dogs, cats, sheep shortened tails, fewer vertebrae dogs, pigs rolled tails sheep, poodles, donkeys, horses, pigs, goats, mice, guinea pigs wavy or curly hair all piebald coat color all appearance of dwarf and giant forms Domesticated species Character
  • 26.
    Can all thesemodifications be a consequence of a change in one character – behavior ? That was the idea of academician Belyaev, when he started the domestication experiment in 1959.
  • 27.
    The fox domesticationexperiment As experimental model was chosen a species taxonomically close to the dog, but never before domesticated: Vulpes vulpes , the silver fox
  • 28.
    Belyaev began with30 male and 100 female foxes, most of them from a commercial farm in Estonia Foxes had been farmed since the beginning of XX-th century. The founding foxes were already tamer than their wild relatives The only criterion for selection was tameness – friendly behavior towards human beings
  • 29.
    Selection was strict : not more than 4 or 5 percent of male offspring and about 20 percent of female offspring have been allowed to breed To ensure that their behavior is determined rather by genes , than by the environment, any training was excluded : the foxes spent their lives in cages and were allowed only brief contacts with humans
  • 30.
    By behavior testsfoxes were divided to 3 classes: Class I – tame . Friendly toward experimenters, wagging their tails and whining
  • 31.
    Let themselves bepetted and handled but show no emotionally friendly response Class II – neutral
  • 32.
    Class III –wild. Aggressive behavior
  • 33.
  • 34.
    To the 10th generation of selection 18 % of foxes became elite (best of the Class I). Now days the elite foxes make about 80 %.
  • 35.
  • 36.
    What distinguishes thedomesticated foxes of the wild ones? The first is the behavior Behavior is strictly determined by hormones – and hormone level changed significantly too The reproductive cycle regulated by hormones is very conservative in wild animals. Domestication shifted time of the normal breeding season and even made some animals capable for twice a year reproduc tion . (normally once)
  • 37.
    4. More surprisingwere the morphological changes The new morphological characters that are absent in wild animals but are quite common in dogs: a loss of pigment in the coat color – “Star” mark on the forehead and piebald coat floppy ears rolled tails shortened tails and legs
  • 38.
    ‘ Star’ heterozygous‘ Star’ homozygous
  • 39.
  • 40.
  • 41.
  • 42.
    Floppy ears incats – Scottish-fold
  • 43.
  • 44.
  • 45.
    Questions and answersWhy the changes involved so many traits whereas animals were selected for behavior only ? Why the changes are so similar in animals of various systematic groups, domesticated by different people at different times in different parts of the world?
  • 46.
    Nikolay Vavilov in 1930-th explained the phenomenon of homologous variability (parallelism) by gene homology in species of one lineage Similar genes produce similar mutations Similar mutant phenotype
  • 47.
    But thefrequency of aberrant phenotypes in the population selected for behavior is 10 -2 - 10 - 3 . which is 2 or 3 orders higher than the average frequency of spontaneous mutations This contradicts to mutational explanation of all observed aberrations I n some foxe s several different aberrations appear ed simultaneously – which is statistically imp ossib le if mutations at structural loci are the cause of these change s
  • 48.
    The answer ofBelyaev was that the key is the selection for behavior . He considered the genetic transformations of behavior to be the main factor entraining other genetic events. Many of the genes determining behavior may be regulator y , engaged in stabilizing an organism’s early development, or ontogenesis . Ontogenesi s is an extremely delicate process. In principle, even slight shifts in the sequence of events could throw it into chaos. Thus the genes that orchestrate those events and keep them on track have a powerful role to play.
  • 49.
    The leading roleamong genes stabilizing an organism’s development belongs to the genes that control the neural and endocrine systems The same genes govern the systems that control an animal’s behavior, including its friendliness or hostility toward human beings. So, selecting animals for behavior can fundamentally alter the development of an organism.
  • 50.
    Gene networks rulethe development of all traits in ontogeneses Master genes in inductor cells Membrane receprors’ genes Regulatory genes Srtucrural proteins’ genes
  • 51.
    Most of the novel traits and other changes in the foxes seem to result from shifts in the rates of ontogenetic processes in other words, from changes in the timepoint of genes action Floppy ears, for example, are characteristic of newborn fox pups but become get carried over to adulthood
  • 52.
    The disintegration ofregulatory mechanisms can give chance to manifest to the “sleeping” mutations , which are normally blocked by these mechanisms Recessive mutations can express like dominant in the new hormonal state It leads to the growth of variability of all characters – psychic and morphological.
  • 53.
    Belyaev’s Idea ofDestabilizing Selection Destabilizing Selection is a strong directional selection by an integrative character , that controls ontogenesis. This type of selection provides wide genetic variation by destroying the masking regulatory mechanisms .
  • 54.
    The idea explains the parallelism in evolutionary changes of domesticated animals of different taxonomic groups. Indeed, if the regulatory mechanisms – nerve and hormonal – are similar in all Mammals, then destabilizing of them would lead to similar phenotypic changes. Belyaev’s Idea of Destabilizing Selection
  • 55.
    Destabilizing Selection asa Model of Speciation A puzzle of speciation is that species seem to be stable for a long periods of time And then suddenly (in geological time scale) disappear (in case of extinction) or transform to a new species. Thus, speciation is relatively fast process (hundreds - thousands generations) in comparison with species continuance.
  • 56.
  • 57.
    Species stability ismaintained by stabilizing selection Ivan Shmalgauzen 1884 - 1963 It provides genetic homeostasis . All genes act in coordinate way, resulting in normal development
  • 58.
    But stabilizingselection is effective in stable environment only If environment abruptly changes – the average fitness of population falls dramatically and directional selection for previously rare phenotypes began
  • 59.
    These extremephenotypes may be not balanced with other genes – because synchronizing gene orchestra takes time. The population enters the period of instability. new equilibrium. extinction.
  • 60.
    This model ofspeciation was put forward by Stephen Jay Gould in 1970-th
  • 61.
    Punctuated Equilibrium Theory of Speciation
  • 62.
    This theory strongly resembles processes observed in domestication Of course, natural selection, leading to speciation should not always affect behavior Selection may act on any regulatory chain
  • 63.
    For example, strictchange of environment can provoke stress – intensive emotional pressure. Stress leads to long-time hormonal changes and selection for stress-resistance genes – regulatory kind of genes, like genes of behavior
  • 64.
    The recent resultsfrom molecular study of genomes come in line with this view on speciation They revealed that most of general changes in organism’s structure are result of changes in gene regulation , their spatial and temporal pattern of expression , rather than direct changes in their DNA sequence
  • 65.
    Regulatory evolution atthe yellow gene underlies the wing pigmenation of Drosophilidae Staining for yellow protein D.melanogaster D. biarmipes D. guttifera Wings
  • 66.
  • 67.
  • 68.
  • 69.
    Humans and dogs– convergent evolution? http://email.eva.mpg.de/~tomas/pdf/Hare_Tomasello05.pdf
  • 70.
    Implications ofDomestication Mechanisms for H uman C ognitive E volution This recent comparative work suggests that human-like social intelligence could initially have evolved, not as an adaptation, but rather as a by-product of selection on social-emotional systems – perhaps supported primarily by limbic and endocrine systems rather than the neocortex
  • 71.
    Links Wikipedia article http ://en.wikipedia.org/wiki/Tame_Silver_Fox Lyudmila Trut. Early Canid Domestication: The Farm-Fox Experiment http://www.americanscientist.org/my_amsci/restricted.aspx?act=pdf&id=3038739723681 Website of the Cornell University on the collaboration work with the Institute of Cytology and Genetics, Novosibirsk http ://cbsu.tc.cornell.edu/ccgr/behaviour/Index.htm What Can Dogs And Silver Foxes Tell Us About Each Other? http ://cbsu.tc.cornell.edu/ccgr/behaviour/04_Recent_Publications/FoxChapter.pdf B.Hare and Michael Tomasello. Human-like social scills in dogs? http://email.eva.mpg.de/~tomas/pdf/Hare_Tomasello05.pdf
  • 72.
    Copyright notice Thisis an educational presentation, based on works of D.K. Belyaev and L.N.Trut of the Institute of Cytology and Genetics. You can use it in education with the links to original works. Any commercial use is prohibited. You have no right to place it on any website or portal for download. Marina Voloshina http :// www.slideshare.net / outdoors http:// biologii.net