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Microscopes and
microscopy
Microscopes and
microscopy
 A microscope is an optical instrument consisting of one
or more lenses in order to magnify images of minute
objects. Microscopes are of two categories.
(I) Light Microscope: Magnification is obtained by a system
of optical lenses using light waves. It includes (i) Bright
field (ii) Dark field (iii) Fluorescence (iv) Phase contrast
and
(v) UV Microscope
(ii) Electron Microscope: A system of electromagnetic lenses
and a short beam of electrons are used to obtain
magnification. It is of two types: (I) Transmission electron
microscope (TEM) (ii) Scanning electron microscope
(SEM)
Light microscopes can be broadly grouped into two
categories
(a) Simple microscope : It consists of only one bi-convex
lens along with a stage to keep the specimen.
(b) Compound microscope : It employs two separate
systems namely, (i) objective and (ii) ocular (eye
Components of Microscope
The compound student microscope is a bright field microscope. It
consists of mechanical and optical parts.
1. Mechanical parts
These are secondary but are necessary for working of a microscope.
‘Base’, which is horsehoe, shaped supports the entire framework for all
parts. From the base, a ‘Pillar” arises. At the top of the pillar through
Inclination Joint’ arm or limb is attached.
At the top of the pillar, a stage with a central circular opening called
aperture’ is fixed, with a stage clip to fix the microscopic slide. Beneath
the stage, there is one stage called ‘sub stage’ which carries the
condenser. At the top of the arm, a hollow cylindrical tube of standard
diameter is attached in-line with the stage aperture, called body tube.
The body tube moves up and down by two separate arrangements called
‘coarse adjustment’ worked with pinion head and fine adjustment
worked with micrometer head. At the bottom of the body tube an
arrangement called revolving nose-piece is present for screwing
different objectives. At the top of the body tube eye- piece is fixed.
2. Optical parts
It includes mirror, condenser, objective and ocular lenses. All the
optical parts should be kept in perfect optical axis.
a. Objectives : Usually 3 types of magnifying lenses (i) Low power
objective (10x) (ii) High dry objective (45x) and (iii) Oil immersion
objective (100x)
b. Eye-piece : Mostly have standard dimensions and made with different
power lenses. (5x, 10x, 15x, 20x). A compound microscope with a single
single eyepiece is said to be monocular, and one with two eyepieces is
said to be binocular.
c. Condenser : Condenses the light waves into a pencil shaped cone there
by preventing the escape of light waves. Also raising or lowering the
condenser can control light intensity. To the condenser, iris diaphragm
Oil immersion
 The refractive index of air is 1.0, which is less than
of glass (1.56). When the light rays passes from denser
medium to lighter medium, the rays get refracted.
 Better resolution can be obtained by using liquid
medium oil, whose refractive index (1.51) is almost
equal to glass. The oil generally used is cedar wood
oil.
Resolving power of the light
Microscope
The usefulness of the microscope depends on the resolving power,
which is the basic limitation of bright field microscope.
Resolving power is defined as the ability to distinguish two adjacent
points as distinct and separate.
The resolving power of microscope is the function of wavelength of
light used and the numerical aperture (NA) of the objective lenses.
Magnification beyond the resolving is of no value.
The numerical aperture is a measure of the ability of the objective lens to capture
light.
NA = n sin
Where
n = Refractive index of the material between the specimen and
the lens
Sin = Half the value of cone of light that enters through the
objective.

 Therefore resolving power =
2 x NA
= Wavelength of the light used It implies that
- Higher the NA higher will be the degree of resolving power
- Shorter the wavelength of light
higher will be the resolving power
For a low power objective with an NA of 0.25 the resolving power is calculated as
550 nm 550
 Resolving power = =
2x0.25 0.50
= 1100 nm or 1.1 m
The resolving power of the lens system is 1.1m, any object smaller than 1.1m
could not be seen but an object larger than 1.1m is visible.
For an oil immersion lens the NA is often 1.25 and the resolving power is
calculated as
550 nm 550
 Resolving power = =
2x1.25 2.50
= 220 nm or 0.22 m
In this, the resolving power of the lens system is 0.22m, any object smaller
than 0.22m could not be seen but an object larger than 0.22m is visible.
Magnification
 Obtained by both the objective [which produces real image] and ocular [which
produces virtual image].
 The magnifying power of a compound light microscope is the product of the
individual magnifying powers of the ocular lens and the objective lens.
 Magnification beyond the resolving power will result in larger images but less
distinct in their details and appearance.
Ocular Objective Magnification
10 X 10 X (low power) 100 X
10 X 45 X (high “dry”) 450 X
10 X 100 X (oil immersion) 1000 X
Dark-field microscopy
 In dark-field microscopy : specimen is brightly illuminated against a dark
background.
 This type of microscope possess a special type of condenser, which prevents
parallel and the oblique rays entering in to the objective and thus making the
microscopic field dark.
 In the absence of specimen the entire field will appear as dark. In the presence
of specimen, which differs in refractive index, the oblique rays are scattered by
reflection and refraction and the scattered rays enter the objective making the
specimen brightly illuminated.
 Maximum magnification of 1500x and resolution of 100-200 mm can be
obtained. It is useful in studying the morphology and motility of
microorganisms.
 Dark field is especially useful for finding cells in suspension. Dark field makes it
easy to obtain the correct focal plane at low magnification for small, low
specimens.
Use dark field for
 Initial examination of suspensions of cells such as yeast, bacteria, small
protists, or cell and tissue fractions including cheek epithelial cells,
chloroplasts, mitochondria, even blood cells (small diameter of
pigmented cells makes it tricky to find them sometimes despite the
color).
 Initial survey and observation at low powers of pond water samples,
or soil infusions, purchased protist or metazoan cultures.
 Examination of lightly stained prepared slides. Initial location of any
specimen of very small size for later viewing at higher power.
 Determination of motility in cultures
FLUORESCENCE MICROSCOPE
 Certain chemical compounds absorb light and reemit part of the
energy as light of longer wavelength. Such substances are called
fluorescent and the phenomenon is termed as fluorescence.
 In fluorescence microscopy, a high intensity mercury lamp is used as
the light source, which emits white light.
 The exciter filter transmits only blue light to the specimen and blocks
out all the colours. The blue light is reflected downward to the
by the dichroic mirror.
 The specimen is stained with fluorescent dye. Only certain portions of
the specimen retain the dye, others do not
 The stained portion of the specimen absorb blue light and emit
green light, which passes upwards, penetrate the dichroic mirror and
reaches the barrier filter.
 This filter allows only green light to pass through and the eye
receives only green light emitted from the specimen against the
black background whereas unstained portions are invisible.
 Also, ultraviolet light is used to excite molecules so that they release
light of a different wavelength.
 This technique is especially important in immunology in which the
reactions of antigens and antibodies are studied in great detail.
Fluorescent antibody staining is now widely used in diagnostic
procedures to determine whether an antigen is present.
 Not all bacteria get stained with fluorescent chemicals.
Dyes that cause live cells to
florescence green and dead one red

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Microscopes and microscopy

  • 2. Microscopes and microscopy  A microscope is an optical instrument consisting of one or more lenses in order to magnify images of minute objects. Microscopes are of two categories. (I) Light Microscope: Magnification is obtained by a system of optical lenses using light waves. It includes (i) Bright field (ii) Dark field (iii) Fluorescence (iv) Phase contrast and (v) UV Microscope (ii) Electron Microscope: A system of electromagnetic lenses and a short beam of electrons are used to obtain magnification. It is of two types: (I) Transmission electron microscope (TEM) (ii) Scanning electron microscope (SEM)
  • 3. Light microscopes can be broadly grouped into two categories (a) Simple microscope : It consists of only one bi-convex lens along with a stage to keep the specimen. (b) Compound microscope : It employs two separate systems namely, (i) objective and (ii) ocular (eye
  • 4. Components of Microscope The compound student microscope is a bright field microscope. It consists of mechanical and optical parts. 1. Mechanical parts These are secondary but are necessary for working of a microscope. ‘Base’, which is horsehoe, shaped supports the entire framework for all parts. From the base, a ‘Pillar” arises. At the top of the pillar through Inclination Joint’ arm or limb is attached. At the top of the pillar, a stage with a central circular opening called aperture’ is fixed, with a stage clip to fix the microscopic slide. Beneath the stage, there is one stage called ‘sub stage’ which carries the condenser. At the top of the arm, a hollow cylindrical tube of standard diameter is attached in-line with the stage aperture, called body tube. The body tube moves up and down by two separate arrangements called ‘coarse adjustment’ worked with pinion head and fine adjustment worked with micrometer head. At the bottom of the body tube an arrangement called revolving nose-piece is present for screwing different objectives. At the top of the body tube eye- piece is fixed.
  • 5.
  • 6. 2. Optical parts It includes mirror, condenser, objective and ocular lenses. All the optical parts should be kept in perfect optical axis. a. Objectives : Usually 3 types of magnifying lenses (i) Low power objective (10x) (ii) High dry objective (45x) and (iii) Oil immersion objective (100x) b. Eye-piece : Mostly have standard dimensions and made with different power lenses. (5x, 10x, 15x, 20x). A compound microscope with a single single eyepiece is said to be monocular, and one with two eyepieces is said to be binocular. c. Condenser : Condenses the light waves into a pencil shaped cone there by preventing the escape of light waves. Also raising or lowering the condenser can control light intensity. To the condenser, iris diaphragm
  • 7. Oil immersion  The refractive index of air is 1.0, which is less than of glass (1.56). When the light rays passes from denser medium to lighter medium, the rays get refracted.  Better resolution can be obtained by using liquid medium oil, whose refractive index (1.51) is almost equal to glass. The oil generally used is cedar wood oil.
  • 8. Resolving power of the light Microscope The usefulness of the microscope depends on the resolving power, which is the basic limitation of bright field microscope. Resolving power is defined as the ability to distinguish two adjacent points as distinct and separate. The resolving power of microscope is the function of wavelength of light used and the numerical aperture (NA) of the objective lenses. Magnification beyond the resolving is of no value.
  • 9. The numerical aperture is a measure of the ability of the objective lens to capture light. NA = n sin Where n = Refractive index of the material between the specimen and the lens Sin = Half the value of cone of light that enters through the objective.   Therefore resolving power = 2 x NA = Wavelength of the light used It implies that - Higher the NA higher will be the degree of resolving power - Shorter the wavelength of light higher will be the resolving power
  • 10. For a low power objective with an NA of 0.25 the resolving power is calculated as 550 nm 550  Resolving power = = 2x0.25 0.50 = 1100 nm or 1.1 m The resolving power of the lens system is 1.1m, any object smaller than 1.1m could not be seen but an object larger than 1.1m is visible. For an oil immersion lens the NA is often 1.25 and the resolving power is calculated as 550 nm 550  Resolving power = = 2x1.25 2.50 = 220 nm or 0.22 m In this, the resolving power of the lens system is 0.22m, any object smaller than 0.22m could not be seen but an object larger than 0.22m is visible.
  • 11. Magnification  Obtained by both the objective [which produces real image] and ocular [which produces virtual image].  The magnifying power of a compound light microscope is the product of the individual magnifying powers of the ocular lens and the objective lens.  Magnification beyond the resolving power will result in larger images but less distinct in their details and appearance. Ocular Objective Magnification 10 X 10 X (low power) 100 X 10 X 45 X (high “dry”) 450 X 10 X 100 X (oil immersion) 1000 X
  • 12. Dark-field microscopy  In dark-field microscopy : specimen is brightly illuminated against a dark background.  This type of microscope possess a special type of condenser, which prevents parallel and the oblique rays entering in to the objective and thus making the microscopic field dark.  In the absence of specimen the entire field will appear as dark. In the presence of specimen, which differs in refractive index, the oblique rays are scattered by reflection and refraction and the scattered rays enter the objective making the specimen brightly illuminated.  Maximum magnification of 1500x and resolution of 100-200 mm can be obtained. It is useful in studying the morphology and motility of microorganisms.  Dark field is especially useful for finding cells in suspension. Dark field makes it easy to obtain the correct focal plane at low magnification for small, low specimens.
  • 13. Use dark field for  Initial examination of suspensions of cells such as yeast, bacteria, small protists, or cell and tissue fractions including cheek epithelial cells, chloroplasts, mitochondria, even blood cells (small diameter of pigmented cells makes it tricky to find them sometimes despite the color).  Initial survey and observation at low powers of pond water samples, or soil infusions, purchased protist or metazoan cultures.  Examination of lightly stained prepared slides. Initial location of any specimen of very small size for later viewing at higher power.  Determination of motility in cultures
  • 14.
  • 15. FLUORESCENCE MICROSCOPE  Certain chemical compounds absorb light and reemit part of the energy as light of longer wavelength. Such substances are called fluorescent and the phenomenon is termed as fluorescence.  In fluorescence microscopy, a high intensity mercury lamp is used as the light source, which emits white light.  The exciter filter transmits only blue light to the specimen and blocks out all the colours. The blue light is reflected downward to the by the dichroic mirror.  The specimen is stained with fluorescent dye. Only certain portions of the specimen retain the dye, others do not
  • 16.  The stained portion of the specimen absorb blue light and emit green light, which passes upwards, penetrate the dichroic mirror and reaches the barrier filter.  This filter allows only green light to pass through and the eye receives only green light emitted from the specimen against the black background whereas unstained portions are invisible.  Also, ultraviolet light is used to excite molecules so that they release light of a different wavelength.  This technique is especially important in immunology in which the reactions of antigens and antibodies are studied in great detail. Fluorescent antibody staining is now widely used in diagnostic procedures to determine whether an antigen is present.  Not all bacteria get stained with fluorescent chemicals.
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  • 18.
  • 19. Dyes that cause live cells to florescence green and dead one red