Capsule is an layer around the bacteria cell which gives bacteria the protection and pathogenicity. Staining such an layer is difficult with the normal stains so it is necessary to stain the background and the cell itself which makes the capsule appear colourless.
Preservation of industrially important microorganisms, methods of preservation, periodic transfer, storage in saline suspension, storage in sterile soil, cryopreservation
When fresh liquid medium is inoculated with a given number of bacteria and incubated for sufficient period of time, it gives a characteristic growth pattern of bacteria.
If the bacterial population is measured periodically and log of number of viable bacteria is plotted in a graph against time, it gives a characteristic growth curve which is known as growth curve or growth cycle.
Pure culture preservation of microbes are described in detain. Different short and long term preservation are explained in detail. Methods like Agar slant cultures (Sub culturing) & Refrigeration , Mineral Oil or Liquid Paraffin Method,Saline suspension storage, Drying in Vacuum, Storage at low temperatures (Cryopreservation) and Lyophilization (Freeze drying) are included.
Capsule is an layer around the bacteria cell which gives bacteria the protection and pathogenicity. Staining such an layer is difficult with the normal stains so it is necessary to stain the background and the cell itself which makes the capsule appear colourless.
Preservation of industrially important microorganisms, methods of preservation, periodic transfer, storage in saline suspension, storage in sterile soil, cryopreservation
When fresh liquid medium is inoculated with a given number of bacteria and incubated for sufficient period of time, it gives a characteristic growth pattern of bacteria.
If the bacterial population is measured periodically and log of number of viable bacteria is plotted in a graph against time, it gives a characteristic growth curve which is known as growth curve or growth cycle.
Pure culture preservation of microbes are described in detain. Different short and long term preservation are explained in detail. Methods like Agar slant cultures (Sub culturing) & Refrigeration , Mineral Oil or Liquid Paraffin Method,Saline suspension storage, Drying in Vacuum, Storage at low temperatures (Cryopreservation) and Lyophilization (Freeze drying) are included.
COLLECTION AND TRANSPORTATION OF CLINICAL SAMPLESNCRIMS, Meerut
Principles of Sample Collection:
Aseptic precautions to minimize chances of
contamination.
Appropriate anatomic sites
Adequate volume
Adequate no. of samples
Appropriate time
Appropriate container with proper labelling
Before initiation of anti-microbials
Adequate information in request form
Giving basic concepts regarding culture media and its classification on the basis of different properties like physical state, chemical composition and utility purposes.
COLLECTION AND TRANSPORTATION OF CLINICAL SAMPLESNCRIMS, Meerut
Principles of Sample Collection:
Aseptic precautions to minimize chances of
contamination.
Appropriate anatomic sites
Adequate volume
Adequate no. of samples
Appropriate time
Appropriate container with proper labelling
Before initiation of anti-microbials
Adequate information in request form
Giving basic concepts regarding culture media and its classification on the basis of different properties like physical state, chemical composition and utility purposes.
Culture medium or growth medium is a liquid or gel designed to support the growth of microorganisms. There are different types of media suitable for growing different types of cells. Here, we will discuss microbiological cultures used for growing microbes, such as bacteria ,fungi, yeast & algae.
Chapter 10 Culture media preparation, inoculation.pptFerhanKadir
Culture media are artificially prepared media containing the required nutrients used for propagation of micro organisms.
Once the bacteria are grown we can:
1. Identify them either by presumptive lab diagnosis like Gram
stain or by definitive lab diagnosis like biochemical test
2. Test the antimicrobial sensitivity of the bacteria (drug
testing). This helps to know whether the bacteria are
sensitive or resistant to known antimicrobial drugs.
These slides explain how media preparation in microbiology lab
for bacterial culture, history of culture media, types of culture media based on concentration and ingredients and practical section.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
insect taxonomy importance systematics and classification
Types of media
1. TYPES OF culture MEDIA
SUBMITTED TO:- SUBMITTED BY:-
Dr. Suman Upadhyaya Anikesh Kr. Singh
M.Sc. FMT (1stSem)
DEM - BBAU
2. CULTURE MEDIUM
The food material on which microorganisms
are grown in the laboratory is known as
medium (pl. media) and the growth itself is
called a culture.
3. Types of culture media
Culture media can be classified on the basis of
following characterstics:
I. Consistency
II. Composition
III. Purpose
4. I. ON THE BASIS OF consistency
1. Solid medium
2. Semi-solid medium and
3. Liquid medium
5. 1. SOLID MEDIum
'Agar' is most commonly used to prepare
solid medium.
Solid medium contains agar at a
concentration of 1.5-2.0%.
Agar is golden-yellow granular
powder obtained from seaweed.
6. CONT…
It is basically a polysaccharide extract.
Agar is an ideal solidifying agent as it is :
• Bacteriologically inert, i.e. no influence on
bacterial growth.
• It remains solid at 37°C.
• It is transparent.
7. Cont…
Solid medium has physical structure and allows
bacteria to grow in physically informative or
useful ways (e.g. as colonies or in streaks).
Advantages of solid media:
• Bacteria may be identified by studying the colony
character.
• Mixed bacteria can be separated.
• Solid media is used for the isolation of bacteria as
pure culture.
8. 2. Semi-solid medium
They are prepared with agar at concentrations
of 0.5% or less.
They have soft custard like consistency.
They are useful in demonstrating bacterial
motility and separating motile from non-
motile strains.
9.
10. 3. Liquid medium
They are sometimes referred as “ broth”.
These media contains specific amounts of
nutrients but don’t have any trace of gelling
agents such as gelatin or agar.
Broth medium serves various purposes such
as propagation of large number of organisms,
fermentation studies, and various other tests.
e.g. sugar fermentation tests.
11. Cont…
It is difficult to identify all type of
microorganisms in liquid medium.
Suitable for the isolation of bacteria from
blood culturing and water analysis.
12. II. ON THE BASIS OF COMPOSITION
1. Synthetic or chemically defined medium:-
A chemically defined medium is one
prepared from purified ingredients and
whose exact composition is known.
It provides trace elements and vitamins
required by the microbe and especially a
defined carbon and nitrogen source.
13. CONT…
Glucose or glycerol are often used as carbon
sources, and ammonium salts or nitrates as
inorganic nitrogen sources.
eg: peptone water –
1% peptone + 0.5% NaCl in water.
14. 2. Non synthetic or chemically undefined medium:-
Non-synthetic medium contains at least one
component that is neither purified nor completely
characterized.
Undefined medium has some complex ingredients,
such as yeast extract, which consists of a mixture of
many, many chemical species in unknown
proportions.
For example- Nutrient broth, is derived from
cultures of yeasts
15.
16. III. ON THE BASIS OF PURPOSE
1. General purpose media/ Basal Media.
2. Enriched medium.
3. Selective medium.
4. Differential/ indicator medium.
5. Transport media.
6. Anaerobic media.
7. Assay media.
17. 1. Basal media
Basal media are basically simple media that
supports most non-fastidious bacteria.
Peptone water, nutrient broth and nutrient
agar are considered as basal medium.
These media are generally used for the
primary isolation of microorganisms.
19. 2. Enriched medium
Addition of extra nutrients in the form of
blood, serum, egg yolk etc, to basal medium
makes them enriched media.
Enriched media are used to grow nutritionally
exacting (fastidious) bacteria.
20. Cont…
Blood agar, chocolate agar, Loeffler’s serum
slope etc., are few of the enriched media.
Blood agar is prepared by adding 5-10% (by
volume) blood to a blood agar base.
Choclate agar is also known as heated blood
agar or lysed blood agar.
22. 3. Selective medium
Selective and enrichment media are designed
to inhibit unwanted commensal or
contaminating bacteria and help to recover
pathogen from a mixture of bacteria.
While selective media are agar based,
enrichment media and are liquid in
consistency.
23. Cont…
Any agar media can be made selective by
addition of certain inhibitory agents that don’t
affect the pathogen of interest.
Various approaches to make a medium
selective include addition of antibiotics, dyes,
chemicals, alteration of pH or a combination
of these.
24. Cont…
Examples of selective media include:
• Thayer Martin Agar used to recover N.gonorrhoeae.
• It usually contains the following combination of
antibiotics:
Vancomycin: which is able to kill most Gram-positive
organisms.
Colistin,: which is added to kill most Gram-negative
organisms except Neisseria.
Nystatin,: which can kill most fungi.
Trimethoprim: which inhibits Gram-negative
organisms.
25. Cont…
• Eosin methylene blue: selective for gram
negative bacteria
The dye methylene blue in the medium inhibit
the growth of gram positive bacteria
26. Cont…
• Lowenstein –Jenson medium is a
solid medium used for
Mycobacterium tuberculosis.
It contain penicillin, nalidixic
acid and malachite green to
inhibit growth of gram positive
and gram negative bacteria, in
order to limit growth to
Mycobacteria species only.
27. Cont…
• Mannitol Salt Agar and Salt Milk Agar used to
recover S.aureus contains 10% NaCl.
• Selective media such as TCBS Agar used for
isolating V. cholerae from fecal specimens
have elevated pH (8.5-8.6), which inhibits
most other bacteria.
28. Cont…
• MacConkey’s Agar used
for Enterobacteriaceae members contains bile
salt that inhibits most gram positive bacteria.
• Wilson and Blair’s Agar for recovering S.
typhi is rendered selective by the addition of
dye brilliant green.
29. 4. Differential/ indicator medium
Certain media are designed in such a way that
different bacteria can be recognized on the basis
of their colony colour.
Various approaches include incorporation of
dyes, metabolic substrates etc, so that those
bacteria that utilize them appear as differently
coloured colonies.
Differential media allow the growth of more than
one microorganism of interest but with
morphologically distinguishable colonies.
30. Cont…
Examples of selective media include:
a) MacConkey medium: Distinguish between
lactose fermenters & non lactose fermenters.
• Lactose fermenters – Pink colonies
• Non lactose fermenters – colorless colonies
31. Cont…
b) Xylose Lysine Deoxycholate Agar(XLD): Used
for the recovery of Salmonella and Shigella
species.
32. Cont…
c) Cysteine Lactose Electrolyte Deficient
Agar(CLED): For cultivation of pathogen from
urine specimen, inhibit swarming of proteus sp.
CLED, serratia
33. 5. Transport media
Transport media is used for transporting the
samples.
Clinical specimens must be transported to the
laboratory immediately after collection to
prevent overgrowth of contaminating
organisms or commensals.
This can be achieved by using transport
media.
34. Cont…
Such media prevent drying (desiccation) of
specimen, maintain the pathogen to
commensal ratio and inhibit overgrowth of
unwanted bacteria.
Eg:
– Stuart’s medium
– Buffered glycerol saline
35. Cont…
Cary Blair transport medium and
VenkatramanRamakrishnan (VR) medium are
used to transport feces from suspected
cholera patients.
Sach’s buffered glycerol saline is used to
transport feces from patients suspected to be
suffering from bacillary dysentery.
Pike’s medium is used to transport
streptococci from throat specimens.
36. 6. Anaerobic media
These media are used to grow anaerobic
organisms.
Anaerobic bacteria need special media for
growth because they need low oxygen
content, reduced oxidation –reduction
potential and extra nutrients.
Media for anaerobes may have to be
supplemented with nutrients like hemin and
vitamin K.
37. Cont…
Such media may also have to be reduced by
physical or chemical means.
Addition of 1% glucose, 0.1% thioglycollate,
0.1% ascorbic acid, 0.05% cysteine or red hot
iron filings can reduce dissolve oxygen.
Before use the medium must be boiled in
water bath to expel any dissolved oxygen and
then sealed with sterile liquid paraffin.
38. Cont…
Example of anaerobic media are:
Robertson Cooked Meat (RCM) medium is
commonly used to grow Clostridium spps.
Thioglycollate broth contains sodium
thioglycollate, glucose, cystine, yeast extract and
casein hydrolysate.