The technique was developed by E.M. Southern in 1975.
The Southern blot is used to detect the presence of a particular piece of DNA in a sample
mujahid hussain, Department of Botany, University of Sargodha, Sargodha, Punjab, Pakistan
Southern blotting is a hybridization technique for identification of particular size of DNA from the mixture of other similar molecules. This technique is based on the principle of separation of DNA fragments by gel electrophoresis and identified by labelled probe hybridization.
Southern blotting is a hybridization technique for identification of particular size of DNA from the mixture of other similar molecules. This technique is based on the principle of separation of DNA fragments by gel electrophoresis and identified by labelled probe hybridization.
Topics included - Introduction; explanation; examples like blue white screening method, antibiotic resistance; Extra information regarding - detection of oncogene in vertebrates and role of sleeping beauty; Merits and demerits of insertional inactivation.
Topics included - Introduction; explanation; examples like blue white screening method, antibiotic resistance; Extra information regarding - detection of oncogene in vertebrates and role of sleeping beauty; Merits and demerits of insertional inactivation.
Blotting techniques involve the separation (via electrophoresis) and transfer of DNA, RNA, or proteins onto a blotting membrane. This separation is generally followed by complexing of the target with a labeled molecule for detection.
Used extensively in analysis of:
DNA.
RNA.
Proteins.
Blotting
A blot, in molecular biology and genetics, is a method of transferring proteins, DNA or RNA, onto a carrier.
The term "blotting" refers to the transfer of biological samples from a gel to a membrane and their subsequent detection on the surface of the membrane.
Types of blotting techniques
Southern Blotting
Northern Blotting
Western Blotting
A Southern blot is a method used
in molecular biology for detection of a specific DNA sequence in DNA samples.
Southern blotting combines transfer of electrophoresis -separated DNA fragments to a filter membrane and subsequent fragment detection by probe hybridization.
The method is named after its inventor, the British biologist Edwin Mellor Southern.
- Methods in Southern blotting
- Advantages and disadvantages
Instrumental and intrinsic values of biodiversitymujahid hussain
Instrumental and intrinsic values of biodiversity
Uploaded by Mujahid Hussain, Department of Botany, University of Sargodha, Sargodha, Punjab, Pakistan.
mujahid.hussain7877@gmail.com
chromosomal aberrations
Variation in chromosomal structure or number
changes in the number of sets of chromosomes (ploidy), changes in the number of individual chromosomes (somy), or changes in appearance of individual chromosomes through mutation-induced rearrangements. They can be associated with genetic diseases or with species differences
Mujahid Hussain, Department of Botany, University of Sargodha, Sargodha, Punjab, Pakistan
Comparison between Replication of Prokaryotes and Eukaryotes mujahid hussain
Comparison between Replication of Prokaryotes and Eukaryotes
Mujahid Hussain
(M.Phil Botany)
Department of Botany
University of Sargodha, Sargodha ,Punjab, Pakistan
COMPARATIVE ANALYSIS OF ASCORBIC ACID CONCENTRATION IN TWO VARIETIES OF CITRU...mujahid hussain
COMPARATIVE ANALYSIS OF ASCORBIC ACID CONCENTRATION IN TWO VARIETIES OF CITRUS (CITRUS SINENSIS, CITRUS LIMETTA) COLLECTED FROM DIFFERENT TEHSILS OF DISTRICT SARGODHA
Spatial variation in Morphological, physiological, biochemical and elemental attributes of Citrus sinensis (Musambi) collected from different tehsils of District Sargodha
one day seminar on biodiversity and conservation and awareness walk mujahid hussain
one day seminar on biodiversity and conservation and awareness walk organized by department of botany, university of Sargodha, Sargodha, Punjab, Pakistan
At MBA hall University of Sargodha
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Impact of Ethnobotany in traditional medicine,
New development in herbals,
Bio-prospecting tools for drug discovery,
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Reverse Pharmacology.
The French Revolution, which began in 1789, was a period of radical social and political upheaval in France. It marked the decline of absolute monarchies, the rise of secular and democratic republics, and the eventual rise of Napoleon Bonaparte. This revolutionary period is crucial in understanding the transition from feudalism to modernity in Europe.
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Andreas Schleicher presents at the OECD webinar ‘Digital devices in schools: detrimental distraction or secret to success?’ on 27 May 2024. The presentation was based on findings from PISA 2022 results and the webinar helped launch the PISA in Focus ‘Managing screen time: How to protect and equip students against distraction’ https://www.oecd-ilibrary.org/education/managing-screen-time_7c225af4-en and the OECD Education Policy Perspective ‘Students, digital devices and success’ can be found here - https://oe.cd/il/5yV
We all have good and bad thoughts from time to time and situation to situation. We are bombarded daily with spiraling thoughts(both negative and positive) creating all-consuming feel , making us difficult to manage with associated suffering. Good thoughts are like our Mob Signal (Positive thought) amidst noise(negative thought) in the atmosphere. Negative thoughts like noise outweigh positive thoughts. These thoughts often create unwanted confusion, trouble, stress and frustration in our mind as well as chaos in our physical world. Negative thoughts are also known as “distorted thinking”.
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2. Southern blotting
• The technique was developed by E.M. Southern
in 1975.
• The Southern blot is used to detect the presence
of a particular piece of DNA in a sample.
• The DNA detected can be a single gene, or it
can be part of a larger piece of DNA such as a
viral genome.
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3. Steps
• Extract and purify DNA from the cell
• DNA is restricted with enzyme
• Separated by gel electrophoresis
• Denatured the DNA
• transfer to the Nitrocellulose membrane paper
(Blotting)
• Add radio labelled probe for hybridization to take
place
• Wash off unbound probe
• Autoradiograph
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4. Isolation of DNA
• Isolate the DNA from the rest of the cellular
material in the nucleus.
• Incubate specimen with detergent to promote cell
lysis.
• A buffer containing a detergent such as sodium
dodecyl sulfate (SDS) is usually sufficient to
disrupt the cell membranes and release high-
molecular weight DNA.
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5. Isolation of DNA
• Lysis frees cellular proteins and DNA.
• Proteins are enzymatically degraded by incubation
with proteinase.
• Digestion of RNA with ribonuclease.
• A final treatment with ethanol, which precipitates the
remaining nucleic acid polymers, enabling
ribonucleotides and other low-molecular weight
contaminants to be removed.
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6. Restriction Digestion
• Cut the DNA into different sized pieces.
• Use restriction endonucleases (RE)
• Example, Eco R1
• For genomic DNA, overnight digestion is usually
required.
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7. Gel electrophoresis
• Nucleic acid have a net negatively charge and will
move from left to right.
• The larger molecule are hold up while the smaller
ones moves faster.
• This results in separation by size.
• Agarose gels have microscopic pores
• Gel is soaked in a buffer which controls the size of
pores.
• Gel can be stained with ethidium bromide.
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8. Gel electrophoresis
• EtBr causes the DNA to fluoresce under UV light.
• This will help to know the exact migration of DNA.
Denaturation and blotting .
• DNA is then denature with an alkaline solution e.g. NaOH.
• This causes the double stranded of DNA to single stranded.
• The process of transferring the DNA from the gel to membrane is called as blotting.
• The blot is done on the sheet of nitrocellulose membrane or nylon.
• DNA is neutralize with NaCl to prevent re-hybridization before adding the probe.
• Transfer is by capillary blotting.
• The blot is made permanent either by
• 1) Drying at 80~ C
• 2)Exposing to UV irradiation.
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10. Hybridization
• It is a process of forming a double stranded DNA
molecule between a single stranded DNA probe and a
single stranded target DNA.
• The labelled probe is add to the membrane in a buffer
and incubated for several hours to allow the probe
molecule to find their targets.
• Probe
• Small piece of labelled DNA used to find another
piece of DNA.
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11. Wash and autoradiography
• Wash excess probe that are bound non-specifically
with the membrane.
• Blot is incubate with wash buffer containing NaCl
and detergent to wash away excess probe.
• Radioactive probes enable autoradiography
detection.
• The probe is radioactive, the particle it emits will
expose X-ray film.
• After development, there will the dark spots on the
film where the probe bound.
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13. Advantages
• Examine entire genome
• Easier
• Detect multiple product
• Disadvantages
• Costly
• Greater quantity of DNA required
• Labor intensive
• Time consuming
• This technique requires fresh or frozen specimens
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14. Application
• To identify specific DNA in the sample
• To isolate desired DNA for making of rDNA
• Used to prognosis cancer and in prenatal diagnosis of
genetic disease
• Used in phylogenetic analysis
• Diagnosis of HIV-I and infectious disease
• And application DNA finger printing
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