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8th NUGO week Wageningen #nugo  Michael Müller@nutrigenomicsMy Personal ConclusionsWhat is health? 1 1
You are what you eat
What's healthy?
4 4
What is health? WHO 1946: “..a state of complete physical, mental, and social well-being and not merely the absence of disease or infirmity…” The ability to adapt… The ability to fully recover from diseases… 5 5
2 Meals a daywork as long as possible & embrace challenges Walter Breuning (1896 - 2011)
The Nutrigenomics Challenge Identify the chronic “two hit stress”:  2003
Metabolic homeostasis & syndrome
Controllability of complex networks Naturally occurring networks, such as those involving gene regulation, are surprisingly hard to control. To fully control a gene regulatory network, roughly 80% of the nodes should be driver nodes. (in contrast to social networks) To a certain extent this is reassuring, because it means that such networks are fairly immune to hostile takeovers: a large fraction of the network's nodes must be directly controlled for the whole of it to change.  By contrast, engineered networks are generally much easier to control, which may or may not be a good thing, depending on who is trying to control the network. This may explain also the big difference between “food & mono-target drugs”. Yang-Yu Liu, Jean-Jacques Slotine& Albert-LászlóBarabási Nature 473, 167–173, 2011
Diseases as network perturbationsMutation leading to the gene regulatory network malfunctioning 11
Network-based disease classification 12 A network-based disease classification uncovers the gaps in our experimental and theoretical knowledge. It demonstrates that only an integrated programme has the potential to provide a useful framework, by defining disease susceptibility, predicting disease outcome and identifying tailored therapeutic strategies.
Organ-specific gene expression signatures of the early phase (metabolic stress) & the late phase of metabolic syndrome       1     2     3    4    10   16                     Weeks WAT      1     2     3     4    10   16                      Weeks Muscle      1     2     3     4    10   16                     Weeks Liver      1     2     3     4   10   16                    Weeks Intestine Healthy    Unhealthy Healthy    Unhealthy Healthy    Unhealthy Healthy    Unhealthy
Phenotype plasticity 	Phenotypic plasticity is the ability of an organism to change its phenotype in response to changes in the environment (e.g. nutrition).
1 Genotype => 5 nutritional phenotypes 155 kg 76 kg
Genotype-phenotype plasticity
Understanding NutritionHow nutrients regulate our genes: via sensing molecular switches Improved organcapacity by PUFAs Am J ClinNutr. 2009; 90:415-24Am J ClinNutr. 2009;90:1656-64Mol CellBiology2009;29:6257-67 Am J ClinNutr. 2010;91:208-17BMC Genomics2009 Physiol. Genomics2009Circulation 2010Diabetes 2010 Cell Metabolism 2010 Am J Clin Nutr. 2007;86(5):1515-23 PLOS ONE 2008;3(2):e1681 BMC Genomics 2008; 9:231BMC Genomics 2008; 9:262J Biol Chem. 2008;283:22620-7Arterioscler Thromb Vasc Biol. 2009;29:969-74. Plos One 2009;4(8):e6796HEPATOLOGY 2010;51:511-522 J Clin Invest. 2004;114:94-103 J Biol Chem. 2006;28:934-44  Endocrinology. 2006;147:1508-16 Physiol Genomics. 2007;30:192-204Endocrinology. 2007;148:2753-63  BMC Genomics 2007; 8:267 Arterioscler Thromb Vasc Biol. 2007;27:2420-7
Intestinal PPAR target genes are largely regulated by dietary PUFAS/MUFAs
Intestine
Comparison intestine / liver
Dose-dependent effects of dietary fat on development of obesity in relation to intestinal differential gene expression in C57BL/6J mice PLOS one 2011
Robust & concentration dependent effects in small intestineDifferentially regulated intestinal genes by high fat diet C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 PLOS one 2011
Heat map diagrams of fat-dose dependently regulated genes, categorized according to their biological function  PLOS one 2011
Cellular localization and specific lipid metabolism-related function of fat-dose dependently regulated genes  PLOS one 2011
The intestinal tube model for lipid absorption  4 cm C1 C2 C3 C4 C5 C6 C7 C8 C9 C10              10% FAT                                45% FAT 60% FAT ?
Human nutrigenomics study“Old” & “new” biomarkers
Fish-oil supplementation induces anti-inflammatory gene expression profiles in human blood mononuclear cells Less inflammation & decreased pro-arteriosclerosis markers= Anti-immuno-senescence Bouwens et al. Am J ClinNutr. 2009
NUGO week 2011 C Buettner H VidalM RydenLing Qi P Schrauwen W d Vos C Wijmenga N Stefan
NUGO week 2011 32 L Fontana R Singh
NUGO 2011:Metabolic health = plasticity / flexibility The personal genome is the starting point & we can get comprehensive information about it (Daniel MacArthur, J Hoeijmakers, P vdSpek) => don’t forget “bioinformatics & databasing” Health is dynamic: The property to adapt to metabolic perturbations / challenges (M Huber) Feeding / fasting => autophagy => cellular homeostasis & “exercise” (R Singh) Caloric restriction => chromatin “exercise” (L Fontana) Food bioactives that modulate transcription (e.g. via nuclear receptors) or chromatin activity (nutri-epigenome) => cell & organ “exercise” (C Cummins) 33
So how to keep our metabolic health Identify chronic (non-resolving) stress using systems “perturbation” tests & deep genomics-based phenotyping (E Holmes, R Gerszten) Solve it! Less Inflammation Less Metabolic Stress (sat. fat, lipogenic foods) More Exercise (muscle & other organs) with a “challenging” lifestyle & food pattern Eat less from time to time This will be the future of Nutrigenomics research. 34
Sander KerstenLinda SandersonNatasha Georgiadi Mark BouwensLydia Afman Guido Hooiveld RinkeStienstraWilma Steegenga MeikeBunger Philip de Groot Mark Boekschoten Nicole de Wit Mohammad Ohid UllahSusan van Dijk DiederikEsser &…. Christian Trautwein Folkert Kuipers Ben van Ommen + many more THANKS

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What is health? NUGO International nutrigenomics Conference Wageningen Sept 9 2011

  • 1. 8th NUGO week Wageningen #nugo Michael Müller@nutrigenomicsMy Personal ConclusionsWhat is health? 1 1
  • 2. You are what you eat
  • 4. 4 4
  • 5. What is health? WHO 1946: “..a state of complete physical, mental, and social well-being and not merely the absence of disease or infirmity…” The ability to adapt… The ability to fully recover from diseases… 5 5
  • 6. 2 Meals a daywork as long as possible & embrace challenges Walter Breuning (1896 - 2011)
  • 7. The Nutrigenomics Challenge Identify the chronic “two hit stress”: 2003
  • 9.
  • 10. Controllability of complex networks Naturally occurring networks, such as those involving gene regulation, are surprisingly hard to control. To fully control a gene regulatory network, roughly 80% of the nodes should be driver nodes. (in contrast to social networks) To a certain extent this is reassuring, because it means that such networks are fairly immune to hostile takeovers: a large fraction of the network's nodes must be directly controlled for the whole of it to change. By contrast, engineered networks are generally much easier to control, which may or may not be a good thing, depending on who is trying to control the network. This may explain also the big difference between “food & mono-target drugs”. Yang-Yu Liu, Jean-Jacques Slotine& Albert-LászlóBarabási Nature 473, 167–173, 2011
  • 11. Diseases as network perturbationsMutation leading to the gene regulatory network malfunctioning 11
  • 12. Network-based disease classification 12 A network-based disease classification uncovers the gaps in our experimental and theoretical knowledge. It demonstrates that only an integrated programme has the potential to provide a useful framework, by defining disease susceptibility, predicting disease outcome and identifying tailored therapeutic strategies.
  • 13.
  • 14.
  • 15. Organ-specific gene expression signatures of the early phase (metabolic stress) & the late phase of metabolic syndrome 1 2 3 4 10 16 Weeks WAT 1 2 3 4 10 16 Weeks Muscle 1 2 3 4 10 16 Weeks Liver 1 2 3 4 10 16 Weeks Intestine Healthy Unhealthy Healthy Unhealthy Healthy Unhealthy Healthy Unhealthy
  • 16. Phenotype plasticity Phenotypic plasticity is the ability of an organism to change its phenotype in response to changes in the environment (e.g. nutrition).
  • 17. 1 Genotype => 5 nutritional phenotypes 155 kg 76 kg
  • 19. Understanding NutritionHow nutrients regulate our genes: via sensing molecular switches Improved organcapacity by PUFAs Am J ClinNutr. 2009; 90:415-24Am J ClinNutr. 2009;90:1656-64Mol CellBiology2009;29:6257-67 Am J ClinNutr. 2010;91:208-17BMC Genomics2009 Physiol. Genomics2009Circulation 2010Diabetes 2010 Cell Metabolism 2010 Am J Clin Nutr. 2007;86(5):1515-23 PLOS ONE 2008;3(2):e1681 BMC Genomics 2008; 9:231BMC Genomics 2008; 9:262J Biol Chem. 2008;283:22620-7Arterioscler Thromb Vasc Biol. 2009;29:969-74. Plos One 2009;4(8):e6796HEPATOLOGY 2010;51:511-522 J Clin Invest. 2004;114:94-103 J Biol Chem. 2006;28:934-44 Endocrinology. 2006;147:1508-16 Physiol Genomics. 2007;30:192-204Endocrinology. 2007;148:2753-63 BMC Genomics 2007; 8:267 Arterioscler Thromb Vasc Biol. 2007;27:2420-7
  • 20. Intestinal PPAR target genes are largely regulated by dietary PUFAS/MUFAs
  • 23.
  • 24. Dose-dependent effects of dietary fat on development of obesity in relation to intestinal differential gene expression in C57BL/6J mice PLOS one 2011
  • 25. Robust & concentration dependent effects in small intestineDifferentially regulated intestinal genes by high fat diet C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 PLOS one 2011
  • 26. Heat map diagrams of fat-dose dependently regulated genes, categorized according to their biological function PLOS one 2011
  • 27. Cellular localization and specific lipid metabolism-related function of fat-dose dependently regulated genes PLOS one 2011
  • 28. The intestinal tube model for lipid absorption 4 cm C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 10% FAT 45% FAT 60% FAT ?
  • 29. Human nutrigenomics study“Old” & “new” biomarkers
  • 30. Fish-oil supplementation induces anti-inflammatory gene expression profiles in human blood mononuclear cells Less inflammation & decreased pro-arteriosclerosis markers= Anti-immuno-senescence Bouwens et al. Am J ClinNutr. 2009
  • 31. NUGO week 2011 C Buettner H VidalM RydenLing Qi P Schrauwen W d Vos C Wijmenga N Stefan
  • 32. NUGO week 2011 32 L Fontana R Singh
  • 33. NUGO 2011:Metabolic health = plasticity / flexibility The personal genome is the starting point & we can get comprehensive information about it (Daniel MacArthur, J Hoeijmakers, P vdSpek) => don’t forget “bioinformatics & databasing” Health is dynamic: The property to adapt to metabolic perturbations / challenges (M Huber) Feeding / fasting => autophagy => cellular homeostasis & “exercise” (R Singh) Caloric restriction => chromatin “exercise” (L Fontana) Food bioactives that modulate transcription (e.g. via nuclear receptors) or chromatin activity (nutri-epigenome) => cell & organ “exercise” (C Cummins) 33
  • 34. So how to keep our metabolic health Identify chronic (non-resolving) stress using systems “perturbation” tests & deep genomics-based phenotyping (E Holmes, R Gerszten) Solve it! Less Inflammation Less Metabolic Stress (sat. fat, lipogenic foods) More Exercise (muscle & other organs) with a “challenging” lifestyle & food pattern Eat less from time to time This will be the future of Nutrigenomics research. 34
  • 35. Sander KerstenLinda SandersonNatasha Georgiadi Mark BouwensLydia Afman Guido Hooiveld RinkeStienstraWilma Steegenga MeikeBunger Philip de Groot Mark Boekschoten Nicole de Wit Mohammad Ohid UllahSusan van Dijk DiederikEsser &…. Christian Trautwein Folkert Kuipers Ben van Ommen + many more THANKS