MicroRNAs (miRNAs) are small non-coding RNA molecules involved in post-transcriptional gene silencing. They are 21-24 nucleotides long and regulate gene expression by binding to target mRNAs. The first miRNA, lin-4, was discovered in C. elegans in 1993. Currently over 24,000 miRNAs have been discovered across species. MiRNAs are important regulators of gene expression under stress conditions in plants. For example, miR399 is strongly induced during phosphate starvation and targets the PHO2 gene for downregulation.
TaqMan® MicroRNA Assays quantitate miRNAs with the specificity and sensitivity of TaqMan® Assay chemistry. A simple, two-step protocol requires only reverse transcription with a miRNA-specific primer, followed by real-time PCR with TaqMan® probes.
For more information visit:
http://www.invitrogen.com/site/us/en/home/Products-and-Services/Applications/epigenetics-noncoding-rna-research/miRNA-Profiling-/miRNA_qRT_PCR/TaqMan-MicroRNA-Assays-and-Arrays.html?CID=TaqmanMicroRNA-SS-12312
TaqMan® MicroRNA Assays quantitate miRNAs with the specificity and sensitivity of TaqMan® Assay chemistry. A simple, two-step protocol requires only reverse transcription with a miRNA-specific primer, followed by real-time PCR with TaqMan® probes.
For more information visit:
http://www.invitrogen.com/site/us/en/home/Products-and-Services/Applications/epigenetics-noncoding-rna-research/miRNA-Profiling-/miRNA_qRT_PCR/TaqMan-MicroRNA-Assays-and-Arrays.html?CID=TaqmanMicroRNA-SS-12312
DNA and RNA Structure
Central Dogma of Life
Protein Engineering (Brief)
Introduction to microRNA (miRNA)
History of miRNA
Biogenesis of miRNA
Conservation of miRNA
Impact of miRNA
miRNA Therapy
Conclusion
microRNA for Clinical Research and Tumor AnalysisBioGenex
The discovery of microRNAs [miRNAs] has been one of the defining developments in cancer biology over the past decade. miRNAs are short, single stranded 20-22 nucleotide long, non-coding RNAs that regulate gene expression and have fundamental roles in Cancer growth and metastasis. miRNAs exert their function via base pairing with complementary mRNA molecules, resulting in gene silencing via transcriptional repression or target degradation. BioGenex solved the inherent difficulties in visualizing miRNAs in spatial context by using a propriety technology to synthesize modified, high-affinity oligonucleotides, labelling miRNA probes with multiple reporter molecules and developing a fully-integrated miRNA-ISH workflow solution allowing high throughput analysis of miRNA in the spatial context.
microRNA in Plant Defence and Pathogen Counter-defenceMahtab Rashid
The presentation is about the role of microRNA in plant defence and the pathogen counter-defences which they adopt to escape or evade the plant defence mechanism.
Mirna biogenesis, mechanism of action, isolation protocol, and quantification...SAIMA BARKI
The concise SlideShare presentation on the miRNA biogenesis, nomenclature, specific isolation protocols, the use of novel primers for preamplification purpose, and the comparison of different methods, qPCR based quantification along the guidance of the choice of sample and a novel technique for the different clinical samples.
DNA and RNA Structure
Central Dogma of Life
Protein Engineering (Brief)
Introduction to microRNA (miRNA)
History of miRNA
Biogenesis of miRNA
Conservation of miRNA
Impact of miRNA
miRNA Therapy
Conclusion
microRNA for Clinical Research and Tumor AnalysisBioGenex
The discovery of microRNAs [miRNAs] has been one of the defining developments in cancer biology over the past decade. miRNAs are short, single stranded 20-22 nucleotide long, non-coding RNAs that regulate gene expression and have fundamental roles in Cancer growth and metastasis. miRNAs exert their function via base pairing with complementary mRNA molecules, resulting in gene silencing via transcriptional repression or target degradation. BioGenex solved the inherent difficulties in visualizing miRNAs in spatial context by using a propriety technology to synthesize modified, high-affinity oligonucleotides, labelling miRNA probes with multiple reporter molecules and developing a fully-integrated miRNA-ISH workflow solution allowing high throughput analysis of miRNA in the spatial context.
microRNA in Plant Defence and Pathogen Counter-defenceMahtab Rashid
The presentation is about the role of microRNA in plant defence and the pathogen counter-defences which they adopt to escape or evade the plant defence mechanism.
Mirna biogenesis, mechanism of action, isolation protocol, and quantification...SAIMA BARKI
The concise SlideShare presentation on the miRNA biogenesis, nomenclature, specific isolation protocols, the use of novel primers for preamplification purpose, and the comparison of different methods, qPCR based quantification along the guidance of the choice of sample and a novel technique for the different clinical samples.
Bladder Cancer Diagnostic-Initial Team ProjectSagar Desai
A mini-project to find biomarkers for bladder cancer diagnosis. We narrowed down our list of viable candidates down to three that could be used in combination to provide sensitivity and specificity values greater than 94%. Furthermore, we calculated long-term monitoring and payor costs as well as potential profit.
Cellular signal transduction pathways under abiotic stressSenthil Natesan
Abiotic stresses, especially cold, salinity and drought, are the primary causes of crop loss worldwide. Plant adaptation to environmental stresses is dependent upon the activation of cascades of molecular networks involved in stress perception, signal transduction, and the expression of specific stress-related genes and metabolites. Plants have stress-specific adaptive responses as well as responses which protect the plants from more than one environmental stress. There are multiple stress perception and signaling pathways, some of which are specific, but others may cross-talk at various steps (Knight & knight ,2001).Many cold induced pathways are activated to protect plants from deleterious effects of cold stress, but till date, most studied pathway is ICE-CBF-COR signaling pathway (Miura and Furumoto,2013 ) . The Salt-Overly-Sensitive (SOS) pathway, identified through isolation and study of the sos1, sos2, and sos3 mutants, is essential for maintaining favorable ion ratios in the cytoplasm and for tolerance of salt stress (shi .et al ,2002). Both ABA-dependent and -independent signaling pathways appear to be involved in osmotic stress tolerance (Nakashima and shinozaki, 2013) .ROS play a dual role in the response of plants to abiotic stresses functioning as toxic by-products of stress metabolism, as well as important signal transduction molecules and the ROS signaling networks can control growth, development, and stress response ( Mahajan,s and Tuteja, 2005) .
The IOSR Journal of Pharmacy (IOSRPHR) is an open access online & offline peer reviewed international journal, which publishes innovative research papers, reviews, mini-reviews, short communications and notes dealing with Pharmaceutical Sciences( Pharmaceutical Technology, Pharmaceutics, Biopharmaceutics, Pharmacokinetics, Pharmaceutical/Medicinal Chemistry, Computational Chemistry and Molecular Drug Design, Pharmacognosy & Phytochemistry, Pharmacology, Pharmaceutical Analysis, Pharmacy Practice, Clinical and Hospital Pharmacy, Cell Biology, Genomics and Proteomics, Pharmacogenomics, Bioinformatics and Biotechnology of Pharmaceutical Interest........more details on Aim & Scope).
microRNA/miRNA,Biochemistry-definition,who discovered it and how,types of miRNA,functions of microRNA,processing in nucleus and cytoplasm,applications,RISC
MicroRNAs, in common, play the similar roles as transcription factors by specifically binding the seed sequence within 3’UTR of target genes, by activating their degradation or inhibiting their translation of the target genes mRNAs or inhibit their translation, which result in variety of cell activities changing at different levels.
https://www.creative-biogene.com/Product/miRNA-Clones.html
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Analytical Study of Hexapod miRNAs using Phylogenetic Methodscscpconf
MicroRNAs (miRNAs) are a class of non-coding RNAs that regulate gene expression.
Identification of total number of miRNAs even in completely sequenced organisms is still an
open problem. However, researchers have been using techniques that can predict limited
number of miRNA in an organism. In this paper, we have used homology based approach for
comparative analysis of miRNA of hexapoda group .We have used Apis mellifera, Bombyx
mori, Anopholes gambiae and Drosophila melanogaster miRNA datasets from miRBase
repository. We have done pair wise as well as multiple alignments for the available miRNAs in
the repository to identify and analyse conserved regions among related species. Unfortunately,
to the best of our knowledge, miRNA related literature does not provide in depth analysis of
hexapods. We have made an attempt to derive the commonality among the miRNAs and to
identify the conserved regions which are still not available in miRNA repositories. The results
are good approximation with a small number of mismatches. However, they are encouraging and may facilitate miRNA biogenesis for hexapods.
2024.06.01 Introducing a competency framework for languag learning materials ...Sandy Millin
http://sandymillin.wordpress.com/iateflwebinar2024
Published classroom materials form the basis of syllabuses, drive teacher professional development, and have a potentially huge influence on learners, teachers and education systems. All teachers also create their own materials, whether a few sentences on a blackboard, a highly-structured fully-realised online course, or anything in between. Despite this, the knowledge and skills needed to create effective language learning materials are rarely part of teacher training, and are mostly learnt by trial and error.
Knowledge and skills frameworks, generally called competency frameworks, for ELT teachers, trainers and managers have existed for a few years now. However, until I created one for my MA dissertation, there wasn’t one drawing together what we need to know and do to be able to effectively produce language learning materials.
This webinar will introduce you to my framework, highlighting the key competencies I identified from my research. It will also show how anybody involved in language teaching (any language, not just English!), teacher training, managing schools or developing language learning materials can benefit from using the framework.
Operation “Blue Star” is the only event in the history of Independent India where the state went into war with its own people. Even after about 40 years it is not clear if it was culmination of states anger over people of the region, a political game of power or start of dictatorial chapter in the democratic setup.
The people of Punjab felt alienated from main stream due to denial of their just demands during a long democratic struggle since independence. As it happen all over the word, it led to militant struggle with great loss of lives of military, police and civilian personnel. Killing of Indira Gandhi and massacre of innocent Sikhs in Delhi and other India cities was also associated with this movement.
Introduction to AI for Nonprofits with Tapp NetworkTechSoup
Dive into the world of AI! Experts Jon Hill and Tareq Monaur will guide you through AI's role in enhancing nonprofit websites and basic marketing strategies, making it easy to understand and apply.
Biological screening of herbal drugs: Introduction and Need for
Phyto-Pharmacological Screening, New Strategies for evaluating
Natural Products, In vitro evaluation techniques for Antioxidants, Antimicrobial and Anticancer drugs. In vivo evaluation techniques
for Anti-inflammatory, Antiulcer, Anticancer, Wound healing, Antidiabetic, Hepatoprotective, Cardio protective, Diuretics and
Antifertility, Toxicity studies as per OECD guidelines
Macroeconomics- Movie Location
This will be used as part of your Personal Professional Portfolio once graded.
Objective:
Prepare a presentation or a paper using research, basic comparative analysis, data organization and application of economic information. You will make an informed assessment of an economic climate outside of the United States to accomplish an entertainment industry objective.
Francesca Gottschalk - How can education support child empowerment.pptxEduSkills OECD
Francesca Gottschalk from the OECD’s Centre for Educational Research and Innovation presents at the Ask an Expert Webinar: How can education support child empowerment?
Read| The latest issue of The Challenger is here! We are thrilled to announce that our school paper has qualified for the NATIONAL SCHOOLS PRESS CONFERENCE (NSPC) 2024. Thank you for your unwavering support and trust. Dive into the stories that made us stand out!
Palestine last event orientationfvgnh .pptxRaedMohamed3
An EFL lesson about the current events in Palestine. It is intended to be for intermediate students who wish to increase their listening skills through a short lesson in power point.
Synthetic Fiber Construction in lab .pptxPavel ( NSTU)
Synthetic fiber production is a fascinating and complex field that blends chemistry, engineering, and environmental science. By understanding these aspects, students can gain a comprehensive view of synthetic fiber production, its impact on society and the environment, and the potential for future innovations. Synthetic fibers play a crucial role in modern society, impacting various aspects of daily life, industry, and the environment. ynthetic fibers are integral to modern life, offering a range of benefits from cost-effectiveness and versatility to innovative applications and performance characteristics. While they pose environmental challenges, ongoing research and development aim to create more sustainable and eco-friendly alternatives. Understanding the importance of synthetic fibers helps in appreciating their role in the economy, industry, and daily life, while also emphasizing the need for sustainable practices and innovation.
1. Presented By:
Kunj Bihari Gupta
M.Phil-Ph.D (1st sem)
Center for Biosciences
School of Basic and Applied Sciences
Central University of Punjab
2. What are MicroRNAs (miRs)? –
MicroRNAs are a class of 21-24 nucleotides long,
single stranded, endogenous, non-coding RNAs
involved in PTGS in all eukaryotes .
Transcribed from genomic DNA mainly by RNA
poly II.
Nascent transcript known as pri-miR, then premiR and finally form mature miR.
Generate dsRNA with the target mRNA which
is chopped by different nucleases.
3. First miR lin-4 was discovered in 1993 by Victor
Ambros in C. elegans
Regulate lin-14 protein.
In 2000 second miR (let-7) characterized in
C. elegans
Total 24,521 miRs discovered so far.
MicroRNA Database. (2013). (http://www.mirbase.org/)
4. According to standard nomenclature system, name of
any MicroRNA is written as mir-123.
miR = MicroRNA (mature form).
mir = Precursor MicroRNA.
Number indicates order of discovery.
Annotated with an additional lower case letter e.g.miR-123a & miR-123b, if deference in only one or two
nucleotides.
5. Additional dash-number suffix e.g., miR-123-1 & miR-
123-2, if produce same miR but transcribed from
different places in the genome of same organism.
When two miRs originate from opposite arms of the
same mir, then they are denoted with a -3p or -5p
suffix.
When relative expression levels are known, then an
asterisk (*) are use to differentiate e.g.- miR-123 (more)
and miR-123*(less).
6. Species specific miR are denoted as below hsa = Homo sapiens (Human)
oar = Ovis aries (Sheep)
ath = Arabidopsis thaliana (model plant)
d = Drosophila
7. Genomic DNA
Transcription (Poly II)
In Side Nucleus
Pri-miRNA
Drosa+DGCR8 complex
Pre-miRNA
Exportin- 5
Pre-miRNA
In Side Cytoplasm
Dicer
Mature-miRNA
9. Although the miRNA is only 24 nucleotides long,
But its 5' and 3' ends seem to have distinct roles• miRNAs can regulate their targets simply by strong
pairing with so-called seed sequence that consist of just
seven or eight bases complementary to the miRNA 5' end.
•miRNA 3' ends provide an additional measure of
regulatory control by permitting the function of target
sites that have only limited complementarity to the
miRNA 5' end.
11. miR can regulate gene expression in two ways:-
1. Indirect- activating/deactivating regulatory elements.
2. Direct- making double stranded transcript by binding
to regulating genes.
12. miRNA is regulated by transcription factors (TFs) which
bind to few kb to more than 50 kb upstream of the miRNA
genes.
Very few exact TF binding sites have been identified
experimentally.
14. When plants are subjected to other than ideal growing
-
-
conditions, then it considered to be under stress.
Plants are sessile hence cannot escape from stress.
Stress may trigger a wide range of plant responses:Altered gene expression
Cellular metabolism
Changes in growth rates and crop yield, etc.
15.
16. Biotic – Imposed by another living organism
Abiotic – Arising from an excess or deficit in the
physical and chemical environment.
BIOTIC STRESSES
Caused by living
organisms
•Fungi
•Bacteria
•Insects
•Herbivores
•Other plants/competition
ABIOTIC STRESSES
Environmental, nonbiological
•Temperature (high / low)
•Water (high / low)
•Salt
•Radiation
•Chemical
•Nutrition deficiency
17. Function:
Stimulates early growth and
formation, hastens maturity, promotes
production and makes plants hardy.
root
seed
Symptoms: Small root growth, spindly stalk, delayed
maturity, purplish discoloration of leaves, dying of tips
of older leaves, and poor fruit and seed development.
23. Out of many miR, miR399 are most studied.
Which is strongly induced upon P starvation.
It is a family of nearly similar 6 different miR named as
miR399a,
miR399b
miR399c,
miR399d,
miR399f in case of Arabidopsis.
The target for this miR is PHO2 gene.
Binds to the 5’ UTR of PHO2 transcripts.
miR399e,
24. Conclusion
Plants are sessile in nature so, continuously exposed to
different stress.
It is interesting to know the role of miRNAs, involved
in the regulation of plant abiotic stress.
To find out stress-responsive miRNAs, smallRNA
libraries were created and sequenced with pooled
RNAs from plants treated with different abiotic
stresses
25. miR399 are most studied in P starvation state.
This miR down regulate the PHO2 gene transcripts.
Expression of this miR is also tightly regulated by an
transcription factor MYB-2 in Arabidopsis.
Sun et al., 2010
26. Baek, D., Park, H. C., Kim, M. C.& Yun, D.-J. (2013). The role of Arabidopsis MYB2
in miR399f-mediated phosphate-starvation response. Plant Signaling & Behavior
8(3): 234-238.
Bartel, D. P. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function.
Cell 116(2): 281-297.
Fujii, H., Chiou, T.-J., Lin, S.-I., Aung, K.& Zhu, J.-K. (2005). A miRNA Involved in
Phosphate-Starvation Response in Arabidopsis. Current Biology 15(22): 20382043.
Großhans, H., & Filipowicz, W. (2008). Molecular biology: the expanding world of
small RNAs. Nature 451(7177): 414-416.
Krol, J., Loedige, I. & Filipowicz, W. (2010). The widespread regulation of microRNA
biogenesis, function and decay. Nature Reviews Genetics 11(9): 597-610.
MicroRNA Database. (2013).
page.<http://www.mirbase.org>. Accessed 2013 Nov 07.
Sun, W., Julie Li, Y.-S., Huang, H.-D., Shyy, J. Y.& Chien, S. (2010). microRNA: a
master regulator of cellular processes for bioengineering systems. Annual Review
Of Biomedical Engineering12(1):21-27.
Sunkar, R. & Zhu, J.-K. (2004). Novel and stress-regulated microRNAs and other
small RNAs from Arabidopsis. The Plant Cell Online 16(8): 2001-2019.