Distributed biological computation with multicellular engineered networks
- Study engineered yeast consortia to perform complex Boolean logic functions by compartmentalizing simple logic in individual strains and connecting via cell-cell communication using alpha-factor pheromone system.
- Constructed library of 16 yeast cell modules responding to stimuli and producing GFP or alpha-factor. Successfully combined modules to produce 2 and 3-input logic functions.
- Quantified single-cell outputs and demonstrated basic logic gates including NOT, AND, and NOR using the engineered yeast consortia.
The document summarizes the plant microbiome, including its composition, core microbiota, and dynamics over time. It discusses how microorganisms colonize plants by sensing signals, uptaking metabolites, and evading defenses. Microbial interactions and functions like nutrient acquisition, disease resistance, and stress tolerance are also covered. While research has made progress understanding bacterial and fungal communities, gaps remain regarding other microorganisms and incorporating the microbiome into plant breeding.
Rhizobium are soil bacteria that form symbiotic relationships with legume plants like peas and soybeans. The bacteria infect the roots of the plants and form nodules where they express nitrogenase, an enzyme that fixes atmospheric nitrogen into a form usable by the plant. In return, the plant provides the bacteria with nutrients. Key genes involved include nod genes for infection and nodule formation, and nif and fix genes for nitrogen fixation. The nitrogen fixation process requires low-oxygen conditions within the nodule. This mutually beneficial relationship provides fixed nitrogen to the plants while the bacteria receive carbon sources.
Microbiomes in Agriculture, Food, Health and the EnvironmentJonathan Eisen
The document outlines an agenda for a meeting on microbiomes in agriculture, food, health and the environment. The meeting will include four panels discussing the impacts of human and animal microbiomes on food and health, the impacts of microbiomes on plants and agriculture, and the impacts of microbiomes on the environment. It also includes background information on microbiomes and their importance in various contexts.
Role of Phylloplane Bacteria in plant disease management MrChuha
Phylloplane bacteria inhabit plant leaf surfaces and play various roles in plant health and disease management. These bacteria form complex communities on leaves alongside fungi, algae, and other microbes. Phylloplane microbes can protect plants by producing antimicrobial compounds that inhibit pathogenic fungi and bacteria, or by inducing systemic resistance in plants. They also promote plant growth through the production of plant hormones. However, phylloplane bacterial communities are influenced by environmental factors like temperature, humidity, light, and pollution as well as the plant leaf properties themselves.
Phytoalexins are toxic chemical compounds produced by plants in response to infection by parasites or pathogens. They act as a defense mechanism against invading fungi or bacteria. Hundreds of phytoalexins have been characterized, mostly in the families Fabaceae and Solanaceae. They are produced through the shikimic acid pathway and are often fungistatic rather than fungicidal. Important phytoalexins include pisatin, phaseollin, glyceollin and gossypol. In addition to their role in plant defense, many phytoalexins have potential health benefits for humans such as antioxidant, anti-inflammatory and anticancer properties.
This document discusses plant growth promoting rhizobacteria (PGPR). It begins by defining PGPR as beneficial bacteria that colonize plant roots and promote plant growth. It then covers the classification, characteristics, and mechanisms of action of PGPR, including direct mechanisms like nitrogen fixation, phosphate solubilization, and phytohormone production as well as indirect mechanisms like siderophore production and induced systemic resistance. The document also discusses the roles, commercialization, and importance of PGPR as biofertilizers for sustainable agriculture.
This document provides a history of plant pathology and microbiology, beginning in the 17th century with early microscope observations of bacteria and fungi. Key developments include identifying the role of microorganisms in causing plant diseases, discovering the life cycles of various pathogens, and developing control methods like fungicides. Important figures ranged from Dutch scientist Anton van Leeuwenhoek in the 1600s to modern scientists like Norman Borlaug who developed disease-resistant wheat varieties enabling the Green Revolution in the 1900s. The history also covers the development of plant pathology specifically in India starting in the late 1800s.
Endophytic microbes live within plant tissues without causing harm and can benefit plants through various mechanisms. This document discusses endophytic bacteria and fungi, their transmission within plants, and how they can promote plant growth, act as biocontrol agents, and increase stress tolerance in plants. Specifically, endophytes produce plant hormones, fix nitrogen, make nutrients more available, and induce systemic resistance to pathogens or tolerance to stresses like drought. Their interactions with plants demonstrate potential for agriculture and phytoremediation.
The document summarizes the plant microbiome, including its composition, core microbiota, and dynamics over time. It discusses how microorganisms colonize plants by sensing signals, uptaking metabolites, and evading defenses. Microbial interactions and functions like nutrient acquisition, disease resistance, and stress tolerance are also covered. While research has made progress understanding bacterial and fungal communities, gaps remain regarding other microorganisms and incorporating the microbiome into plant breeding.
Rhizobium are soil bacteria that form symbiotic relationships with legume plants like peas and soybeans. The bacteria infect the roots of the plants and form nodules where they express nitrogenase, an enzyme that fixes atmospheric nitrogen into a form usable by the plant. In return, the plant provides the bacteria with nutrients. Key genes involved include nod genes for infection and nodule formation, and nif and fix genes for nitrogen fixation. The nitrogen fixation process requires low-oxygen conditions within the nodule. This mutually beneficial relationship provides fixed nitrogen to the plants while the bacteria receive carbon sources.
Microbiomes in Agriculture, Food, Health and the EnvironmentJonathan Eisen
The document outlines an agenda for a meeting on microbiomes in agriculture, food, health and the environment. The meeting will include four panels discussing the impacts of human and animal microbiomes on food and health, the impacts of microbiomes on plants and agriculture, and the impacts of microbiomes on the environment. It also includes background information on microbiomes and their importance in various contexts.
Role of Phylloplane Bacteria in plant disease management MrChuha
Phylloplane bacteria inhabit plant leaf surfaces and play various roles in plant health and disease management. These bacteria form complex communities on leaves alongside fungi, algae, and other microbes. Phylloplane microbes can protect plants by producing antimicrobial compounds that inhibit pathogenic fungi and bacteria, or by inducing systemic resistance in plants. They also promote plant growth through the production of plant hormones. However, phylloplane bacterial communities are influenced by environmental factors like temperature, humidity, light, and pollution as well as the plant leaf properties themselves.
Phytoalexins are toxic chemical compounds produced by plants in response to infection by parasites or pathogens. They act as a defense mechanism against invading fungi or bacteria. Hundreds of phytoalexins have been characterized, mostly in the families Fabaceae and Solanaceae. They are produced through the shikimic acid pathway and are often fungistatic rather than fungicidal. Important phytoalexins include pisatin, phaseollin, glyceollin and gossypol. In addition to their role in plant defense, many phytoalexins have potential health benefits for humans such as antioxidant, anti-inflammatory and anticancer properties.
This document discusses plant growth promoting rhizobacteria (PGPR). It begins by defining PGPR as beneficial bacteria that colonize plant roots and promote plant growth. It then covers the classification, characteristics, and mechanisms of action of PGPR, including direct mechanisms like nitrogen fixation, phosphate solubilization, and phytohormone production as well as indirect mechanisms like siderophore production and induced systemic resistance. The document also discusses the roles, commercialization, and importance of PGPR as biofertilizers for sustainable agriculture.
This document provides a history of plant pathology and microbiology, beginning in the 17th century with early microscope observations of bacteria and fungi. Key developments include identifying the role of microorganisms in causing plant diseases, discovering the life cycles of various pathogens, and developing control methods like fungicides. Important figures ranged from Dutch scientist Anton van Leeuwenhoek in the 1600s to modern scientists like Norman Borlaug who developed disease-resistant wheat varieties enabling the Green Revolution in the 1900s. The history also covers the development of plant pathology specifically in India starting in the late 1800s.
Endophytic microbes live within plant tissues without causing harm and can benefit plants through various mechanisms. This document discusses endophytic bacteria and fungi, their transmission within plants, and how they can promote plant growth, act as biocontrol agents, and increase stress tolerance in plants. Specifically, endophytes produce plant hormones, fix nitrogen, make nutrients more available, and induce systemic resistance to pathogens or tolerance to stresses like drought. Their interactions with plants demonstrate potential for agriculture and phytoremediation.
Biosaftey issues related to gm crops and transgenic variety release Sachin Ekatpure
The document discusses issues related to biosafety and registration of transgenic agricultural organisms. It outlines three main biosafety concerns: environmental safety, food safety for human and animal health, and risk management. Some potential environmental risks discussed include effects on non-target organisms, development of insect resistance, gene flow, increased weediness, loss of biodiversity, changes in soil ecology, and genetic contamination. Food safety concerns include toxicity, allergenicity, and unintended effects. The document also describes India's biosafety regulatory framework and approval process for transgenic crops, which involves biosafety assessment and approval from multiple government committees and agencies before crops can be cultivated and marketed.
Plant growth promoting bacteria (PGPB) include rhizosphere and phyllosphere bacteria that benefit plants. PGPB in the rhizosphere, called plant growth promoting rhizobacteria (PGPR), were first described in the late 1970s. They are root-colonizing bacteria that fix nitrogen, produce phytohormones and siderophores, and inhibit pathogens through antibiosis and competition. PGPB diversity includes genera like Pseudomonas, Bacillus, Azospirillum, and Burkholderia. PGPB promote plant growth through various mechanisms and show potential for use in biocontrol, but face challenges in selection, characterization, field application, and commercialization due to natural variation and
Endophyte(by: elham lasemi PhD of nematology)Elham Lasemi
This document discusses endophytes and their potential use in sustainable agriculture. It defines endophytes as microorganisms that live inside plants without causing disease. Common endophytes include fungi, bacteria, and actinomycetes. Endophytes can have mutualistic relationships with plants, providing benefits like heat and drought tolerance, pathogen resistance, and production of valuable compounds. Molecular studies of endophytes can provide insights into their interactions with hosts and roles in nutrient cycling, bioremediation, and biocontrol. Their applications include improving plant growth, producing bioactive compounds, and reducing environmental waste.
The document discusses Plant Growth Promoting Rhizobacteria (PGPR), including their importance and role in agriculture. It defines PGPR, classifies them into two types, and describes their mechanisms of action such as nitrogen fixation, phosphate solubilization, siderophore production, and phytohormone production. The document outlines PGPR's role as phytostimulators, in abiotic stress tolerance, as biofertilizers, and biopesticides. It discusses the commercialization and future research of PGPR to potentially replace chemical fertilizers and pesticides.
This document discusses biofertilizers, which are living organisms that enrich soil nutrients. It covers various types of biofertilizers including bacterial (Rhizobium, Azotobacter, Azospirillum), cyanobacterial, mycorrhizal, phosphorus solubilizing, and siderophores biofertilizers. The document explains how these microorganisms work to fix nitrogen, solubilize phosphorus, decompose organic matter, and increase nutrient availability and crop yields. It also provides details on commercial biofertilizer production and lists important microorganism species and their applications in agriculture.
Improvement of Horticultural Crops for Abiotic Stress ToleranceEtalesh Goutam
This presentation was being presented by Etalesh Goutam (M.Sc. Horticulture; 2018-2020) in the master seminar at Department of Horticulture, H.N.B. Garhwal University, Srinagar (Garhwal) Uttarakhand- 246174
This document discusses induced systemic resistance (ISR) in plants. It provides historical context on studies of induced resistance dating back to the late 1800s. ISR is defined as a phenomenon where treatment with certain chemicals or pathogens activates a plant's defenses throughout the plant. Key findings include:
- ISR is activated by rhizobacteria and involves jasmonic acid and ethylene signaling rather than salicylic acid signaling as in systemic acquired resistance.
- Several bacteria, fungi, chemicals, and elicitors are reported to induce ISR through different signaling pathways and defense responses.
- Further research is needed to fully understand ISR signaling and apply it effectively in fields to control plant diseases.
Phytohormones are small molecules produced within plants that govern diverse physiological processes, including plant defense. Hormonal interactions collectively form hormone signaling networks, which mediate immunity as well as growth and abiotic stress responses.
Citrus canker is a bacterial disease that affects citrus plants. It is caused by the bacteria Xanthomonas citri. The disease causes small yellow lesions on leaves, twigs, fruits that enlarge and turn brown. Severe infections can reduce fruit quality and market value. The bacteria enters through wounds or stomata and spreads through rain splashing or insects. Control measures include removing infected plants, using disease-free nursery stock, antibiotic sprays, and resistant varieties.
PGPR can promote sustainable agriculture in 3 ways:
1. They fix atmospheric nitrogen into a form plants can use through nitrogen-fixing bacteria like Rhizobium.
2. They solubilize insoluble phosphorus and other nutrients like potassium through organic acid production, making them available to plants.
3. They produce plant hormones like auxins and cytokinins that stimulate plant growth and help plants withstand stresses.
Genetic engineering for biotic stress toleranceSachin Ekatpure
This document discusses genetic engineering approaches for improving biotic stress tolerance in plants. It focuses on engineering resistance to herbicides, insects, fungi and bacteria. For herbicide resistance, genes have been introduced that encode herbicide-insensitive versions of the EPSPS enzyme or enzymes that can degrade herbicides. For insect resistance, genes from Bacillus thuringiensis encoding cry toxins have been widely used, as well as genes encoding protease inhibitors, lectins, and chitinases. For resistance to fungi and bacteria, genes involved in the plant's incompatible hypersensitive response have potential for engineering resistance.
This document discusses phosphorus uptake by mycorrhizal fungi. It outlines two pathways for phosphorus uptake - the direct pathway where plants absorb phosphorus directly from the soil, and the mycorrhizal pathway where a symbiotic relationship with mycorrhizal fungi allows for greater phosphorus absorption. The mycorrhizal pathway involves mycorrhizal fungi extending their hyphae into the soil to absorb phosphorus, which is then transported to the plant. Mycorrhizal associations are significant as they improve plant nutrition and phosphorus solubility in soil.
This document discusses the potential benefits of genetically modified (GM) crops for long-term food and nutritional security. It notes that hundreds of millions of people worldwide suffer from malnutrition and hunger. GM crops could help address this by developing varieties that are drought resistant, salt tolerant, or more nutritious. Current GM crops include Bt cotton, golden rice, Bt brinjal, flavr savr tomato, Bt corn, and roundup ready crops. The document argues that with further development, GM technology could yield crops with improved yields, reduced pesticide use, enhanced nutrition, and other benefits to help ensure global food security.
Plant growth-promoting mechanisms of endophytesThe Tiny Domain
The global changes in climate and increasing population have unfortunate effects in food production and will become insufficient to feed the world. The green revolution could alleviate poor crop production by using high yielding varieties and use of chemical fertilizers and agrochemicals. But excessive use of chemical fertilizers and agrochemicals has resulted in the deterioration of soil fertility. Hence, agronomic practices are moving toward sustainable and environment friendly approach.
Diseases resistance and defence mechanismsRAMALINGAM K
This document summarizes plant resistance to pathogens and the mechanisms involved. It discusses two main types of resistance - horizontal (polygenic) and vertical (monogenic). It also describes various pre-existing and induced structural defenses plants employ, such as waxes, thickened cell walls, and formation of cork layers. Biochemical defenses include inhibitors, phenolics, phytoalexins, pathogenesis-related proteins, and systemic acquired resistance mediated by salicylic acid. Overall, the document provides an overview of genetic and physiological factors that determine a plant's ability to resist pathogens.
The document discusses mycorrhizal symbioses, which is an association between plants and fungi where the fungi colonize plant roots. There are several types of mycorrhizae including ectomycorrhizae, arbuscular mycorrhizae, and ericoid mycorrhizae. The fungi form structures like hyphae and arbuscules to transfer nutrients from soil to plant roots, improving plant growth. Mycorrhizal associations are important globally and different types dominate in different climate zones and soil conditions. Proper management of mycorrhizae can benefit plant nutrition especially in low phosphorus soils.
Phenolic compounds play an important role in plant defense. They accumulate at infection sites and have antimicrobial properties. Their biosynthesis occurs through the shikimate pathway. Key enzymes like PAL and polyphenol oxidases are involved. Phenolics act as UV screens, signals, pigments, and help growth and defense. Phytoanticipins are preformed while phytoalexins are induced after infection. Case studies showed phenolics increased in response to pathogens and some like naringin and tangeretin had antifungal properties against Penicillium digitatum.
The document discusses the rhizosphere and phyllosphere, which are the regions of soil and plant surfaces influenced by microorganisms. The rhizosphere refers to the region of soil directly influenced by root secretions and microbes. It includes the inner and outer rhizosphere zones. Microbes in the rhizosphere play important roles in plant nutrition, growth promotion, and disease suppression. The phyllosphere refers to the interface between leaves and air, and is inhabited by bacteria, yeast and fungi that can benefit plants through nutrient management, disease control and stress tolerance.
This document discusses the role of STAT3 in skin disorders like psoriasis. It begins by providing background on the STAT family of proteins and how they function as signal transducers and transcription factors in response to extracellular ligands. It then focuses on STAT3 specifically, describing how it is activated by cytokines and other signaling molecules. The document discusses STAT3's role in keratinocyte migration and signaling pathways relevant to psoriasis pathogenesis. It notes that STAT3 links activated keratinocytes and immune cells required for psoriasis development.
Biosaftey issues related to gm crops and transgenic variety release Sachin Ekatpure
The document discusses issues related to biosafety and registration of transgenic agricultural organisms. It outlines three main biosafety concerns: environmental safety, food safety for human and animal health, and risk management. Some potential environmental risks discussed include effects on non-target organisms, development of insect resistance, gene flow, increased weediness, loss of biodiversity, changes in soil ecology, and genetic contamination. Food safety concerns include toxicity, allergenicity, and unintended effects. The document also describes India's biosafety regulatory framework and approval process for transgenic crops, which involves biosafety assessment and approval from multiple government committees and agencies before crops can be cultivated and marketed.
Plant growth promoting bacteria (PGPB) include rhizosphere and phyllosphere bacteria that benefit plants. PGPB in the rhizosphere, called plant growth promoting rhizobacteria (PGPR), were first described in the late 1970s. They are root-colonizing bacteria that fix nitrogen, produce phytohormones and siderophores, and inhibit pathogens through antibiosis and competition. PGPB diversity includes genera like Pseudomonas, Bacillus, Azospirillum, and Burkholderia. PGPB promote plant growth through various mechanisms and show potential for use in biocontrol, but face challenges in selection, characterization, field application, and commercialization due to natural variation and
Endophyte(by: elham lasemi PhD of nematology)Elham Lasemi
This document discusses endophytes and their potential use in sustainable agriculture. It defines endophytes as microorganisms that live inside plants without causing disease. Common endophytes include fungi, bacteria, and actinomycetes. Endophytes can have mutualistic relationships with plants, providing benefits like heat and drought tolerance, pathogen resistance, and production of valuable compounds. Molecular studies of endophytes can provide insights into their interactions with hosts and roles in nutrient cycling, bioremediation, and biocontrol. Their applications include improving plant growth, producing bioactive compounds, and reducing environmental waste.
The document discusses Plant Growth Promoting Rhizobacteria (PGPR), including their importance and role in agriculture. It defines PGPR, classifies them into two types, and describes their mechanisms of action such as nitrogen fixation, phosphate solubilization, siderophore production, and phytohormone production. The document outlines PGPR's role as phytostimulators, in abiotic stress tolerance, as biofertilizers, and biopesticides. It discusses the commercialization and future research of PGPR to potentially replace chemical fertilizers and pesticides.
This document discusses biofertilizers, which are living organisms that enrich soil nutrients. It covers various types of biofertilizers including bacterial (Rhizobium, Azotobacter, Azospirillum), cyanobacterial, mycorrhizal, phosphorus solubilizing, and siderophores biofertilizers. The document explains how these microorganisms work to fix nitrogen, solubilize phosphorus, decompose organic matter, and increase nutrient availability and crop yields. It also provides details on commercial biofertilizer production and lists important microorganism species and their applications in agriculture.
Improvement of Horticultural Crops for Abiotic Stress ToleranceEtalesh Goutam
This presentation was being presented by Etalesh Goutam (M.Sc. Horticulture; 2018-2020) in the master seminar at Department of Horticulture, H.N.B. Garhwal University, Srinagar (Garhwal) Uttarakhand- 246174
This document discusses induced systemic resistance (ISR) in plants. It provides historical context on studies of induced resistance dating back to the late 1800s. ISR is defined as a phenomenon where treatment with certain chemicals or pathogens activates a plant's defenses throughout the plant. Key findings include:
- ISR is activated by rhizobacteria and involves jasmonic acid and ethylene signaling rather than salicylic acid signaling as in systemic acquired resistance.
- Several bacteria, fungi, chemicals, and elicitors are reported to induce ISR through different signaling pathways and defense responses.
- Further research is needed to fully understand ISR signaling and apply it effectively in fields to control plant diseases.
Phytohormones are small molecules produced within plants that govern diverse physiological processes, including plant defense. Hormonal interactions collectively form hormone signaling networks, which mediate immunity as well as growth and abiotic stress responses.
Citrus canker is a bacterial disease that affects citrus plants. It is caused by the bacteria Xanthomonas citri. The disease causes small yellow lesions on leaves, twigs, fruits that enlarge and turn brown. Severe infections can reduce fruit quality and market value. The bacteria enters through wounds or stomata and spreads through rain splashing or insects. Control measures include removing infected plants, using disease-free nursery stock, antibiotic sprays, and resistant varieties.
PGPR can promote sustainable agriculture in 3 ways:
1. They fix atmospheric nitrogen into a form plants can use through nitrogen-fixing bacteria like Rhizobium.
2. They solubilize insoluble phosphorus and other nutrients like potassium through organic acid production, making them available to plants.
3. They produce plant hormones like auxins and cytokinins that stimulate plant growth and help plants withstand stresses.
Genetic engineering for biotic stress toleranceSachin Ekatpure
This document discusses genetic engineering approaches for improving biotic stress tolerance in plants. It focuses on engineering resistance to herbicides, insects, fungi and bacteria. For herbicide resistance, genes have been introduced that encode herbicide-insensitive versions of the EPSPS enzyme or enzymes that can degrade herbicides. For insect resistance, genes from Bacillus thuringiensis encoding cry toxins have been widely used, as well as genes encoding protease inhibitors, lectins, and chitinases. For resistance to fungi and bacteria, genes involved in the plant's incompatible hypersensitive response have potential for engineering resistance.
This document discusses phosphorus uptake by mycorrhizal fungi. It outlines two pathways for phosphorus uptake - the direct pathway where plants absorb phosphorus directly from the soil, and the mycorrhizal pathway where a symbiotic relationship with mycorrhizal fungi allows for greater phosphorus absorption. The mycorrhizal pathway involves mycorrhizal fungi extending their hyphae into the soil to absorb phosphorus, which is then transported to the plant. Mycorrhizal associations are significant as they improve plant nutrition and phosphorus solubility in soil.
This document discusses the potential benefits of genetically modified (GM) crops for long-term food and nutritional security. It notes that hundreds of millions of people worldwide suffer from malnutrition and hunger. GM crops could help address this by developing varieties that are drought resistant, salt tolerant, or more nutritious. Current GM crops include Bt cotton, golden rice, Bt brinjal, flavr savr tomato, Bt corn, and roundup ready crops. The document argues that with further development, GM technology could yield crops with improved yields, reduced pesticide use, enhanced nutrition, and other benefits to help ensure global food security.
Plant growth-promoting mechanisms of endophytesThe Tiny Domain
The global changes in climate and increasing population have unfortunate effects in food production and will become insufficient to feed the world. The green revolution could alleviate poor crop production by using high yielding varieties and use of chemical fertilizers and agrochemicals. But excessive use of chemical fertilizers and agrochemicals has resulted in the deterioration of soil fertility. Hence, agronomic practices are moving toward sustainable and environment friendly approach.
Diseases resistance and defence mechanismsRAMALINGAM K
This document summarizes plant resistance to pathogens and the mechanisms involved. It discusses two main types of resistance - horizontal (polygenic) and vertical (monogenic). It also describes various pre-existing and induced structural defenses plants employ, such as waxes, thickened cell walls, and formation of cork layers. Biochemical defenses include inhibitors, phenolics, phytoalexins, pathogenesis-related proteins, and systemic acquired resistance mediated by salicylic acid. Overall, the document provides an overview of genetic and physiological factors that determine a plant's ability to resist pathogens.
The document discusses mycorrhizal symbioses, which is an association between plants and fungi where the fungi colonize plant roots. There are several types of mycorrhizae including ectomycorrhizae, arbuscular mycorrhizae, and ericoid mycorrhizae. The fungi form structures like hyphae and arbuscules to transfer nutrients from soil to plant roots, improving plant growth. Mycorrhizal associations are important globally and different types dominate in different climate zones and soil conditions. Proper management of mycorrhizae can benefit plant nutrition especially in low phosphorus soils.
Phenolic compounds play an important role in plant defense. They accumulate at infection sites and have antimicrobial properties. Their biosynthesis occurs through the shikimate pathway. Key enzymes like PAL and polyphenol oxidases are involved. Phenolics act as UV screens, signals, pigments, and help growth and defense. Phytoanticipins are preformed while phytoalexins are induced after infection. Case studies showed phenolics increased in response to pathogens and some like naringin and tangeretin had antifungal properties against Penicillium digitatum.
The document discusses the rhizosphere and phyllosphere, which are the regions of soil and plant surfaces influenced by microorganisms. The rhizosphere refers to the region of soil directly influenced by root secretions and microbes. It includes the inner and outer rhizosphere zones. Microbes in the rhizosphere play important roles in plant nutrition, growth promotion, and disease suppression. The phyllosphere refers to the interface between leaves and air, and is inhabited by bacteria, yeast and fungi that can benefit plants through nutrient management, disease control and stress tolerance.
This document discusses the role of STAT3 in skin disorders like psoriasis. It begins by providing background on the STAT family of proteins and how they function as signal transducers and transcription factors in response to extracellular ligands. It then focuses on STAT3 specifically, describing how it is activated by cytokines and other signaling molecules. The document discusses STAT3's role in keratinocyte migration and signaling pathways relevant to psoriasis pathogenesis. It notes that STAT3 links activated keratinocytes and immune cells required for psoriasis development.
Here are the key biological and physiological mechanisms involved in genetically modified crops:
1. Gene insertion: The desired gene is isolated and inserted into the plant's genome using recombinant DNA technology. Common methods include Agrobacterium-mediated transformation or direct DNA delivery via particle bombardment.
2. Promoter selection: The inserted gene is regulated by selecting an appropriate promoter that controls the timing and location of gene expression. Constitutive promoters allow continuous expression in all tissues, while tissue-specific promoters restrict expression.
3. Protein expression: The inserted gene is transcribed and translated inside the plant cell, resulting in the production of a novel protein or trait. For example, Bt crops express insecticidal Cry proteins from Bacillus thuring
Effect of DX and Phosphorylation of Gal3-Binding Partner Interactions Draft 08Matthew Rotondi
This document summarizes research examining how covalent modification and phosphorylation of galectin-3 affects its binding to various protein partners. The researchers found that modification of galectin-3 by DX-52-1, a cell-permanent inhibitor, reduced binding to some proteins but not others. Phosphorylation of galectin-3 at two sites also reduced binding to all proteins tested. DX-52-1 further decreased binding of modified galectin-3 to two proteins. The results suggest galectin-3 interacts differently with binding partners and that modification and phosphorylation impact these interactions in partner-specific ways.
Epigenetics involves changes in gene expression that do not involve changes to the underlying DNA sequence. Examples of epigenetics include histone modifications and DNA methylation, which regulate gene expression through alterations to chromatin structure. Histone methylation involves the addition of methyl groups to histone tails by methyltransferases and regulates gene expression by promoting or blocking the binding of transcription factors. While histone methylation does not change charge or nucleosome interactions, it creates binding sites that regulate chromatin condensation and mobility to control gene expression.
The document summarizes the Signal Transducer and Activator of Transcription (STAT) protein family, with a focus on STAT3 and its role in psoriasis. It describes how STAT proteins are activated downstream of cytokine and growth factor receptors via phosphorylation by Janus kinases (JAKs). STAT3 in particular is activated by cytokines like IL-6 and plays roles in processes like acute phase response, cell growth, and embryonic development. Aberrant STAT3 activation has been implicated in conditions like psoriasis and cancer.
Gene expression is regulated through a variety of mechanisms that control which genes are expressed in a cell. These mechanisms include regulation of transcription, post-transcriptional modification, RNA transport and translation. Regulation allows cells to increase or decrease expression of genes as needed and is essential for cellular differentiation in multicellular organisms. Gene expression can be regulated at many stages including chromatin structure, transcription, RNA processing and protein modification.
a simple test for the cleavage activity of customized endonucleases in plantsStefanie Pencs
A transient expression assay was developed to test the cleavage activity of customized endonucleases like TALENs and RGENs in plants. The assay uses a compromised yfp reporter gene downstream of the endonuclease target site. Cleavage and repair at the target site can restore yfp expression. Co-bombardment with mCherry allows quantification of mutation frequency. The assay was tested in tobacco and barley, inducing yfp expression in 27-75% of cells. Stable mutations in gfp and the MLO gene were also induced. The assay provides a simple way to validate endonuclease activity before creating stable transgenic plants.
1) The study investigates the role of b-catenin in myogenesis using P19 cells with reduced b-catenin activity (P19[shb-cat] cells) compared to control cells.
2) The loss of b-catenin resulted in reduced expression of genes involved in premyogenic mesoderm formation and skeletal myogenesis.
3) While retinoic acid could partially compensate by upregulating some precursor genes in P19[shb-cat] cells, it could not compensate for the expression of genes required for terminal myogenesis or overall skeletal muscle formation.
Yeast 2 hybrid system ppt by meera qaiserQaiser Sethi
The yeast two-hybrid system is a technique used to study protein-protein interactions. It involves creating two fusion proteins, one with a DNA-binding domain and one with an activation domain. If the proteins of interest interact, they will reconstitute a functional transcription factor that activates a reporter gene. This allows researchers to identify novel interactions and characterize known interactions, helping to further understand biological processes at the molecular level.
DNA contains genetic information in the form of genes. Gene expression is regulated through positive and negative regulation, and this regulation is essential for organism growth and development. The lac operon in E. coli regulates the expression of genes involved in lactose metabolism. It consists of structural and regulatory genes. In the absence of lactose, a repressor protein binds to the operator gene and prevents transcription. In the presence of lactose, it binds to the repressor and induces a conformational change, allowing transcription and expression of the structural genes.
Senior Thesis-Analyzing the interactions between MYOGEF and a component of er...Dougan McGrath
This document summarizes a study analyzing the interaction between MYOGEF, a guanine nucleotide exchange factor that activates RhoA, and SPTA1, a major component of the erythrocyte cytoskeleton. Previous research identified SPTA1 as an interacting partner of MYOGEF. The current study aims to characterize this interaction through constructing cDNA fragments of different regions of MYOGEF and SPTA1 and examining their interaction using yeast two-hybrid and in vitro pull-down assays. The results showed that the C-terminal region of MYOGEF interacted with the EF-hand motifs located in the C-terminal region of SPTA1. This interaction may lead to MYOGEF-mediated
The researchers engineered a genetic toolset called pB-Tet-GOI for flexible control of transgene expression in stem and progenitor-derived cell lineages. The system incorporates the latest tetracycline transactivator and reverse transactivator variants to provide regulated transgene expression upon addition or removal of doxycycline. It allows for doxycycline-induced, doxycycline-suppressed, doxycycline-resistant (constitutive), and doxycycline-induced/constitutive regulation of transgenes. Initial tests showed the system provides inducible transgene expression with minimal leakiness and can be used to bidirectionally express reporters and genes of interest to direct cell differentiation.
The document summarizes the JAK-STAT signaling pathway. It discusses how the pathway consists of receptors, Janus kinases (JAKs), and Signal Transducers and Activators of Transcription (STATs). When a ligand binds to a receptor, it activates associated JAKs which phosphorylate STATs. Phosphorylated STATs form dimers and translocate to the nucleus to regulate gene transcription. The pathway is negatively regulated by phosphatases, suppressors of cytokine signaling, and protein inhibitors of activated STATs. Experiments using STAT knockout cells and mice have helped elucidate the specific roles and regulation of the pathway.
Direct Lineage Reprogramming: Novel Factors involved in Lineage ReprogrammingAhmed Madni
This document discusses novel factors involved in direct lineage reprogramming. It describes how epigenetic regulators, miRNAs, small molecules, and pluripotency factors can induce the conversion of one cell type into another without passing through a pluripotent state. Epigenetic regulators like chromatin modifiers and histone modifiers interact with lineage-specific transcription factors to activate master genes of the target cell type. miRNAs can also facilitate lineage conversion by downregulating non-specific gene expression. Small molecules provide advantages over genetic manipulation and can activate signaling pathways and transcription factors required for lineage specification. Indirect lineage reprogramming uses pluripotency factors to first generate an epigenetically unstable intermediate state that aids the conversion to various cell lineages
Epidermal growth factor and its receptor tyrosine kinaseGedion Yilma
The document discusses epidermal growth factor (EGF) signaling and the EGF receptor. It notes that EGF is involved in normal cell processes like development, differentiation, and wound healing. The EGF receptor belongs to the ErbB family of receptor tyrosine kinases and plays a key role in signaling pathways regulating cell proliferation, survival, and apoptosis. Overexpression or abnormal activation of the EGF receptor and other ErbB family members is implicated in many epithelial cancers.
Herstatin is an autoinhibitor of the epidermal growth factor receptor 2 (ErbB2/HER2) that blocks receptor interactions and signaling. This study investigated how herstatin expression affects early epidermal growth factor (EGF) and transforming growth factor beta (TGF-β) signaling pathways and the downstream effects on cell proliferation in mouse fibroblasts. The results showed that herstatin decreased EGF-induced EGFR phosphorylation and delayed receptor downregulation. It also blocked EGF and TGF-β stimulation of the Akt pathway but not the MAPK pathway. While MAPK was fully activated, herstatin prevented TGF-β-induced DNA synthesis and EGF-induced proliferation. These
This document summarizes a study investigating how herstatin, an autoinhibitor of the epidermal growth factor receptor 2 (ErbB2/HER2) tyrosine kinase, modulates epidermal growth factor (EGF) and transforming growth factor beta (TGF-β) signaling pathways. The study found that herstatin expression in NIH3T3 cells decreased EGF-induced EGFR tyrosine phosphorylation and delayed receptor down-regulation. Herstatin almost completely blocked Akt stimulation by EGF and TGF-β but did not affect mitogen-activated protein kinase (MAPK) activation. While MAPK was fully activated, herstatin prevented TGF-β-induced DNA synthesis and
Herstatin is an autoinhibitor of the epidermal growth factor receptor 2 (ErbB2/HER2) that blocks receptor interactions and signaling. This study investigated how herstatin expression affects early epidermal growth factor (EGF) and transforming growth factor beta (TGF-β) signaling pathways and the downstream effects on cell proliferation in mouse fibroblasts. The results showed that herstatin decreased EGF-induced EGFR phosphorylation and delayed receptor downregulation. It also blocked EGF and TGF-β stimulation of the Akt pathway but not the MAPK pathway. While MAPK was fully activated, herstatin prevented TGF-β-induced DNA synthesis and EGF-induced proliferation. These
Signal Transducer & Activator of Transcription (STAT)-3 plays an important role in psoriasis. STAT3 is activated in epidermal keratinocytes in human psoriatic lesions and links activated keratinocytes to immune cells required for the development of psoriasis. Transgenic mice with keratinocytes expressing a constitutively active form of STAT3 (K5.Stat3C mice) develop a skin phenotype resembling psoriasis when exposed to wounding. The development of psoriatic lesions in these mice requires cooperation between STAT3 activation in keratinocytes and activated T cells. Targeting STAT3 may be a potential therapeutic approach for treating psoriasis.
Similar to Synthetic microbial communities : Microbial consortia engineering (20)
Batteries -Introduction – Types of Batteries – discharging and charging of battery - characteristics of battery –battery rating- various tests on battery- – Primary battery: silver button cell- Secondary battery :Ni-Cd battery-modern battery: lithium ion battery-maintenance of batteries-choices of batteries for electric vehicle applications.
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Null Bangalore | Pentesters Approach to AWS IAMDivyanshu
#Abstract:
- Learn more about the real-world methods for auditing AWS IAM (Identity and Access Management) as a pentester. So let us proceed with a brief discussion of IAM as well as some typical misconfigurations and their potential exploits in order to reinforce the understanding of IAM security best practices.
- Gain actionable insights into AWS IAM policies and roles, using hands on approach.
#Prerequisites:
- Basic understanding of AWS services and architecture
- Familiarity with cloud security concepts
- Experience using the AWS Management Console or AWS CLI.
- For hands on lab create account on [killercoda.com](https://killercoda.com/cloudsecurity-scenario/)
# Scenario Covered:
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- Objective: Demonstrate how a PassRole misconfiguration can grant unauthorized access.
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- Allow user to pass IAM role to EC2.
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Try at [killercoda.com](https://killercoda.com/cloudsecurity-scenario/)
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› ...
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3. Why synthetic Microbial communities ?
● Inability of organisms to be cultured in the laboratory, e.g. an estimated 103
–105
microbial species in
1 g of soil, less than 1% can be cultured using existing methodologies. Lett Appl Microbiol. 2008;47:
361–366.
● Limited number of exogenous elements that can be cloned and optimized in a single cell, lack of
compartmentalization. Current Opinion in Biotechnology 2012, 23:798–802
● Communities of microbes can better handle the complex process of the conversion of substrates to
products by dividing the metabolic load among multiple species. In addition, communities of
microbes exhibit increased production rates, metabolic efficiency, and robustness to changes in
environmental conditions relative to mono-cultures due to synergistic interactions between species.
Shou et al., Proc Natl Acad Sci USA, 104: 1877–1882 (2007), Team MIT iGem 2015
4. Includes,
92 named bacterial phyla, 26 archaeal phyla,
five of the Eukaryotic supergroups
and 1000+ uncultured organisms.
Nature Microbiology Article number: 16048 (2016)
6. Metagenomics :
● Metagenomics is based on the genomic analysis of microbial DNA that is extracted directly from
communities in environmental samples, also known as community genomics.
● Metagenomics has emerged as a powerful tool that can be used to analyze microbial communities
regardless of the ability of member organisms to be cultured in the laboratory
7. Current limitations of using microbial consortia :
● It requires simultaneous control of both the individual microbes and the ecosystem as a whole.
● Engineering individual microbes often leads to a change in their relative fitness and results in a
change in community composition that can be detrimental to the overall process
9. Some applications :
● Regot S, Macia J, Conde N, Furukawa K, Kjellen J, Peeters T, Hohmann S, de Nadal E, Posas F,
Sole´ R: Distributed biological computation with multicellular engineered networks. Nature
2011, 469:207-211
Yeast consortia were engineered to perform complex Boolean logic functions by compartmentalizing
simple logic functions in individual strains and connecting them via cell–cell communication.
● Hu B, Du J, Zou R-y, Yuan Y-j: An environment-sensitive synthetic microbial ecosystem. PLoS
One 2010, 5:e10619
This work describes a synthetic microbial community where environmental conditions can be tuned to
promote a range of ecosystem behaviors.
10. ● Ma Q, Zhou J, Zhang W, Meng X, Sun J, Yuan Y-j: Integrated proteomic and metabolomic
analysis of an artificial microbial community for two-step production of vitamin C. PLoS One
2011, 6:e26108.
Combined proteomic and metabolic profiles of an artificial microbial community were used to elucidate
intercellular interactions to optimize growth conditions
● Balagadde, F.K. et al. (2008) A synthetic Escherichia coli predator-prey ecosystem. Mol. Sys.
Biol. 4, e187
Increasing the circuit induction level, activates the predator– prey dynamics and induces population
oscillations, which allows the two populations to co-exist despite their competition for nutrients. In other
words, establishing predation dynamics enables greater biodiversity during long term culturing.
Trends in Biotechnology Vol.26 No.9 Current Opinion in Biotechnology 2012, 23:798–802
12. Distributed biological computation with multicellular engineered
networks
● Study used an alpha-factor ( Alpha Factor Mating Pheromone induces the expression of mating
genes, changes in nuclear architecture, and polarizes growth toward the mating partner.) -based
system in the construction of a community capable of computing complex Boolean logic functions.
● Library of 16 yeast cell modules that respond to an extracellular stimulus and/or alpha-factor and
produce GFP as a reporter or alpha-factor to propagate the signal to the next population was
constructed. The modules were successfully combined to produce 2-input and 3-input logic
functions.
Nature 2011, 469:207-211
13.
14. Full description of each cell used in the biological circuits :
Cell#1 is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression and
STE3 deletion to prevent mating with MATa cells within the circuit. It also contain MFα1 gene under the control of the STL1
osmo-responsive promoter in the episomal plasmid pRS424STL1-MFα1 to express α-factor in the presence of NaCl.
YCplac195-fps1Δ1 plasmid encodes a constitutively open version of the Fps1 glycerol channel. fps1Δ1 mutation is used to
increase sensitivity to high osmo-stress, and thus induce higher α-factor expression. This cell implements an IDENTITY
function.
Cell#2 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
activation of the mating pathway unless fus3as is expressed. GFP was introduced in the FUS1 gene locus under its promoter.
GALS::fus3as construct was integrated to regulate fus3as expression in galactose/glucose growing conditions. GALS version
of GAL promoter was used to prevent leakiness in glucose. ADGEV construct encoding the hybrid transcription factor “GEV”
(Gal4DBD-hER-VP16 fusion protein) under the control of the ADH1 promoter was also integrated to regulate GAL genes with
17β-estradiol. This cell implements an AND function with 17β-estradiol and an N-IMPLIES function with glucose as input in
galactose based circuits.
Cell3# is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression and
STE3 deletion to prevent mating with MATa cells within the circuit. It contains MFα1 gene under the control of two
TetOperators in the centromeric plasmid pCM183-MFα1 that also express the Tet Transactivator. This allows cells to repress
α-factor expression in the presence of doxycycline. This cell implements a NOT function.
15. Cell#4 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
activation of the mating pathway unless fus3as is expressed. GFP was introduced in FUS1 gene locus under its promoter.
fus3as construct with its own promoter was integrated to regulate fus3as activity with 6a inhibitor. This cell implements an
N-IMPLIES function.
Cell#5 is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression and
STE3 deletion to prevent mating with MATa cells within the circuit. MFα1 gene is under the control of the GAL1 promoter in
the episomal plasmid pBEVY-GU-MFα1 to express α-factor in galactose. This cell implements an IDENTITY function upon
galactose addition or a NOT function in glucose in galactose based circuits.
Cell#6 (reporter cell) is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity. GFP was introduced in
FUS1 gene locus under its promoter. This cell implements an IDENTITY function.
Cell#7 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
activation of the mating pathway unless fus3as is expressed. GFP was introduced in FUS1 gene locus under its promoter.
fus3as gene under the control of 7 TetOperators in the episomal plasmid pRS413TetO7-fus3as that also express the
reverse Tet Transactivator was introduced to regulate fus3as expression in doxycycline. STE2 deletion is to prevent S.
cerevisiae α- factor signaling. CaSTE2 was expressed from the pAJ1CaSTE2 plasmid to make cells competent for C.
albicans α-factor signaling. This cell implements an AND function with doxycycline but with C. albicans α-factor as a wire.
Cell8# is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression.
STE3 deletion to prevent mating with MATa cells within the circuit. MFα1 gene is under the control of the glucose
responsive promoter HXT1 in the episomal plasmid YEpHXT1-MFα1. This cell implements an IDENTITY function
16. Cell#9 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
constitutive signaling ability. GFP was introduced in FUS1 gene locus under its promoter. fus3as gene under the control of
seven TetOperators in the integrative plasmid YIpTetO7-fus3as that also express the reverse Tet Transactivator was
introduced to regulate fus3as expression in doxycycline. This cell implements an AND function.
Cell10# is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression.
STE3 deletion is to prevent mating with MATa cells within the circuit. MFα1 gene under the control of 2 TetOperators in the
centromeric plasmid YCpTetO2-MFα1 that also express the reverse Tet Transactivator was introduced to regulate α-factor
expression in doxycycline. This cell implements an IDENTITY function.
Cell#11 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
activation of the mating pathway unless fus3as is expressed. GFP was introduced in FUS1 gene locus under its promoter.
fus3as gene under the control of 7 TetOperators in the integrative plasmid YIpTetOff7-fus3as that also express the Tet
Transactivator was introduced to repress fus3as expression in doxycycline. This cell implements an N-IMPLIES function.
Cell#12 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
activation of the mating pathway unless fus3as is expressed. GFP was introduced in FUS1 gene locus under its promoter.
GALS::fus3as construct was integrated and ADGEV construct encoding the hybrid transcription factor “GEV” (Gal4DBD-
hER-VP16 fusion protein) under the control of the ADH1 promoter was also integrated to regulate GAL genes with 17β-
estradiol. GAL4 was deleted to prevent activation of GAL genes in galactose. This cell implements an AND function.
17. Cell#13 is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression.
STE3 deletion is to prevent mating with MATa cells within the circuit. CaMFα1 gene is under the control of 7 TetOperators
in the episomal plasmid YEpTetOff7-CaMFα1 that also express the Tet Transactivator. CaMFα1 gene contains the S.
cerevisiae MFα1 signal peptide for secretion and proteolysis followed by just one copy of C. albicans MFα1 peptide
sequence. This allows cells to repress C albicans α-factor expression in presence of doxycycline. This cell implements a
NOT function.
Cell#14 is a MATα cell that contains MFα1 and MFα2 deletions to avoid expression of endogenous α-factor expression and
STE3 deletion to prevent mating with MATa cells within the circuit. CaMFα1 gene under the control of 7 TetOperators in the
centromeric plasmid YCpTetO7-CaMFα1 that also express the reverse Tet Transactivator was introduced to regulate α-
factor expression in doxycycline. CaMFα1 gene contains the S. cerevisiae MFα1 signal peptide for secretion and
proteolysis followed by just one copy of C. albicans MFα1 peptide sequence. This cell implements an IDENTITY function.
Cell#15 is a MATa cell that contains BAR1 and SST2 deletions to increase α-factor sensitivity and FUS3 and KSS1
deletions to prevent activation of the mating pathway unless fus3 is expressed. GFP was introduced in FUS1 gene locus
under its promoter. GALS::fus3 construct was integrated to regulate fus3 expression in galactose/glucose growing
conditions. GALS version of GAL promoter was used to prevent leakiness in glucose. STE2 deletion is to prevent S
Cerevisiae α-factor signaling. CaSTE2 is expressed in the YIpCaSTE2 plasmid to make cell competent for C albicans α-
factor signaling. This cell implements an AND function.
Cell#16 is a MATa cell that contains BAR1 deletion to increase α-factor sensitivity and FUS3 and KSS1 deletions to prevent
activation of the mating pathway unless fus3as is expressed. FUS1::mCherry was integrated for different output production.
fus3as gene under the control of 7 TetOperators in the integrative plasmid YIpTetO7-fus3as that also express the reverse
Tet Transactivator was introduced to regulate fus3as expression in doxycycline. This cell implements an AND function.
18. Quantification of single cell computational output. Truth table and schematic representation of a cell with a NOT logic . The
NOT function is implemented in Cell 3, and the reporter cell (Cell 6) is used to quantify alpha factor production in vivo.
Doxycycline (DOX) was added as indicated and cells were analysed by FACS. Data are expressed as the percentage of
GFP-positive cells versus cells treated with pheromone. Results represent the mean 6 s.d. of three independent experiments.
19. Transfer functions of basic logic cells. Schematic representation of cells implementing N-IMPLIES, AND, IDENTITY and
NOT functions. Indicated cells were treated with indicated input concentrations (2 inputs, left; 1 input, right). 17bE2,
oestradiol; GLU, glucose.
20. Truth table and schematic representation of cells in the AND circuit. Cells were mixed proportionally and inputs
(NaCl and oestradiol) were added at the same time
21. Panel ordered as in (a) following NOR logic. Indicated cells were treated using as inputs doxycycline and 6a
22. OR gate. Indicated cells were treated using as inputs 0.4M NaCl and 2% galactose (GAL).
23. NAND gate. Indicated strains were treated using as inputs doxycycline and 2% glucose. Data represent the mean
and standard deviation of three independent experiments.
24. Design and in vivo implementation of a multiplexer (MUX2to1) : Truth table and schematic representation of the cells
used in the MUX2to1. Indicated cells were treated using doxycycline (selector) and the inputs oestradiol and/or 2%
galactose. Data are expressed as the percentage of GFP-positive cells using a sample treated with either S. cerevisiae or
C. albicans alpha factor as a reference for Cell 12 or Cell 15, respectively.
25. Design and in vivo implementation of a 1-bit adder with carry :Truth table and schematic representation of cells used
for 1-bit adder with carry. Four cells with two wiring systems that respond to glucose and doxycycline with an XOR logic
were combined with an extra cell that respond to same stimuli but with an AND logic in which instead of GFP, mCherry was
expressed as output. The final outcome was measured as in Fig. 3a. Green bars indicate the adder output (GFP) whereas
red bars represent the carry bit (mCherry). GFP and mCherry images of cells are shown (right panels). Data represent the
mean and standard deviation of three independent experiments.
26. Thank You.
Brainbow :
Brainbow is the process by which individual neurons in the brain can be distinguished from neighboring neurons
using fluorescent proteins. By randomly expressing different ratios of red, green, and blue derivatives of green
fluorescent protein in individual neurons, it is possible to flag each neuron with a distinctive color. This process has
been a major contribution to the field of connectomics, or the study of neural connections in the brain.