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The Origins of Life
Dr. Rachel Mackelprang
Book: pg 10-24
Origins of life: central questions
•How many times did life evolve?
•How is life related (what is the structure of the tree of
life)?
•How can we figures this out?
The origins of life
a b c d e f g h
Consider the default class tree
The origins of life
a b c d e f g h
If this tree included all major group of organisms…
What does that imply about the number of times
life evolved?
The origins of life
a b c d e f g h
Consider the default class tree
MRCA
The origins of life
a b c d e f g h
Consider the default class tree
MRCAThis implies a single
common ancestor to all
life, sometime before the
MCRA
And thus, that
there is one “tree
of life”
What if life originated twice?
a b c d e f g h
What would you expect of a “tree of life” if there
were 2 origins?
What if life originated twice?
a b c d e f g h
No theoretical reason why this couldn’t
have occurred.
Origin 1
Origin 2
How many trees of life?
• How	do	we	dis)nguish	the	two	hypotheses?	
1. A	single	origin	(and	thus	a	single	tree	of	life)	
2. Mul)ple	origins	(and	thus	mul)ple	trees)	
• What	data	might	support	one	hypothesis	over	
the	other?
Universal homologies imply one origin
•Characters that our found in the same state in all
organisms are considered universal
•Character (i.e., features like the smiley face) that are
inherited from a common ancestor are
homologous
•Homologous characters that are found in the same
state in all organisms are universal homologies
Universal homologies: examples
DNA, double stranded, w/ ACTG
RNA w/ ACUG
Translated into proteins
• using tRNA
• using ribosomes
• using 3 letter code
• using 20 core amino acids
Lipoprotein cell envelope
Central dogma: from gene to protein
Universal homologies: examples
• Molecular	and	cellular	features	
–Use	of	DNA	as	gene)c	material	
–Use	of	ACTG	in	DNA	
–Use	of	ACUG	in	RNA	
–Three	leHer	gene)c	code	
–Central	dogma	(DNA->RNA->protein)	
–20	core	amino	acids	in	proteins	
• Specific	complexes	and	genes	
–Ribosomal	proteins	and	RNA	
–RNA	polymerase	proteins
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
What if life originated twice?
a b c d e f g h
Problem: homologous traits need to have a single
origin
What if life originated twice?
a b c d e f g h
Must
connect the
trees
What if life originated twice?
a b c d e f g h
Must
connect the
trees
Common ancestry to all life
a b c d e f g h
MRCA
How to build a tree of life?
• For	building	a	single	tree	including	all	organisms	
• Need	traits	that	are	homologous	between	all	
organisms	but	which	have	variable	states	
• Examples???	
–Un)l	the	1960s	these	were	hard	to	come	by	
–Researches	focused	instead	on	rela)onships	within	par)cular	
branches	of	the	Tree	of	Life	
–Within	sub-branches,	more	traits	were	available	to	use	(e.g.,	
bones	in	mammals)
Ernst Haeckel 1866
Ernst Haeckel 1866
Reflects some important understandings
Species evolve by diversification, not progression

Eukaryotes didn’t evolve from bacteria

Animals didn’t evolve from ciliates

Plants didn’t evolve from Fungi

Humans didn’t evolve from Chimps

These share a common ancestor from which
each diverged
Whittaker—Five Kingdoms 1969
Monera	
Pro)sta	
Plantae	
Fungi	
Animalia
Carl Woese 1977
How did he do it?
Recall the need for universal homologies
How did he do it?
Used molecular information from ribosomes
rRNA systematics
• All	cellular	organisms	have	ribosomes	
• All	have	homologous	subunits	of	the	ribosomes	including	specific	
ribosomal	proteins	and	ribosomal	RNAs	(i.e.,	these	are	universally	
homologous	genes)	
• Woese	determined	the	sequences	of	ribosomal	RNAs	from	different	
species	
• The	sequences	are	highly	similar	but	have	some	varia)on	
• Each	posi3on	in	a	rRNA	can	be	considered	a	dis)nct	character	trait	
• Each	posi)on	has	mul)ple	possible	character	states	(A,C,U,G)
Used the rRNA Sequences to build the tree of life, revealing a “hidden”
major branch!
31
Archaea: one of the most important
discoveries in microbiology

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Microbial Diversity Part 4: Tree of Life

  • 1. The Origins of Life Dr. Rachel Mackelprang Book: pg 10-24
  • 2. Origins of life: central questions •How many times did life evolve? •How is life related (what is the structure of the tree of life)? •How can we figures this out?
  • 3. The origins of life a b c d e f g h Consider the default class tree
  • 4. The origins of life a b c d e f g h If this tree included all major group of organisms… What does that imply about the number of times life evolved?
  • 5. The origins of life a b c d e f g h Consider the default class tree MRCA
  • 6. The origins of life a b c d e f g h Consider the default class tree MRCAThis implies a single common ancestor to all life, sometime before the MCRA And thus, that there is one “tree of life”
  • 7. What if life originated twice? a b c d e f g h What would you expect of a “tree of life” if there were 2 origins?
  • 8. What if life originated twice? a b c d e f g h No theoretical reason why this couldn’t have occurred. Origin 1 Origin 2
  • 9. How many trees of life? • How do we dis)nguish the two hypotheses? 1. A single origin (and thus a single tree of life) 2. Mul)ple origins (and thus mul)ple trees) • What data might support one hypothesis over the other?
  • 10. Universal homologies imply one origin •Characters that our found in the same state in all organisms are considered universal •Character (i.e., features like the smiley face) that are inherited from a common ancestor are homologous •Homologous characters that are found in the same state in all organisms are universal homologies
  • 11. Universal homologies: examples DNA, double stranded, w/ ACTG RNA w/ ACUG Translated into proteins • using tRNA • using ribosomes • using 3 letter code • using 20 core amino acids Lipoprotein cell envelope Central dogma: from gene to protein
  • 12. Universal homologies: examples • Molecular and cellular features –Use of DNA as gene)c material –Use of ACTG in DNA –Use of ACUG in RNA –Three leHer gene)c code –Central dogma (DNA->RNA->protein) –20 core amino acids in proteins • Specific complexes and genes –Ribosomal proteins and RNA –RNA polymerase proteins
  • 13. What if life originated twice? a b c d e f g h
  • 14. What if life originated twice? a b c d e f g h
  • 15. What if life originated twice? a b c d e f g h
  • 16. What if life originated twice? a b c d e f g h
  • 17. What if life originated twice? a b c d e f g h
  • 18. What if life originated twice? a b c d e f g h
  • 19. What if life originated twice? a b c d e f g h
  • 20. What if life originated twice? a b c d e f g h Problem: homologous traits need to have a single origin
  • 21. What if life originated twice? a b c d e f g h Must connect the trees
  • 22. What if life originated twice? a b c d e f g h Must connect the trees
  • 23. Common ancestry to all life a b c d e f g h MRCA
  • 24. How to build a tree of life? • For building a single tree including all organisms • Need traits that are homologous between all organisms but which have variable states • Examples??? –Un)l the 1960s these were hard to come by –Researches focused instead on rela)onships within par)cular branches of the Tree of Life –Within sub-branches, more traits were available to use (e.g., bones in mammals)
  • 26. Ernst Haeckel 1866 Reflects some important understandings Species evolve by diversification, not progression Eukaryotes didn’t evolve from bacteria Animals didn’t evolve from ciliates Plants didn’t evolve from Fungi Humans didn’t evolve from Chimps These share a common ancestor from which each diverged
  • 29. How did he do it? Recall the need for universal homologies
  • 30. How did he do it? Used molecular information from ribosomes
  • 31. rRNA systematics • All cellular organisms have ribosomes • All have homologous subunits of the ribosomes including specific ribosomal proteins and ribosomal RNAs (i.e., these are universally homologous genes) • Woese determined the sequences of ribosomal RNAs from different species • The sequences are highly similar but have some varia)on • Each posi3on in a rRNA can be considered a dis)nct character trait • Each posi)on has mul)ple possible character states (A,C,U,G) Used the rRNA Sequences to build the tree of life, revealing a “hidden” major branch!
  • 32. 31
  • 33. Archaea: one of the most important discoveries in microbiology