Human Digestive System: Unraveling the Intricacies of our Inner Factory
Introduction
Welcome to this comprehensive guide on the human digestive system! In this article, we will embark on a fascinating journey through the intricacies of our inner factory, exploring the processes and functions that allow our bodies to break down and absorb nutrients from the food we consume. Join us as we unravel the secrets of digestion, absorption, and elimination, shedding light on the marvelous mechanism that keeps us nourished and energized.
The Human Digestive System: An Overview
The human digestive system is a complex network of organs and processes that work together to facilitate the digestion and absorption of food. From the moment we take a bite to the final elimination of waste, this remarkable system ensures that our bodies receive the vital nutrients needed for growth, repair, and maintenance.
The Mouth: Where It All Begins
The journey of digestion commences in the mouth. As food enters our oral cavity, it undergoes the first stage of mechanical digestion through the process of chewing. The teeth break down the food into smaller pieces, increasing its surface area for efficient chemical digestion. The saliva, secreted by the salivary glands, also plays a crucial role by moistening the food and initiating the breakdown of complex carbohydrates with the enzyme amylase.
The Esophagus: A Pathway to the Stomach
Once food is sufficiently chewed and mixed with saliva, it travels down the esophagus, a muscular tube connecting the mouth to the stomach. Through rhythmic contractions known as peristalsis, the esophagus propels the food downward, allowing it to reach the stomach for further processing.
The Stomach: A Gastric Playground
The stomach serves as a temporary reservoir for food and facilitates both mechanical and chemical digestion. It churns and mixes the food with gastric juices, including hydrochloric acid and enzymes such as pepsin. This powerful combination breaks down proteins and kills harmful bacteria, preparing the food for the next phase of digestion.
The Small Intestine: The Hub of Absorption
The small intestine is where the magic of absorption truly takes place. Divided into three parts—the duodenum, jejunum, and ileum—it receives the partially digested food from the stomach. The walls of the small intestine are lined with finger-like projections called villi, which increase the surface area for nutrient absorption. Here, the nutrients are broken down into their smallest forms and are transported into the bloodstream for distribution to the body's cells.
The Large Intestine: Processing Waste
As the now-depleted food mass enters the large intestine, the focus shifts from digestion to waste processing. The large intestine absorbs water and electrolytes from the remaining undigested material, forming solid waste known as feces. The feces are then stored in the rectum until elimination through the anus occurs.
Maintenance of pH of body fluids and its disorders for undergraduate medical students and postgraduate students in medicine, paediatrics, respiratory medicine etc
Maintenance of pH of body fluids and its disorders for undergraduate medical students and postgraduate students in medicine, paediatrics, respiratory medicine etc
structure of proteins
definition of Digestion
sources of Proteins --> EXOGENEOUS SOURCES 50-100g/day and ENDOGENEOUS SOURCES 30-100g/day
Proteins DEGRADED BY --> HYDROLASES specifically PEPTIDASES(ENDOPEPTIDASES & EXOPEPTIDASES)
1. Gastric Digestion of Proteins
2. Pancreatic Digestion of Proteins
3. Digestion of Proteins by Small Intestine Enzymes
Absorption of Amino ACids by Na+Dependent, Na+ Independent, Meister Cycle or gama-glutamyl cycle
Tubular reabsorption (The Guyton and Hall physiology)Maryam Fida
It is the second step of urine formation.
It is defined as;
“ The process by which water and other substances are transported by renal tubules back to blood is called Tubular Reabsorption”.
Tubular reabsorption is highly selective.
Some substances like glucose and amino acids are completely absorbed from tubules. So, the urinary excretion is zero.
Ions such as Na+, Cl-, HCO3- are highly absorbed but rate of absorption and excretion varies, according to body needs.
Materials Not Reabsorbed
Nitrogenous waste products
Urea
Uric acid
Creatinine
Excess water
Reabsorption In Renal Tubule (The Guyton and Hall physiology)Maryam Fida
Features of PCTPCT have high capacity of active & passive re-absorption.
This is due to special cellular features of epithelial cells.
They have increased no. of mitochondria due to high metabolic activity.
brush border on luminal (apical) side.
Brush border contains protein carrier molecules to transport Na+ by co-transport mechanism with other substances (a.acids, glucose etc).
Additional sodium is transported by COUNTER-TRANSPORT that reabsorb sodium while secreting hydrogen.
About 65 % of filtered load of Na+ & water is reabsorbed in PCT.
A lower % age of Cl- is also absorbed.
In 1st half of PC tubules, Na+ is re-absorbed by co-transport along with glucose, a.acids and other solutes.
In 2nd half of PC tubules, mainly Na+ is reabsorbed with Cl- and some of glucose + a.acids remain un-absorbed.
2nd half of PCT has high conc of Cl- (140 mEq/L) as compared to 1st half (105 mEq/L).
In this section, we describe digestion and absorption of Nucleic Acids and Most of the slides are cited from:
1. Lippincott's Illustrated Review Biochemistry
2. U. Satyran Biochemistry
Dr. Haroon
The classical GI hormones are secreted by epithelial cells lining the lumen of the stomach and small intestine. These hormone-secreting cells - endocrinocytes - are interspersed among a much larger number of epithelial cells that secrete their products (acid, mucus, etc.) into the lumen or take up nutrients from the lumen. GI hormones are secreted into blood, and hence circulate systemically, where they affect function of other parts of the digestive tube, liver, pancreas, brain and a variety of other targets.
structure of proteins
definition of Digestion
sources of Proteins --> EXOGENEOUS SOURCES 50-100g/day and ENDOGENEOUS SOURCES 30-100g/day
Proteins DEGRADED BY --> HYDROLASES specifically PEPTIDASES(ENDOPEPTIDASES & EXOPEPTIDASES)
1. Gastric Digestion of Proteins
2. Pancreatic Digestion of Proteins
3. Digestion of Proteins by Small Intestine Enzymes
Absorption of Amino ACids by Na+Dependent, Na+ Independent, Meister Cycle or gama-glutamyl cycle
Tubular reabsorption (The Guyton and Hall physiology)Maryam Fida
It is the second step of urine formation.
It is defined as;
“ The process by which water and other substances are transported by renal tubules back to blood is called Tubular Reabsorption”.
Tubular reabsorption is highly selective.
Some substances like glucose and amino acids are completely absorbed from tubules. So, the urinary excretion is zero.
Ions such as Na+, Cl-, HCO3- are highly absorbed but rate of absorption and excretion varies, according to body needs.
Materials Not Reabsorbed
Nitrogenous waste products
Urea
Uric acid
Creatinine
Excess water
Reabsorption In Renal Tubule (The Guyton and Hall physiology)Maryam Fida
Features of PCTPCT have high capacity of active & passive re-absorption.
This is due to special cellular features of epithelial cells.
They have increased no. of mitochondria due to high metabolic activity.
brush border on luminal (apical) side.
Brush border contains protein carrier molecules to transport Na+ by co-transport mechanism with other substances (a.acids, glucose etc).
Additional sodium is transported by COUNTER-TRANSPORT that reabsorb sodium while secreting hydrogen.
About 65 % of filtered load of Na+ & water is reabsorbed in PCT.
A lower % age of Cl- is also absorbed.
In 1st half of PC tubules, Na+ is re-absorbed by co-transport along with glucose, a.acids and other solutes.
In 2nd half of PC tubules, mainly Na+ is reabsorbed with Cl- and some of glucose + a.acids remain un-absorbed.
2nd half of PCT has high conc of Cl- (140 mEq/L) as compared to 1st half (105 mEq/L).
In this section, we describe digestion and absorption of Nucleic Acids and Most of the slides are cited from:
1. Lippincott's Illustrated Review Biochemistry
2. U. Satyran Biochemistry
Dr. Haroon
The classical GI hormones are secreted by epithelial cells lining the lumen of the stomach and small intestine. These hormone-secreting cells - endocrinocytes - are interspersed among a much larger number of epithelial cells that secrete their products (acid, mucus, etc.) into the lumen or take up nutrients from the lumen. GI hormones are secreted into blood, and hence circulate systemically, where they affect function of other parts of the digestive tube, liver, pancreas, brain and a variety of other targets.
this lecture gives detailed account of functions of liver as an organ, secretion, regulation and functions of biliary secretion. exocrine and endocrine functions of pancreas. composition of pancreatic secretions
The human digestive system consists of two major component one is the accessory organ like liver pancreas gall bladder salivary gland and other is the Alimentary canal which is started from oral cavity and ends on anal cavity.
in this ppt all parts are described briefly for better understanding.
Bile is a bitter-tasting, dark green to yellowish brown fluid, produced by the liver , it is stored in the gallbladder and upon eating is discharged into the duodenum. .
The principal function of the gallbladder is to serve as a storage reservoir for bile.
The main components of bile are water, bile salts, bile pigments, and cholesterol
Bile salts act as emulsifying agents in the digestion and absorption of fats. Cholesterol and bile pigments from the breakdown of hemoglobin are excreted from the body in the bile.
Physical properties;
Hepatic bile: pH 7.4, colour is golden yellow ,
Bladder bile: pH 6.8, color is green dark to yellow (darker)
Volume of bile produced reaches to one liter of bile per day (depending on body size).
Life processes are the fundamental activities that living organisms perform to maintain their existence and carry out their biological functions. These processes are essential for an organism's growth, development, and survival. Here are some of the key life processes:
Nutrition: Nutrition involves the intake of food or nutrients to provide energy and essential substances for the growth, repair, and functioning of the organism's body. It includes processes such as ingestion, digestion, absorption, and assimilation of nutrients.
Respiration: Respiration is the process of exchanging gases (usually oxygen and carbon dioxide) with the environment. In cellular respiration, oxygen is used to break down nutrients and release energy for the cell's activities.
Transportation: Transportation is the movement of materials (e.g., nutrients, gases, hormones) throughout the organism's body, facilitating the distribution of essential substances and the removal of waste products.
Excretion: Excretion is the elimination of metabolic waste products and harmful substances from the organism's body. It is essential to maintain a proper balance of chemicals and prevent toxic buildup.
Growth: Growth is the process by which an organism increases in size and complexity. It involves cell division, differentiation, and the addition of new cells and tissues.
Reproduction: Reproduction is the process by which organisms produce offspring, ensuring the continuation of their species. It can be sexual or asexual, depending on the organism.
Response to Stimuli: Organisms respond to changes in their environment through various mechanisms. This responsiveness enables them to adapt to their surroundings and ensure their survival.
Regulation (Homeostasis): Homeostasis is the ability of an organism to maintain a stable internal environment despite external changes. It involves various physiological processes that keep the body's conditions within a certain range.
Metabolism: Metabolism refers to all the chemical reactions that occur within an organism. These reactions are responsible for converting nutrients into energy and building and repairing cellular components.
These life processes are essential for the proper functioning of all living organisms, from single-celled organisms to complex multicellular beings. Each process plays a crucial role in ensuring the overall health and survival of the organism.
Mandayam Osuri Parthasarathy Yengar, known as M.O.P. Yengar, was a highly accomplished botanist who made significant contributions to the study of plant taxonomy and systematics.
Born on August 6, 1916, in Bangalore, India, Yengar developed a profound fascination for plants at an early age. He pursued his passion by earning a Bachelor of Science degree from Bangalore University, followed by a Master's degree in Botany from the esteemed University of Cambridge in England.
Yengar's expertise centered on the flora of India, specifically the Western Ghats region. He conducted extensive botanical surveys, meticulously collecting and identifying numerous plant species. His work greatly enhanced our understanding of the diverse biodiversity in that area.
Throughout his career, Yengar authored numerous scholarly papers and publications that showcased his meticulous research and extensive knowledge of plant taxonomy. He specialized in the classification and identification of grasses and sedges, making significant contributions to their categorization.
Yengar's remarkable contributions earned him well-deserved recognition and respect within the scientific community. He received numerous awards and honors, including the prestigious Hooker Award from the Botanical Survey of India, in acknowledgement of his exceptional contributions to the field of botany.
Apart from his scientific endeavors, Yengar was devoted to teaching and mentoring future botanists. He served as a professor at several universities in India, inspiring and nurturing young minds with his passion for plants.
The legacy of M.O.P. Yengar as a botanist continues to exert a profound influence on the field of plant taxonomy. His meticulous research, extensive knowledge, and unwavering dedication to the study and preservation of India's botanical diversity have left an enduring impact on the scientific community, serving as an inspiration to aspiring botanists worldwide.
While Mandayam Osuri Parthasarathy Yengar was a highly accomplished botanist, it is important to acknowledge that no individual is without their limitations or drawbacks. Here are 20 potential points that could be considered as drawbacks or areas where Yengar may have faced challenges:
Limited focus: Yengar's expertise primarily revolved around the flora of India, particularly the Western Ghats region, which may have limited his contributions to a broader global context.
Lack of specialization: Although Yengar made significant contributions to plant taxonomy, his specialization in grasses and sedges may have resulted in a narrower scope of research.
Limited fieldwork: While Yengar conducted extensive botanical surveys, there could have been constraints on his ability to explore more remote or inaccessible regions, potentially limiting the comprehensiveness of his research.
Language barriers: Yengar's research and publications may have been primarily in English, which could have limited the accessibility and dissemination
Identity formation is the fundamental development task of psychological maturity.
It is a striving to achieve unified, integrated sense of self.
Identity is a definition of self shared by the person, other people and society at large.
Human Dynamics is identifies fundamental distinctions in human functioning that cross age, culture, race, and gender.
When the differences are recognized and understood, people are better able to appreciate their diverse ways of functioning, and to relate, manage, parent and teach in ways that accommodate the differences, enabling all to function at their individual and collective best.
Mineral Resources
1. Use and over exploitation
2. Minerals and their ores extraction
3. Mine Safety
4. Case Study
5. Environmental Problems
The environmental damage caused by mining activities are as follows:
1. Devegetation and defacing of landscape
2. Subsidence of land
3. Groundwater contamination
4. Surface water pollution
5. Air pollution
6. Occupational health hazard
1. absorption: passage of digested products from the intestinal lumen through mucosal cells and into the bloodstream or lacteals
2. chemical digestion: enzymatic breakdown of food
3. chyme: soupy liquid created when food is mixed with
digestive juices
4. defecation: elimination of undigested substances from the
body in the form of feces
5. ingestion: taking food into the GI tract through the mouth
6. mastication: chewing
7. mechanical digestion: chewing, mixing, and segmentation
that prepares food for chemical digestion
8. peristalsis: muscular contractions and relaxations that propel
food through the GI tract
9. propulsion: voluntary process of swallowing and the
involuntary process of peristalsis that moves food through the
digestive tract
10. segmentation: alternating contractions and relaxations of
non-adjacent segments of the intestine that move food
forward and backward, breaking it apart and mixing it with
digestive juices
Project work, Field trips, Laboratory work, Journal writing, concept mapping,...DeepanshuYadav2
The key focus and desired outcomes for Project Work are:
1. Communication
2. Students can express their ideas clearly and effectively, both verbally and in written form.
3. Collaboration
4. Students can work as a team to achieve common goals.
5. Knowledge application
6. Students are able to make links across different areas of knowledge and to generate, develop and evaluate ideas and information related to the project.
7. Independent learning
8. Students are able to learn on their own, reflect on their learning and improve upon it.
HYDROXY ACIDS:- MALIC, TARTARIC AND CITRIC ACIDSDeepanshuYadav2
Hydroxy acids, also known as polycarboxylic acids, has two carboxylic groups, at least. They can also present one carboxylic group or a hydroxyl group with a ketone. The most common hydroxy acids used to make multicomponent complexes with cyclodextrin are:
1.citric acid,
2. tartaric acid,
3. glycolic acid,
4. oxalic acid.
The plants of this family are found throughout the world. However, they are not found in arctic regions. In our country the family is represented by several genera such as, Euphorbia, Ricinus, Phyllanthus, Croton, Pedilanthus, etc. In the desert regions of Africa and elsewhere the family is represented by cactus-like plants of different species of Euphorbia.
Heath like Euphorbias are quite common in Australia. In Britain only two genera, i.e., Euphorbia and Mercurialis are found, which are represented by sixteen and two species respectively.
1. DEFINITION
These are the membranes which do not form any part of
the embryo proper but performs various functions which
assist in the development of the embryo . These are
discarded at the time of hatching. These membranes
formed outside the embryo.
2. Types of Extra Embryonic Membranes
Yolk Sac
Amnion
Chorion
Allantois
3.Discussed Their
At Time of ORIGIN
It's FUNCTION
After HATCHING
4. AMNIOTIC CAVITY
............................END......................................................
Strategies of Resolving Commonly Experienced ConflictsDeepanshuYadav2
1. CONFLICT ?
Conflict can be defined as an expressed struggle between at least interdependent parties, who perceive that incompatible goals, scare resources, or interference from others are preventing them from achieving their goals.
2. TYPES OF CONFLICTS
Intrapersonal Conflict
Interpersonal Conflict
Intergroup Conflict
Organizational Conflict
3. Conflict Management
Identify the boundaries of the conflict, the areas of agreement and disagreement, and the extent of each person's aims.
Understand the factors that limit the possibilities of managing the conflict constructively.
Be aware of whether more than one issue is involved.
Be open to the ideas, feelings, and attitudes expressed by the people involved.
Be willing to accept outside help to mediate the conflict.
CONFLICT RESOLUTION STRATEGIES
CONTENT OUTLINE
▰INTRODUCTION
▰MAIN OBJECTIVES
▰SALIENT FEATURES
▰MATERIAL’S PRODUCED
▰MERITS
▰DEMERITS
PHILOSOPHY BEHIND HPP
▰Physics is for everyone.
▰A coherent selection within physics is possible.
▰Doing physics goes beyond physics.
▰Individual require a flexible course.
▰A multimedia system simulates better learning.
▰The time has come to teach science as one of the humanities.
▰Physics course should be rewarding to take.
▰Physics course should be rewarding to teach.
COURSE OUTLINE OF HARVARD PROJECT PHYSICS
▰CONCEPTS OF MOTION
▰MOTION IN THE HEAVENS
▰THE TRIUMPH OF MECHANICS
▰LIGHT AND ELECTROMAGNETISM
▰MODELS OF THE ATOM
▰THE NUCLEUS
MATERIAL’S PRODUCED
▰Textbook (Project Physics Text)
▰Tests
▰Handbook
▰Students Guide
▰Brief film loops
▰Student laboratory manual
CONCLUSION
▰The Harvard Project Physics curriculum is a masterpiece. Although this
was created in the 1960's and mainly in use during the 1970’s.
▰The adaptability of the materials would allow teachers incorporate new
teaching idea while still using the framework of Project Physics.
▰With a great deal of hands on activities and a focus on literacy, the
curriculum would meet the goals set forth by most school districts today.
▰HPP is a course that altered how all future science curriculums would be
developed.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
5. Mastication (Chewing)
•Mechanical breakdown of large
food particles into smaller ones in
the mouth.
•Increase exposed surface area to
enzymes and help swallowing.
Forming bolus.
6. Salivary Secretion
Saliva is secreted primarily by three pairs of glands:
1. the parotid glands: 20%
2. the submandibular: 75%.
3. the sublingual glands: 5%.
4. many small buccal glands in mouth cavity.
7. Salivary Secretion
Saliva (Water- 99.5%) (Solids-0.5%)
•800- 1500 ml/day with proteins & electrolytes
•pH→ 6- 7.0 ( 8.0 during active secretion)
•Hypotonic ( Na+& Cl- less , K+& HCO3 more than plasma
•Contains
IgA,
lysozyme,
lactoferrin,
mucin
prolin rich proteins
8. Functions of Saliva
Cooling hot foods.
Neutralizing acid.
Lysozyme attacks the walls of bacteria.
Antibodies (immune globulin IgA)
destroy oral pathogenic bacteria.
9. Digestive Functions Of Saliva
• Saliva has 3 digestive enzymes, namely salivary amylase, maltase and lingual
lipase.
Salivary Amylase – it is a carbohydrate – digestive enzyme. It acts on cooked
or boiled starch and converts into dextrin and maltose.
Optimum pH, necessary for the activation of salivary amylase is 6. salivary
amylase cannot act on cellulose.
Maltase – It is present only in traces in human saliva and it converts maltose
into glucose.
Lingual Lipase – lingual lipase is a lipid digesting (lipolytic) enzyme.
It is secreted from serous glands situated on the posterior aspect of the tongue.
It digests milk fats. It hydrolyses triglycerides into fatty acids and
diacylglycerol.
16. Digestive Function
Pepsin – it is secreted as inactive pepsinogen. Pepsinogen is converted
Into pepsin by HCL. Optimum pH, for activation of pepsinogen pH
1.0-2.0 .
Action of Pepsin – it converts proteins into proteoses, peptones, and
polypeptides, pepsin also causes curdling and digestion of milk (Casein).
Gastric Lipase – it is a weak lipolytic enzyme when compared to pancreatic lipase. It
is active only when the pH, is between 4 and 5 and becomes inactive at pH, below
2.5.
21. Functions of the liver
Liver acts as a chemical factory, an excretory
system, an exocrine and an endocrine gland
1. Vascular Functions for Storage and Filtration of Blood:
store 200-400 ml. of blood Kupffer cells(remove 90% of bacteria in
the portal venous blood (the colon bacilli)
22. 2. Metabolic Functions:
Carbohydrate metabolism: (glucostat" ) Glycogenesis-
glycogenolysis- gluconeogenesis- Cori cycle (formation of glycogen
from lactic acid)
Lipid metabolism: oxidation of fatty acids - Formation of
lipoproteins - lipogenesis
Protein metabolism: Deamination of amino acids - Formation of
urea , plasma proteins, most of coagulation factors& non-essential amino
acids
Storage of vitamins: Such as vitamin A, D, E, K and B12. &
iron
Detoxification or excretion of drugs, hormones and other
substances
23. 3. Secretory and excretory
functions: Formation of bile:
• Bile is required for the digestion and
absorption of fats ( bile salts) and for the
excretion of water-insoluble substances
such as cholesterol and bilirubin
• Secretion is continuous through all the day
& is stored in gall bladder
24. Composition of bile
• 500-1500 ml/day
• Fresh bile is alkaline
• Becomes acidic during storage in gall
bladder to prevent precipitation of
calcium
25. Bile Salts
•
•
– Primary bile acids: cholic acid and
chenodeoxycholic acid.
•
– Secondary bile acids: In the colon, bacteria
convert cholic acid to deoxycholic acid and
chenodeoxycholic acid to lithocholic acid.
– Sodium and potassium salts of bile acids
conjugated to glycine or taurine ( glycocholic
& taurocholic acids)
– The bile acids are synthesized from
cholesterol.
26. 1.Digestion of fat
a. Activation of pancreatic lipase
b. Emulsification of fat preparatory to its
digestion and absorption by
- detergent action reduce surface →
tension between fat globules
- hydrotropic action
Function of bile salts
27. 2. Absorption of fat & fat soluble
vitamins-
form micelles, micelles are bile acid-lipid
water-soluble complexes that play an
important role in keeping lipids in
solution and transporting them to the
brush border of the intestinal epithelial
cells, where they are absorbed.
28. The Gallbladder
Functions of the Gallbladder:
Storage of Bile Concentration of
Bile
removal of sodium by the gallbladder mucosa
through an active transport mechanism, which
passively draws chloride, bicarbonate and water.
Prevention of marked rise in the Intrabiliary
pressure
Secretion of white bile Acidification of Bile:
(absorption of bicarbonate)
29. Control of Gallbladder Emptying
= Cholagogues
Cholecytokinin (CCK)
major stimulus for gallbladder contraction
and sphincter of Oddi relaxation.
Vagal stimulation
cephalic stage of digestion and vago-vagal
reflex during the gastric phase of digestion
30.
31. PARTS
The small intestine is
divided into three
structural parts:
(I)The duodenum
(II)The jejunum
(III)The ileum
32. • The duodenum is a short structure ranging
from 20 cm to 25 cm in length, and shaped
like a "C".
• The jejunum is the midsection of the small
intestine, connecting the duodenum to the
ileum. It is about 2.5 m long.
• The ileum is the final section of the small
intestine. It is about 3 m long, and contains
villi similar to the jejunum.
33. FUNCTIONS
Digestion
• The small intestine is where most
chemical digestion takes place.
• Many of the digestive enzymes that act in the
small intestine are secreted by the pancreas
and liver and enter the small intestine via the
pancreatic duct.
• Digestion of proteins & carbohydrate
38. 2. Pancreatic juice is stimulated by the release
of
a. Secretin
b. Cholecystokinin
c. Enterokinase
d. Both (a) and (b)
39. Answer : (D) Both (a) and (b)
Secretin & Cholecystokinin
40. 3. Enterokinase helps in the conversion of
a. Lactose to Sucrose
b. Trypsinogen into trypsin
c. Pepsinogen into pepsin
d. Proteins into Polypeptide