This document discusses metallic nanoparticles and their applications in biomedical sciences and engineering. Metallic nanoparticles such as iron oxide nanoparticles, gold nanoparticles, and silver nanoparticles have unique properties like high surface-to-volume ratio that make them useful for applications in imaging, drug delivery, and therapy. Various methods for synthesizing these nanoparticles like chemical coprecipitation and conjugating them with ligands allow them to be used as contrast agents for MRI, CT, and other imaging modalities. Targeted delivery of nanoparticles can help image and treat diseases like cancer in a non-invasive manner.
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Nanoparticles are made of a macromolecular material which can be of synthetic or natural origin.
This presentation includes the information's about nano materials, their toxicity, types, causes of toxicity, mode of entry, toxic effects, different substances of nano materials and their toxicity.
Different types of methods can be used for the preparation of Magnetic Nanoparticles, their advantages and disadvantages and applications of the materials in various fields are given in the presentation
Nanoparticles are solid colloidal particles ranging in size from 10 to 1000 nm.
Nanoparticles are made of a macromolecular material which can be of synthetic or natural origin.
This presentation includes the information's about nano materials, their toxicity, types, causes of toxicity, mode of entry, toxic effects, different substances of nano materials and their toxicity.
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the presentation gives brief description about magnetic nanoparticles, types of magnetic nanoparticles, magnetic nanocomposite and application of magnetic nanoparticles.
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Nanomaterials in biomedical applicationsumeet sharma
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the presentation gives brief description about magnetic nanoparticles, types of magnetic nanoparticles, magnetic nanocomposite and application of magnetic nanoparticles.
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A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
2. Abstract
• Metallic nanoparticles have fascinated scientist for over a century and are now heavily
utilized in biomedical sciences and engineering.
• They are a focus of interest because of their huge potential in nanotechnology.
• Metallic nanoparticles can be synthesized and modified with various chemical functional
groups which allow them to be conjugated with antibodies, ligands, and drugs
• Therefore, opening a wide range of applications in biotechnology, magnetic separation,
and concentration of target analytes and vehicles for gene and drug delivery and more
importantly diagnostic imaging.
3.
4. • Various imaging modalities have been developed:
MRI, CT, PET, ultrasound, SERS, and optical imaging as an aid to image various disease
states.
• These are differ in both techniques and instrumentation and more importantly require
a contrast agent with unique physiochemical properties.
• This led to the invention of various nanoparticulated contrast agent such as: magnetic
nanoparticles (Fe3O4), gold, and silver nanoparticles for their application in these
imaging modalities.
• In this section, we aim to provide an introduction to magnetic nanoparticles (Fe3O4),
gold nanoparticles, nanoshells and nanocages, and silver nanoparticles followed by
their synthesis, physiochemical properties, and applications in the diagnostic imaging
and therapy of cancer.
5. excellent properties of Metallic nanoparticles
• Nanomaterials properties compared to their larger counterparts:
• High surface-to-volume ratio.
• Due to these unique properties, they make excellent candidate for
biomedical applications
6. • In general, nanoparticles used in the field of biotechnology range in particle
size between 10 and 500 nm, seldom exceeding 700 nm.
• The nanosize of these particles allows various communications with
biomolecules on the cell surfaces and within the cells
• Its potential application in drug delivery system and noninvasive imaging
offered various advantages over conventional pharmaceutical agents.
7. • it is important that the nanoparticulate systems should be stable,
biocompatible, and selectively directed to specific sites in the body after
systemic administration.
• More specific targeting systems are designed to recognize the targeted cells
such as cancer cells. This can be achieved by conjugating the nanoparticle
with an appropriate ligand, which has a specific binding activity with respect
to the target cells.
• In addition, nanoparticles provide a platform to attach multiple copies of
therapeutic substance on it and hence increase the concentration of
therapeutic and diagnostic substances at the pathological site.
8. • the concentration and dynamics of the active molecule can be varied
by controlling the particle size of nanoparticles (>3–5 nm).
• This control in particle size in conjugation with surface coating with
ligand allows them to veil against body’s immune system, enabling
them to circulate in the blood for longer period of time.
• These advances in the field of biotechnology have opened an endless
opportunities for molecular diagnostics and therapy.
9. • Targeted (active or passive), these nanocarriers can be designed in a way to
facilitate them to act as imaging probes using variety to techniques such as:
• ultrasound (US), X-ray, computed tomography (CT), positron emission
tomography (PET), magnetic resonance imaging (MRI), optical imaging, and
surface-enhanced Raman imaging (SERS).
• Hence, these so-called “molecular imaging probes” can noninvasively provide
valuable information about differentiate abnormalities in various body
structures and organs to determine the extent of disease, and evaluate the
effectiveness of treatment.
• Thus short molecular imaging enables the visualization of the cellular function
and the follow-up of the molecular process in living organisms without
perturbing them.
10.
11. Enhanced Permeability and Retention (EPR) effect
• The enhanced permeability and retention (EPR) effect is the mechanism by which high molecular weight non
targeted drugs accumulate in tissues that offer increased vascular permeability, such as in sites of
inflammation or cancer.
12. Active and Passive targeting of nanoparticles
• Passive targeting versus active targeting strategies
for anticancer drug delivering system.
• (Top) By the enhanced permeability and retention
effect, nanoparticles (NPs) passively diffuse
through the leaky vasculature and accumulate in
tumor tissues.
• In this case, drug may be released in the
extracellular matrix and then diffuse through the
tissue.
• (Down) In active targeting, once particles have
extravasated in the tumor tissue, the presence of
targeting ligands (e.g., antibody, carbohydrate) on
the NP surface facilitates their interaction with
receptors that are present on tumor cells, resulting
in enhanced accumulation and preferential cellular
uptake through receptor mediated endocytosis
13. Iron Oxide Nanoparticles
• Iron (III) oxide (Fe2O3) is a reddish brown, inorganic compound which is paramagnetic in
nature and also one of the three main oxides of iron, while other two being FeO and Fe3O4.
• Due to their ultrafine size, magnetic properties, and biocompatibility, superparamagnetic
iron oxide nanoparticles (SPION) have emerged as promising candidates for various
biomedical applications such as:
enhanced resolution contrast agents for MRI
targeted drug delivery and imaging
hyperthermia
gene therapy
stem cell tracking
molecular/cellular tracking
magnetic separation technologies
early detection of inflammatory, cancer, diabetes, and atherosclerosis
14. To understanding of the molecular biology of various diseases recommended the need of
homogeneous and targeted imaging probes along with a narrow size distribution in
between 10 and 250 nm in diameter.
various chemical routes for synthesis of magnetic nanoparticles in this diameter range:
sol–gel syntheses
sonochemical reactions
hydrothermal reactions
hydrolysis and thermolysis of precursors
flow injection syntheses
electrospray syntheses
However, the most common method for the production of magnetite nanoparticles is the
chemical coprecipitation technique of iron salts.
16. Coprecipitation:
• Advantage of the coprecipitation :
• large amount of nanoparticles can be synthesized but with limited control on size
distribution.
This is mainly due to that the kinetic factors are controlling the growth of the crystal.
• Particulate magnetic contrast agents synthesized using these methods include:
ultrasmall particles of iron oxide (USPIO) (10–40 nm)
small particles of iron oxide (SPIO) (60–150 nm)
• Monocrystalline USPIOs are also called as monocrystalline iron oxide
nanoparticles (MIONs), whereas MIONs when cross-linked with dextran they are
called crosslinked iron oxide nanoparticles CLIO
17. • The modification of the dextran coating by carboxylation
leads to a shorter clearance half-life in blood
• A carboxyalkylated polysaccharide coated iron oxide
nanoparticle, is already described as a good first-pass
contrast agent
• In order to improve the cellular uptake, these particles can
be modified with a surface coating so that they can be
easily conjugated to drugs, proteins, enzymes, antibodies,
or nucleotides and can be directed to an organ, tissue, or
tumor.
• While traditional contrast agents distribute rather
nonspecifically, targeted molecular imaging probes based
on iron oxide nanoparticles have been developed that
specifically target body tissue or cells
19. Schematic representation of in vitro and in vivo gene delivery using magnetofection
(grey color pattern on the left corner of the image represents the direction of
movement of MNPs under the influence of magnet).
20. Some applications of iron oxide nanoparticles in biomedical imaging
A biocompatible iron oxide nanoprobe coated with poly ethylene glycol
(PEG), which is capable of specifically targeting glioma tumors via the surface-
bound targeting peptide.
MRI studies showed the preferential accumulation of the nanoprobe within
gliomas.
• The further development and modification of the complexes of iron oxide
along with dendrimers, polymeric nanoparticles, liposomes, and solid lipid
nanoparticles are widely studied.
• However, the toxicity of these magnetic nanoparticles to certain types of
neuronal cells is still the matter of concern.
21. Superparamagnetic Iron Oxide Nanoparticles as MRI contrast agents for
Non-invasive Stem Cell Labeling and Tracking
22. Gold Nanoparticles
• Colloidal gold, also known as gold nanoparticles, is a suspension of nanometer-sized
particles of gold.
• The history of these colloidal solutions dates back to Roman times when they were used to
stain glass for decorative purposes.
• The modern scientific evaluation of colloidal gold did not begin until Michael Faraday’s
work of the 1850s, when he observed that the colloidal gold solutions have properties that
differ from the bulk gold.
• Hence the colloidal solution is either an intense red color (for particles less than 100 nm) or
a dirty yellowish color (for larger particles).
23. Applications of gold nanoparticles (AuNPs)
• Diagnosis and treating of disease such as targeted chemotherapy and in pharmaceutical
drug delivery due to their multifunctionality and unique characteristics.
• AuNPs can be conjugated with ligands, imaging labels, therapeutic drugs and other
functional moieties for site specific drug delivery application.
24. The characteristic properties for gold nanoparticles
• Small size (1–100 nm) and large surface-to-volume ratio
• Unique physical and chemical properties that can be changed according to
requirements of size, composition and shape
• Quantitive and qualitative target-binding properties
• Unique optical properties
25. Gold Nanoparticle optical properties
• These optical properties are conferred by the interaction of light with electrons on the
AuNP surface.
• At a specific wavelength of light, collective oscillation of electrons on the AuNP surface
cause a phenomenon called surface plasmon resonance (SPR), resulting in strong
extinction of light (scattering and absorption).
•
26. Cont…
• The particular wavelength of light where this occurs is strongly dependant on the AuNP size, shape,
surface and agglomeration state.
• The influence of AuNP size on the surface plasmon resonance is affect the absorption maximum (λ
max) which increases from 520nm to 570nm for 20nm and 100nm spherical AuNPs respectively.
• In comparison, AuNPs with diameters below 2nm do not exhibit surface plasmon resonance.
27. • The rod-shaped nanoparticles have two resonances:
• one due to plasmon oscillation along the nanorod short axis and another due to plasmon
oscillation along the long axis, which depends strongly on the nanorod aspect ratio (length-
to-width ratio).
The difference in color of the particle solutions is more dramatic for rods than for spheres.
This is due to the nature of plasmon bands (one for spheres and two for rods) that are
more sensitive to size for rods compared with spheres.
28. Photographs of aqueous solutions of gold nanospheres as a function of increasing dimensions
The size varies from 4 to 40 nm (TEMs a-e)
29. Photographs of aqueous solutions of gold nanorods as a function of increasing dimensions
The size varies from 1.3 to 5 nm for short rods (TEMs f-j) and 20 nm (TEM k) for long rods
30. synthesis of gold nanoparticles
• The most prevalent method for the synthesis of monodisperse spherical gold
nanoparticles was pioneered by Turkevich et al. in 1951.
• This method uses the chemical reduction of gold salts such as hydrogen
tetrachloroaurate (HAuCl4) using citrate as the reducing agent.
• This method produces monodisperse spherical gold nanoparticles in the
range of 10–20 nm in diameter.
• The gold surface offers a unique opportunity to conjugate ligands such as
oligonucleotides, proteins, and antibodies containing functional groups such
as thiols, mercaptans, phosphines, and amines, which demonstrates a strong
affinity for gold surface.
31. Examle of using gold nanoparticles for cancer imaging
• The use of gold nanoparticles for cancer imaging by selectively transporting AuNPs
into the cancer cell nucleus.
• Conjugat arginine–glycine–aspartic acid peptide (RGD) and a nuclear localization
signal peptide (NLS) to a 30-nm AuNPs via PEG (poly ethylene glycol).
• RGD is known to target αβ integrins receptors on the surface of the cell, whereas
NLS sequence lysine–lysine–lysine–arginine–lysine (KKKRK) sequence is known to
associate with importins in the cytoplasm, which enables the translocation to the
nucleus.
• The RGD-AuNPs specifically target the cytoplasm of cancer cells over that of normal
cells, and the RGD/NLS-AuNPs specifically target the nuclei of cancer cells over those
of normal cells.
33. Photodynamic therapy (PDT) of cancer
• Photodynamic therapy (PDT) is a two-stage treatment that combines light energy with a drug
(photosensitizer) designed to destroy cancerous cells after light activation.
• Photosensitizers are activated usually by a laser. The photosensitizer is nontoxic until it is
activated by light. However, after light activation, the photosensitizer becomes toxic to the
targeted tissue.
• Photosensitizers are molecules that can be activated by light in order to generate ROS that
can damage cell structures from microorganisms or from diseased mammalian cells leading
to cell death.
34. Reactive Oxygen Species (ROS)
• ROS: An unavoidable consequence of aerobic metabolism is production of reactive oxygen species (ROS).
• ROS include free radicals such as superoxide anion ( O 2 • − ), hydroxyl radical (•OH), as well as nonradical
molecules like hydrogen peroxide (H2O2), singlet oxygen (1O2), and so forth.
35. Photothermal therapy (PTT) of cancer
• The use of gold nanorods as photothermal agents.
• Photothermal therapy (PTT) is a procedure in which a photosensitizer is excited with specific band light (mainly
IR).
• This activation brings the sensitizer to an excited state where it then releases vibrational energy in the form of
heat.
• The heat is the actual method of therapy that kills the targeted cells.
• One of the biggest recent successes in photothermal therapy is the use of gold nanoparticles.
38. • The rod-shaped gold nanoparticles with the absorption in the IR region,
when selectively accumulated in tumors when bathed in laser light (in
the IR region), the surrounding tissue is barely warmed, but the
nanorods convert light to heat, killing the malignant cells.