SlideShare a Scribd company logo
1 of 6
Download to read offline
Randomly
Amplified
Polymorphic
DNA
• Genetic markers resulting from PCR amplification of genomic DNA
segments recognized by random primers of arbitrary nucleotide
sequence.
• primers usually 10 mers
• GC rich.
• annealing temperature: low 35° C.
• amplified products are detected in agarose gels
PCR
• Buffer (containing Mg++)
• Template DNA
• 2 Primers that flank the fragment
of DNA to be Amplified
• dNTPs
• Taq DNA Polymerase (or another
thermally stable DNA polymerase)
RAPD
• Buffer (containing Mg++) usually
high Mg++ concentrations are used
lowering annealing stringency
• Template DNA
• 1 short primer (10 bases)not
known to anneal to any specific
part of the template DNA
• dNTPs
• Taq DNA Polymerase (or another
thermally stable DNA polymerase)
Advantageous
• Primer sequences are synthesized at
random (does not require any
sequences information).
• No gel transfer or hybridization is
required.
• Fast (many of the steps are
automated ).
• Relatively inexpensive
• Highly variable.
• The amount of template DNA is
extremely small.
Disadvantages
• Markers are dominant ( Presence of a
band could mean the individual is
either heterozygous or homozygous
for the sequence--can’t tell which ).

More Related Content

Similar to RAPDs (Randomly Amplified Polymorphic DNA).pdf

PCR and primer design techniques
PCR and primer design techniquesPCR and primer design techniques
PCR and primer design techniquesMesele Tilahun
 
Types of pcr
Types of pcr Types of pcr
Types of pcr Asma Gul
 
PCR 05.04.2022.pptx
PCR 05.04.2022.pptxPCR 05.04.2022.pptx
PCR 05.04.2022.pptxMadhuJ16
 
ppt.polymerase_chain_reaction_pcr (1).pdf
ppt.polymerase_chain_reaction_pcr (1).pdfppt.polymerase_chain_reaction_pcr (1).pdf
ppt.polymerase_chain_reaction_pcr (1).pdfSonuSharma887555
 
Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)NEERAJSHARMA814
 
PCR based molecular markers
PCR based molecular markersPCR based molecular markers
PCR based molecular markersDivya S
 
Molecular marker technology in studies on plant genetic diversity
Molecular marker technology in studies on plant genetic diversityMolecular marker technology in studies on plant genetic diversity
Molecular marker technology in studies on plant genetic diversityChanakya P
 
pcr BY ME.docx
pcr BY ME.docxpcr BY ME.docx
pcr BY ME.docxPandey141
 
Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)RasikaIngale
 
Pcr troubleshooting presentation
Pcr troubleshooting presentationPcr troubleshooting presentation
Pcr troubleshooting presentationSidra Shahid
 

Similar to RAPDs (Randomly Amplified Polymorphic DNA).pdf (20)

PCR and primer design techniques
PCR and primer design techniquesPCR and primer design techniques
PCR and primer design techniques
 
Types of pcr
Types of pcr Types of pcr
Types of pcr
 
PCR 05.04.2022.pptx
PCR 05.04.2022.pptxPCR 05.04.2022.pptx
PCR 05.04.2022.pptx
 
Types of PCR
Types of PCRTypes of PCR
Types of PCR
 
polymerase Chain Reaction(PCR)
polymerase Chain Reaction(PCR)polymerase Chain Reaction(PCR)
polymerase Chain Reaction(PCR)
 
Pcr
PcrPcr
Pcr
 
Concept on PCR,RAPD,AFLP
Concept on PCR,RAPD,AFLP Concept on PCR,RAPD,AFLP
Concept on PCR,RAPD,AFLP
 
BCHM 415- PCR.pptx
BCHM 415- PCR.pptxBCHM 415- PCR.pptx
BCHM 415- PCR.pptx
 
ppt.polymerase_chain_reaction_pcr (1).pdf
ppt.polymerase_chain_reaction_pcr (1).pdfppt.polymerase_chain_reaction_pcr (1).pdf
ppt.polymerase_chain_reaction_pcr (1).pdf
 
Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)
 
PCR.pptx
PCR.pptxPCR.pptx
PCR.pptx
 
PCR based molecular markers
PCR based molecular markersPCR based molecular markers
PCR based molecular markers
 
Dna sequencing
Dna sequencingDna sequencing
Dna sequencing
 
Molecular marker technology in studies on plant genetic diversity
Molecular marker technology in studies on plant genetic diversityMolecular marker technology in studies on plant genetic diversity
Molecular marker technology in studies on plant genetic diversity
 
Pcr factors SRDIXIT
Pcr factors SRDIXITPcr factors SRDIXIT
Pcr factors SRDIXIT
 
Pcr
PcrPcr
Pcr
 
Polymerize chain reaction
Polymerize chain reaction Polymerize chain reaction
Polymerize chain reaction
 
pcr BY ME.docx
pcr BY ME.docxpcr BY ME.docx
pcr BY ME.docx
 
Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)Polymerase chain reaction (pcr)
Polymerase chain reaction (pcr)
 
Pcr troubleshooting presentation
Pcr troubleshooting presentationPcr troubleshooting presentation
Pcr troubleshooting presentation
 

More from NetHelix

Base editing, prime editing, Cas13 & RNA editing and organelle base editing
Base editing, prime editing, Cas13 & RNA editing and organelle base editingBase editing, prime editing, Cas13 & RNA editing and organelle base editing
Base editing, prime editing, Cas13 & RNA editing and organelle base editingNetHelix
 
Gene transfer in plants agrobacterium.pdf
Gene transfer in plants agrobacterium.pdfGene transfer in plants agrobacterium.pdf
Gene transfer in plants agrobacterium.pdfNetHelix
 
Problems associated with the production of recombinant protein.pdf
Problems associated with the production of recombinant protein.pdfProblems associated with the production of recombinant protein.pdf
Problems associated with the production of recombinant protein.pdfNetHelix
 
gene cloning in eukaryotes (gene transfer).pdf
gene cloning in eukaryotes (gene transfer).pdfgene cloning in eukaryotes (gene transfer).pdf
gene cloning in eukaryotes (gene transfer).pdfNetHelix
 
RNA organic extraction.pdf
RNA organic extraction.pdfRNA organic extraction.pdf
RNA organic extraction.pdfNetHelix
 
PCR episode1.pdf
PCR episode1.pdfPCR episode1.pdf
PCR episode1.pdfNetHelix
 
organic Extraction level2.pdf
organic Extraction level2.pdforganic Extraction level2.pdf
organic Extraction level2.pdfNetHelix
 
intro DNA Extraction.pdf
intro DNA Extraction.pdfintro DNA Extraction.pdf
intro DNA Extraction.pdfNetHelix
 
nucleic acid structure.pdf
nucleic acid structure.pdfnucleic acid structure.pdf
nucleic acid structure.pdfNetHelix
 
DNA sequencing mapping pdf.pdf
DNA sequencing mapping pdf.pdfDNA sequencing mapping pdf.pdf
DNA sequencing mapping pdf.pdfNetHelix
 
Sequence Tagged Sites pdf.pdf
Sequence Tagged Sites pdf.pdfSequence Tagged Sites pdf.pdf
Sequence Tagged Sites pdf.pdfNetHelix
 
Fluorescent In-Situ Hybridization PDF.pdf
Fluorescent In-Situ Hybridization PDF.pdfFluorescent In-Situ Hybridization PDF.pdf
Fluorescent In-Situ Hybridization PDF.pdfNetHelix
 
restriction mapping (Physical mapping).pdf
restriction mapping (Physical mapping).pdfrestriction mapping (Physical mapping).pdf
restriction mapping (Physical mapping).pdfNetHelix
 
SSR and ISSR.pdf
SSR and ISSR.pdfSSR and ISSR.pdf
SSR and ISSR.pdfNetHelix
 
RFLPs (Restriction Fragment Length Polymerase).pdf
RFLPs (Restriction Fragment Length Polymerase).pdfRFLPs (Restriction Fragment Length Polymerase).pdf
RFLPs (Restriction Fragment Length Polymerase).pdfNetHelix
 
intro to morphological, biochemical and molecular markers.pdf
intro to morphological, biochemical and molecular markers.pdfintro to morphological, biochemical and molecular markers.pdf
intro to morphological, biochemical and molecular markers.pdfNetHelix
 
Cloning Vectors (plasmid).pdf
Cloning Vectors (plasmid).pdfCloning Vectors (plasmid).pdf
Cloning Vectors (plasmid).pdfNetHelix
 
Packaging DNA into chromosome.pdf
Packaging DNA into chromosome.pdfPackaging DNA into chromosome.pdf
Packaging DNA into chromosome.pdfNetHelix
 
genome structure and repetitive sequence.pdf
genome structure and repetitive sequence.pdfgenome structure and repetitive sequence.pdf
genome structure and repetitive sequence.pdfNetHelix
 

More from NetHelix (20)

Base editing, prime editing, Cas13 & RNA editing and organelle base editing
Base editing, prime editing, Cas13 & RNA editing and organelle base editingBase editing, prime editing, Cas13 & RNA editing and organelle base editing
Base editing, prime editing, Cas13 & RNA editing and organelle base editing
 
Gene transfer in plants agrobacterium.pdf
Gene transfer in plants agrobacterium.pdfGene transfer in plants agrobacterium.pdf
Gene transfer in plants agrobacterium.pdf
 
Problems associated with the production of recombinant protein.pdf
Problems associated with the production of recombinant protein.pdfProblems associated with the production of recombinant protein.pdf
Problems associated with the production of recombinant protein.pdf
 
gene cloning in eukaryotes (gene transfer).pdf
gene cloning in eukaryotes (gene transfer).pdfgene cloning in eukaryotes (gene transfer).pdf
gene cloning in eukaryotes (gene transfer).pdf
 
RNA organic extraction.pdf
RNA organic extraction.pdfRNA organic extraction.pdf
RNA organic extraction.pdf
 
PCR episode1.pdf
PCR episode1.pdfPCR episode1.pdf
PCR episode1.pdf
 
organic Extraction level2.pdf
organic Extraction level2.pdforganic Extraction level2.pdf
organic Extraction level2.pdf
 
intro DNA Extraction.pdf
intro DNA Extraction.pdfintro DNA Extraction.pdf
intro DNA Extraction.pdf
 
nucleic acid structure.pdf
nucleic acid structure.pdfnucleic acid structure.pdf
nucleic acid structure.pdf
 
DNA sequencing mapping pdf.pdf
DNA sequencing mapping pdf.pdfDNA sequencing mapping pdf.pdf
DNA sequencing mapping pdf.pdf
 
Sequence Tagged Sites pdf.pdf
Sequence Tagged Sites pdf.pdfSequence Tagged Sites pdf.pdf
Sequence Tagged Sites pdf.pdf
 
Fluorescent In-Situ Hybridization PDF.pdf
Fluorescent In-Situ Hybridization PDF.pdfFluorescent In-Situ Hybridization PDF.pdf
Fluorescent In-Situ Hybridization PDF.pdf
 
restriction mapping (Physical mapping).pdf
restriction mapping (Physical mapping).pdfrestriction mapping (Physical mapping).pdf
restriction mapping (Physical mapping).pdf
 
AFLPs.pdf
AFLPs.pdfAFLPs.pdf
AFLPs.pdf
 
SSR and ISSR.pdf
SSR and ISSR.pdfSSR and ISSR.pdf
SSR and ISSR.pdf
 
RFLPs (Restriction Fragment Length Polymerase).pdf
RFLPs (Restriction Fragment Length Polymerase).pdfRFLPs (Restriction Fragment Length Polymerase).pdf
RFLPs (Restriction Fragment Length Polymerase).pdf
 
intro to morphological, biochemical and molecular markers.pdf
intro to morphological, biochemical and molecular markers.pdfintro to morphological, biochemical and molecular markers.pdf
intro to morphological, biochemical and molecular markers.pdf
 
Cloning Vectors (plasmid).pdf
Cloning Vectors (plasmid).pdfCloning Vectors (plasmid).pdf
Cloning Vectors (plasmid).pdf
 
Packaging DNA into chromosome.pdf
Packaging DNA into chromosome.pdfPackaging DNA into chromosome.pdf
Packaging DNA into chromosome.pdf
 
genome structure and repetitive sequence.pdf
genome structure and repetitive sequence.pdfgenome structure and repetitive sequence.pdf
genome structure and repetitive sequence.pdf
 

Recently uploaded

Pests of jatropha_Bionomics_identification_Dr.UPR.pdf
Pests of jatropha_Bionomics_identification_Dr.UPR.pdfPests of jatropha_Bionomics_identification_Dr.UPR.pdf
Pests of jatropha_Bionomics_identification_Dr.UPR.pdfPirithiRaju
 
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.aasikanpl
 
‏‏VIRUS - 123455555555555555555555555555555555555555
‏‏VIRUS -  123455555555555555555555555555555555555555‏‏VIRUS -  123455555555555555555555555555555555555555
‏‏VIRUS - 123455555555555555555555555555555555555555kikilily0909
 
Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?Patrick Diehl
 
Pests of soyabean_Binomics_IdentificationDr.UPR.pdf
Pests of soyabean_Binomics_IdentificationDr.UPR.pdfPests of soyabean_Binomics_IdentificationDr.UPR.pdf
Pests of soyabean_Binomics_IdentificationDr.UPR.pdfPirithiRaju
 
Analytical Profile of Coleus Forskohlii | Forskolin .pptx
Analytical Profile of Coleus Forskohlii | Forskolin .pptxAnalytical Profile of Coleus Forskohlii | Forskolin .pptx
Analytical Profile of Coleus Forskohlii | Forskolin .pptxSwapnil Therkar
 
Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)DHURKADEVIBASKAR
 
Transposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.pptTransposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.pptArshadWarsi13
 
zoogeography of pakistan.pptx fauna of Pakistan
zoogeography of pakistan.pptx fauna of Pakistanzoogeography of pakistan.pptx fauna of Pakistan
zoogeography of pakistan.pptx fauna of Pakistanzohaibmir069
 
STOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptx
STOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptxSTOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptx
STOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptxMurugaveni B
 
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |aasikanpl
 
Speech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptxSpeech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptxpriyankatabhane
 
Artificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C PArtificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C PPRINCE C P
 
OECD bibliometric indicators: Selected highlights, April 2024
OECD bibliometric indicators: Selected highlights, April 2024OECD bibliometric indicators: Selected highlights, April 2024
OECD bibliometric indicators: Selected highlights, April 2024innovationoecd
 
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptxTHE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptxNandakishor Bhaurao Deshmukh
 
Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...Nistarini College, Purulia (W.B) India
 
SOLUBLE PATTERN RECOGNITION RECEPTORS.pptx
SOLUBLE PATTERN RECOGNITION RECEPTORS.pptxSOLUBLE PATTERN RECOGNITION RECEPTORS.pptx
SOLUBLE PATTERN RECOGNITION RECEPTORS.pptxkessiyaTpeter
 
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...lizamodels9
 
Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2John Carlo Rollon
 
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝soniya singh
 

Recently uploaded (20)

Pests of jatropha_Bionomics_identification_Dr.UPR.pdf
Pests of jatropha_Bionomics_identification_Dr.UPR.pdfPests of jatropha_Bionomics_identification_Dr.UPR.pdf
Pests of jatropha_Bionomics_identification_Dr.UPR.pdf
 
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
Call Girls in Mayapuri Delhi 💯Call Us 🔝9953322196🔝 💯Escort.
 
‏‏VIRUS - 123455555555555555555555555555555555555555
‏‏VIRUS -  123455555555555555555555555555555555555555‏‏VIRUS -  123455555555555555555555555555555555555555
‏‏VIRUS - 123455555555555555555555555555555555555555
 
Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?Is RISC-V ready for HPC workload? Maybe?
Is RISC-V ready for HPC workload? Maybe?
 
Pests of soyabean_Binomics_IdentificationDr.UPR.pdf
Pests of soyabean_Binomics_IdentificationDr.UPR.pdfPests of soyabean_Binomics_IdentificationDr.UPR.pdf
Pests of soyabean_Binomics_IdentificationDr.UPR.pdf
 
Analytical Profile of Coleus Forskohlii | Forskolin .pptx
Analytical Profile of Coleus Forskohlii | Forskolin .pptxAnalytical Profile of Coleus Forskohlii | Forskolin .pptx
Analytical Profile of Coleus Forskohlii | Forskolin .pptx
 
Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)Recombinant DNA technology( Transgenic plant and animal)
Recombinant DNA technology( Transgenic plant and animal)
 
Transposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.pptTransposable elements in prokaryotes.ppt
Transposable elements in prokaryotes.ppt
 
zoogeography of pakistan.pptx fauna of Pakistan
zoogeography of pakistan.pptx fauna of Pakistanzoogeography of pakistan.pptx fauna of Pakistan
zoogeography of pakistan.pptx fauna of Pakistan
 
STOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptx
STOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptxSTOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptx
STOPPED FLOW METHOD & APPLICATION MURUGAVENI B.pptx
 
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
Call Us ≽ 9953322196 ≼ Call Girls In Lajpat Nagar (Delhi) |
 
Speech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptxSpeech, hearing, noise, intelligibility.pptx
Speech, hearing, noise, intelligibility.pptx
 
Artificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C PArtificial Intelligence In Microbiology by Dr. Prince C P
Artificial Intelligence In Microbiology by Dr. Prince C P
 
OECD bibliometric indicators: Selected highlights, April 2024
OECD bibliometric indicators: Selected highlights, April 2024OECD bibliometric indicators: Selected highlights, April 2024
OECD bibliometric indicators: Selected highlights, April 2024
 
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptxTHE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
THE ROLE OF PHARMACOGNOSY IN TRADITIONAL AND MODERN SYSTEM OF MEDICINE.pptx
 
Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...Bentham & Hooker's Classification. along with the merits and demerits of the ...
Bentham & Hooker's Classification. along with the merits and demerits of the ...
 
SOLUBLE PATTERN RECOGNITION RECEPTORS.pptx
SOLUBLE PATTERN RECOGNITION RECEPTORS.pptxSOLUBLE PATTERN RECOGNITION RECEPTORS.pptx
SOLUBLE PATTERN RECOGNITION RECEPTORS.pptx
 
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
Best Call Girls In Sector 29 Gurgaon❤️8860477959 EscorTs Service In 24/7 Delh...
 
Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2Evidences of Evolution General Biology 2
Evidences of Evolution General Biology 2
 
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
Call Girls in Munirka Delhi 💯Call Us 🔝8264348440🔝
 

RAPDs (Randomly Amplified Polymorphic DNA).pdf

  • 2. • Genetic markers resulting from PCR amplification of genomic DNA segments recognized by random primers of arbitrary nucleotide sequence. • primers usually 10 mers • GC rich. • annealing temperature: low 35° C. • amplified products are detected in agarose gels
  • 3. PCR • Buffer (containing Mg++) • Template DNA • 2 Primers that flank the fragment of DNA to be Amplified • dNTPs • Taq DNA Polymerase (or another thermally stable DNA polymerase) RAPD • Buffer (containing Mg++) usually high Mg++ concentrations are used lowering annealing stringency • Template DNA • 1 short primer (10 bases)not known to anneal to any specific part of the template DNA • dNTPs • Taq DNA Polymerase (or another thermally stable DNA polymerase)
  • 4.
  • 5.
  • 6. Advantageous • Primer sequences are synthesized at random (does not require any sequences information). • No gel transfer or hybridization is required. • Fast (many of the steps are automated ). • Relatively inexpensive • Highly variable. • The amount of template DNA is extremely small. Disadvantages • Markers are dominant ( Presence of a band could mean the individual is either heterozygous or homozygous for the sequence--can’t tell which ).