This document discusses three plant breeding methods: bulk method, pedigree method, and single seed descent method. The bulk method involves growing segregating generations in bulk with selection in later generations to isolate homozygous lines. The pedigree method uses individual plant selection from F2 onward. The single seed descent method modifies the bulk method by harvesting a single seed from each F2 plant to maintain equal survival of segregates.
Plant breeding methods of vegetatively propagated crops Roksana Aftab Ruhi
Vegetatively propagated crops are bred by intentionally crossing of closely or distantly related individual to produce new crop varieties or lines with desirable traits. Breeding of vegetative crops have successfully improved quality, yield, tolerance of crops to environmental pressure. Breeding helps in producing crops that are resistant to viruses, fungi and bacteria and helps in longer storage period for the harvested crop.
Clone is the progeny of a single plant, produced by asexual reproduction
Clonal selection is the selection of the most desirable members of a clone for continued vegetative propagation rather than for sexual reproduction.
The members of a clone keep up genetic constancy.
So by clonal selection and continued vegetative propagation, the desirable qualities of plants can be maintained for long.
pureline is the progeny of single homozygous self pollinated crop species and progeny test is the selection of patental lines based on the progeny performance
In this presentation you will come to know about the HANDLING OF SEGREGATING GENERATIONS, that is (PEDIGREE METHOD, MASS PEDIGREE METHOD, BULK METHOD, SINGLE SEED DESCENT METHOD).
Plant breeding methods of vegetatively propagated crops Roksana Aftab Ruhi
Vegetatively propagated crops are bred by intentionally crossing of closely or distantly related individual to produce new crop varieties or lines with desirable traits. Breeding of vegetative crops have successfully improved quality, yield, tolerance of crops to environmental pressure. Breeding helps in producing crops that are resistant to viruses, fungi and bacteria and helps in longer storage period for the harvested crop.
Clone is the progeny of a single plant, produced by asexual reproduction
Clonal selection is the selection of the most desirable members of a clone for continued vegetative propagation rather than for sexual reproduction.
The members of a clone keep up genetic constancy.
So by clonal selection and continued vegetative propagation, the desirable qualities of plants can be maintained for long.
pureline is the progeny of single homozygous self pollinated crop species and progeny test is the selection of patental lines based on the progeny performance
In this presentation you will come to know about the HANDLING OF SEGREGATING GENERATIONS, that is (PEDIGREE METHOD, MASS PEDIGREE METHOD, BULK METHOD, SINGLE SEED DESCENT METHOD).
Study in respect to origin distribution of species –wild relatives- and forms of breeding objectives –major breeding procedure for development of hybrids varieties in wheat
SELECTION METHODS IN SELF-POLLINATED CROPS viz., mass selection, pureline sel...AMIT RANA Ph. D Scholar
MASS SELECTION
Mass selection is a method of breeding in which individual plants are selected on the basis of phenotype from a mixed population , their seeds are bulked and used to grow the next generation.
Selection cycle may be repeated one or more times to increase the frequency of favorable alleles - phenotypic recurrent selection.
PURELINE SELECTION
A pureline is the progeny of a single homozygous plant of a self-pollinated species. All the plants in a pureline have the same genotype and the phenotypic variation within a pureline is due to the environment alone and has no genetic basis. However, variation within a pureline is not heritable. Hence selection in a pureline is not effective. Johannsen (1903,1926), a Danish biologist, developed the concept of pureline theory working with Princess variety of French bean (Phaseolus vulgaris), which showed variation for seed size. From a commercial seed lot he selected seeds of different sizes and grew them separately. The progenies differed in seed size. Progenies from larger seeds produced larger seeds than those obtained from smaller seeds. This clearly showed that the variation in seed size in the commercial seed lot of princess variety had a genetic base. As a result selection for seed size was effective.
Introduction
PEDIGREE SELECTION
Pedigree selection is a widely used method of breeding self-pollinated species.
A key difference between pedigree selection and mass selection or pure-line selection is that hybridization is used to generate variability (for the base population), unlike the other methods in which production of genetic variation is not a feature.
The method was first described by H. H. Lowe in 1927.
Pedigree selection is a breeding method in which the breeder keeps records of the ancestry of the cultivar.
The base population is established by crossing selected parents, followed by handling an actively segregating population.
Documentation of the pedigree enables breeders to trace parent–progeny back to an individual F2 plant from any subsequent generation.
The breeder should develop an effective, easy to maintain system of record keeping.
Pedigree selection is applicable to breeding species that allow individual plants to be observed, described, and harvested separately.
Gene mutations – introduction – definition – a brief history – terminology –
classification of mutations – characteristic features of mutations – spontaneous
mutations and induced mutations
Gene mutations – artificial induction of mutations – physical and chemical
mutagens – molecular basis of mutations – detection of sex-linked lethals in
Drosophila by CLB technique – detection of mutations in plants – the importance of
mutation in plant breeding programmes –
Presentation on the relevance of self-incompatibility, methods to overcome self-incompatibility, advantages and disadvantages, utilization in crop improvement
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
What is greenhouse gasses and how many gasses are there to affect the Earth.
Presentation on Bulk Method of Breeding
1. 1. Handling of segregating generations- bulk method-
procedure- merits, demerits and achievements of bulk
method
2. Comparison between pedigree method and bulk method
3. Single seed descent method.
Submitted to:
Dr. Bhimsen Naik, Assoc. Prof. (PBG)
Dr. Kaushik Kumar Panigrahi, Assoc. Prof. (PBG)
Submitted by:
Kaustuv Kumar Mukherjee
Adm No: 17HO/16
2.
3. Bulk population method of breeding in self –pollinated crop is also
known as mass method or population method of breeding. It was first
used by Nilsson Ehle in 1908. It refers to a species is grown in bulk plot
( from F1 to F5 ) with or without selection, a part of the bulk seed is
used to grow the next generation and individual plant selection is
practiced in F6 or later generation. In this method duration of bulking
may vary from 6-7 to 30 generation.
4. This method is suitable and most convenient for handling
the segregating generation of cereals, smaller millet, grain
legume and oilseeds. This may be used for three different
purposes.
i) Isolation of homozygous lines.
ii) Waiting for the opportunity of selection.
iii) Opportunity for natural selection to change the
composition of the population.
5. 1) Hybridization: Parents are selected according to the objective of the breeding programme and crossed.
2) F1 Generation: The F1 generation ( 10 to 25 F1) is space planted and harvested in bulk.
3) F2-F6 – Generation:F2 to F6 generations are planted at commercial seed rate and spacing. These generations
are harvested in bulk. During these generations the population size should be as possible, preferably 30 to 50
thousand plants should be grown in each generation.
4) F7 Generation: About 30 – 50 thousand plants are space planted and out of this only 1000 to 5000 plants with
superior phenotypes are selected and their seeds harvested separately. Selection is made on the basis of phenotypes
of plants, grain characteristics etc.
5) F8 Generation: Individual plant progenies are grown in single or multi row plots. Most of the progenies would be
homozygous and are harvested in bulk. Weak and inferior progenies are rejected and only 100- 300 individual
plant progenies with desirable characters are selected.
6) F9 Generation: Preliminary yield trial is conducted along with standard variety as check. The evaluation of
progeny is done for important desirable characteristics. Quality test may be conducted to reject the undesirable
progenies.
7) F10- F12 Generation: Replicated yield trails are conducted at several locations using standard commercial
varieties as check. The lines are evaluated for important agronomic characteristics. If lines are superior to the
standard check, released as new varieties.
8) F13 Generation: Seed multiplication of the newly released variety for distribution to the farmers.
6.
7. 1) This method simple, convenient and inexpensive.
2) Little work and attention is required in F2 and subsequent
generation.
3) No pedigree record is to be kept.
4) It eliminates undesirable types and increases the frequency of
desirable types by artificial selection.
5) It is suitable for studies on the survival of genes and
genotypes in populations.
6) There are greater chances of isolation of Transgressive
segregates than pedigree method.
8. 1) It takes much longer to develop a new variety.
2) It provides little opportunity for the breeder to exercise his
skill in selection.
3) A large number of progenies have to be selected at the
end bulking period.
4) Information of inheritance of characters cannot be
obtained like that of pedigree method.
9. This method has between used in Barley crop for
developing some varieties from the crosses ( Allas X
Vaughn), like Arival, Beecher, Glacier, etc. In India only
one variety “Narendra Rai” has been developed in Brown
Mustard. This method has a limited application in
practical plant breeding.
10.
11. Pedigree Method Bulk Method
Individuals plants are selected in F2 and
Segregation generation and individual plant
progenies are grown
F2 and the subsequent generation are
maintained as bulk
Artificial selection, Artificial disease epidemics
are an integral parts
Artificial selection, artificial disease epidemic
are created to assist natural selection.
No role of Natural section Natural selection determines the composition of
population.
Pedigree record have to be maintained
which is laborious and time consuming
No pedigree records are maintained
It takes 12 years to develop new variety More than 12 years bulk population > 10 years
for effective natural selection
Widely used method Limited use
Needs close attention from F2 on words It is simple convenient.
Segregating generation are space planted to
permit individual plant selection.
Bulk population are planted at commercial
planting rate
Population size is small Larger population are grown and the
natural selection expected to the increase the
chances recovery of transgressive segregants
12.
13. Single seed descent method is the modification of bulk method of breeding. But the
modification is in such a way that it allows the equal survival of a segregates. The
idea of this method was first suggested by Goulden (1941) and subsequently
modified by Brim (1960).
General principles involved in this method is that, only one ( single) seed collected
from each of the F2 plants ( 10000 to 20000) and then bulked to grow the next
( F3) generation. Similar practised is continued till F5 or F6 generation, when the
plant would become nearly homozygous. In F5 and F6 generation, when
individual’s plants are selected and harvested separately. Their progenies are also
grown separately in next generation. Selection is done among the programme ad
promising one is select to conduct replicated yield trails and quality test conducted
in F7- F8 generation and coordinated yield trial in F9- F10 generation.
14. 1. Single seed descent method advantages the generations with possible
speed in a conventional breeding method.
2. It requires very little space, effects and labours.
3. It makes the best use of green house and offseason nursery, facilitates
because in that two to three generations can be raised in each year.
4. It ensures that the plants retained at the end population are random
sample from F2 population.
15. 1. It does not permit any from of selection in natural or artificial.
2. In each successive generation the population size between
progressive smaller due to poor germination.