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Acid-Base Biochemistry
Definitions
What is an acid?
What is a base?
Acid-Base Biochemistry
Definitions
Arrhenius
►Arrhenius suggested that acids are compounds that contain
hydrogen and can dissolve in water to release hydrogen ions into
solution. For example, hydrochloric acid (HCl) dissolves in water as
follows:
H2O
HCl (g) → H+
(aq) + Cl-
(aq)
Acid-Base Biochemistry
Definitions
►Arrhenius defined bases as substances that dissolve in water to
release hydroxide ions (OH-) into solution. For example, a typical base
according to the Arrhenius definition is sodium hydroxide (NaOH):
H2O
NaOH (s) → Na+
(aq) + OH-
(aq)
Acid-Base Biochemistry
Definitions
►The Arrhenius definition of acids and bases explains a number of
things. Arrhenius's theory explains why all acids have similar
properties to each other (and, conversely, why all bases are similar):
because all acids release H+ into solution (and all bases release OH-).
Acid-Base Biochemistry
Definitions
►The Arrhenius definition also explains Boyle's observation that acids
and bases counteract each other. This idea, that a base can make an
acid weaker, and vice versa, is called neutralization.
Acid-Base Biochemistry
Definitions
►Neutralization: As you can see from the equations, acids release H+
into solution and bases release OH-. If we were to mix an acid and
base together, the H+ ion would combine with the OH- ion to make
the molecule H2O, or plain water:
►H+
(aq) + OH-
(aq) → H2O
Acid-Base Biochemistry
Definitions
►The neutralization reaction of an acid with a base will always
produce water and a salt, as shown below:
►Acid Base Water Salt
►HCl + NaOH → H2O + NaCl
►HBr + KOH → H2O + KBr
Acid-Base Biochemistry
Definitions
►Limitations of Arrhenius
►The Arrhenius definition does not explain why some substances,
such as common baking soda (NaHCO3), can act like a base even
though they do not contain hydroxide ions.
Acid-Base Biochemistry
Definitions
Brǿnsted-Lowry 1923
An acid is any chemical species that donates a proton to
another chemical species (proton donor)
A base is any chemical species that accepts a proton
from another chemical species (Proton acceptor)
Acid-Base Biochemistry
Definitions
►The Brønsted-Lowry definition of acids is very similar to the
Arrhenius definition, any substance that can donate a hydrogen ion is
an acid (under the Brønsted definition, acids are often referred to as
proton donors because an H+ ion, hydrogen minus its electron, is
simply a proton).
Acid-Base Biochemistry
Definitions
►The Brønsted definition of bases is, however, quite different from the
Arrhenius definition. Arrhenius base releases hydroxyl ions whereas
the Brønsted base is defined as any substance that can accept a
hydrogen ion.
Acid-Base Biochemistry
Definitions
►The Brønsted-Lowry definition includes the Arrhenius bases so
►NaOH and KOH, as we saw above, would still be considered bases
because they can accept an H+ from an acid to form water.
►But it extends the concept of a base and introduces the concept of
conjugate acid-base pairs
Acid-Base Biochemistry
Definitions
The removal of a proton (hydrogen ion) from an acid produces its
conjugate base, which is the acid with a hydrogen ion removed, and
the reception of a proton by a base produces its conjugate acid,
which is the base with a hydrogen ion added
Acid-Base Biochemistry
Definitions
►The Brønsted-Lowry definition also explains why substances that do
not contain OH- ions can act like bases.
►Baking soda (NaHCO3), for example, acts like a base by accepting a
hydrogen ion from an acid as illustrated below:
►Acid Base Salt
►HCl + NaHCO3 → H2CO3 + NaCl
Acid-Base Biochemistry
Definitions
►Lewis definition 1923
►A substance that can accept an electron pair from a base; thus, AlCl3,
BF3, and SO3 are acids.
►The Lewis theory defines an acid as a species that can accept an
electron pair from another atom, and a base as a species that can
donate an electron pair to complete the valence shell of another
atom
Acid-Base Biochemistry
Definitions
pH
Under the Brønsted-Lowry definition, both acids and bases are
related to the concentration of hydrogen ions present. Acids increase
the concentration of hydrogen ions, while bases decrease the
concentration of hydrogen ions (by accepting them). The acidity or
basicity of something therefore can be measured by its hydrogen ion
concentration.
Acid-Base Biochemistry
Definitions
►In 1909, the Danish biochemist Sören Sörensen invented the pH
scale for measuring acidity. The pH scale is described by the formula:
►pH = -log [H+]
►Note: concentration is commonly abbreviated by using square
brackets, thus [H+] = hydrogen ion concentration. When measuring
pH, [H+] is in units of moles of H+ per litre of solution.
• If [H+] = 1 x 10 -7 M
• Then pH = 7
Acid-Base Equilibria
Dissociation of Weak Electrolytes
Consider a weak acid, HA
• The acid dissociation constant is given by:
• HA  H+ + A-
• Ka = [ H + ] [ A - ]
____________________
[HA]
The Henderson-Hasselbalch Equation
• For any acid HA, the relationship between the pKa, the
concentrations existing at equilibrium and the
solution pH is given by:
• pH = pKa + log10
[ A¯ ]
¯¯¯¯¯¯¯¯¯¯
[HA]
Consider the Dissociation of Acetic Acid
Assume 0.1 eq base has been added to a fully
protonated solution of acetic acid
• The Henderson-Hasselbalch equation can be
used to calculate the pH of the solution:
With 0.1 eq OH¯ added:
• pH = pKa + log10
[0.1 ]
¯¯¯¯¯¯¯¯¯¯
[0.9]
• pH = 4.76 + (-0.95)
• pH = 3.81
Consider the Dissociation of Acetic Acid
Another case....
• What happens if exactly 0.5 eq of base is
added to a solution of the fully protonated
acetic acid?
• With 0.5 eq OH¯ added:
• pH = pKa + log10
[0.5 ]
¯¯¯¯¯¯¯¯¯¯
[0.5]
• pH = 4.76 + 0
• pH = 4.76 = pKa
Consider the Dissociation of Acetic Acid
A final case to consider....
• What is the pH if 0.9 eq of base is added to a
solution of the fully protonated acid?
• With 0.9 eq OH¯ added:
• pH = pKa + log10
[0.9 ]
¯¯¯¯¯¯¯¯¯¯
[0.1]
• pH = 4.76 + 0.95
• pH = 5.71
Acid-Base Biochemistry
Physiology
►What is Physiological pH range?
Acid-Base Biochemistry
Physiology
►Extracellular fluid
pH 7.35 – 7.46 (35-45 nmol/L)
Does this apply to whole body
?any different pH ranges elsewhere
Acid-Base Biochemistry
Physiology
More extreme/variable pH range
Digestive tract
Gastric Juice 1.0-3.0
Pancreatic Juice 8.0-8.3
Intercellular organelles
Lysosomal pH 4-5
Digestive and lysosomal enzymes function optimally at these
pH ranges
Acid-Base Biochemistry
Physiology
►WHAT ARE THE SOURCES OF ACID IN THE BODY?
Acid-Base Biochemistry
Physiology
►Sources of acid
• Metabolism of food
• Metabolism of drugs
• Inborn errors of metabolism
Acid-Base Biochemistry
Physiology
►Acid production from metabolism of food
• Sulphuric acid from metabolism of sulphur-containing amino acids of proteins
• Lactic acid from sugars
• Ketoacids from fats
Acid-Base Biochemistry
Physiology
►Acid production from metabolism of drugs
• Direct metabolism of drug to more acidic compound eg salicylates urates etc
• Induction of enzymes which metabolise other compounds (endogenous or
exogenous) to acids
Acid-Base Biochemistry
Physiology
►Inborn errors of metabolism
• Organic acid disorders
• Lactic acidosis
Next week’s Class ….
• Read on Buffer solutions
• Homeostasis of hydrogen ions
• Buffering systems in blood

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LECTURE II Acids and Bases.ppt

  • 2. Acid-Base Biochemistry Definitions Arrhenius ►Arrhenius suggested that acids are compounds that contain hydrogen and can dissolve in water to release hydrogen ions into solution. For example, hydrochloric acid (HCl) dissolves in water as follows: H2O HCl (g) → H+ (aq) + Cl- (aq)
  • 3. Acid-Base Biochemistry Definitions ►Arrhenius defined bases as substances that dissolve in water to release hydroxide ions (OH-) into solution. For example, a typical base according to the Arrhenius definition is sodium hydroxide (NaOH): H2O NaOH (s) → Na+ (aq) + OH- (aq)
  • 4. Acid-Base Biochemistry Definitions ►The Arrhenius definition of acids and bases explains a number of things. Arrhenius's theory explains why all acids have similar properties to each other (and, conversely, why all bases are similar): because all acids release H+ into solution (and all bases release OH-).
  • 5. Acid-Base Biochemistry Definitions ►The Arrhenius definition also explains Boyle's observation that acids and bases counteract each other. This idea, that a base can make an acid weaker, and vice versa, is called neutralization.
  • 6. Acid-Base Biochemistry Definitions ►Neutralization: As you can see from the equations, acids release H+ into solution and bases release OH-. If we were to mix an acid and base together, the H+ ion would combine with the OH- ion to make the molecule H2O, or plain water: ►H+ (aq) + OH- (aq) → H2O
  • 7. Acid-Base Biochemistry Definitions ►The neutralization reaction of an acid with a base will always produce water and a salt, as shown below: ►Acid Base Water Salt ►HCl + NaOH → H2O + NaCl ►HBr + KOH → H2O + KBr
  • 8. Acid-Base Biochemistry Definitions ►Limitations of Arrhenius ►The Arrhenius definition does not explain why some substances, such as common baking soda (NaHCO3), can act like a base even though they do not contain hydroxide ions.
  • 9. Acid-Base Biochemistry Definitions Brǿnsted-Lowry 1923 An acid is any chemical species that donates a proton to another chemical species (proton donor) A base is any chemical species that accepts a proton from another chemical species (Proton acceptor)
  • 10. Acid-Base Biochemistry Definitions ►The Brønsted-Lowry definition of acids is very similar to the Arrhenius definition, any substance that can donate a hydrogen ion is an acid (under the Brønsted definition, acids are often referred to as proton donors because an H+ ion, hydrogen minus its electron, is simply a proton).
  • 11. Acid-Base Biochemistry Definitions ►The Brønsted definition of bases is, however, quite different from the Arrhenius definition. Arrhenius base releases hydroxyl ions whereas the Brønsted base is defined as any substance that can accept a hydrogen ion.
  • 12. Acid-Base Biochemistry Definitions ►The Brønsted-Lowry definition includes the Arrhenius bases so ►NaOH and KOH, as we saw above, would still be considered bases because they can accept an H+ from an acid to form water. ►But it extends the concept of a base and introduces the concept of conjugate acid-base pairs
  • 13. Acid-Base Biochemistry Definitions The removal of a proton (hydrogen ion) from an acid produces its conjugate base, which is the acid with a hydrogen ion removed, and the reception of a proton by a base produces its conjugate acid, which is the base with a hydrogen ion added
  • 14. Acid-Base Biochemistry Definitions ►The Brønsted-Lowry definition also explains why substances that do not contain OH- ions can act like bases. ►Baking soda (NaHCO3), for example, acts like a base by accepting a hydrogen ion from an acid as illustrated below: ►Acid Base Salt ►HCl + NaHCO3 → H2CO3 + NaCl
  • 15. Acid-Base Biochemistry Definitions ►Lewis definition 1923 ►A substance that can accept an electron pair from a base; thus, AlCl3, BF3, and SO3 are acids. ►The Lewis theory defines an acid as a species that can accept an electron pair from another atom, and a base as a species that can donate an electron pair to complete the valence shell of another atom
  • 16. Acid-Base Biochemistry Definitions pH Under the Brønsted-Lowry definition, both acids and bases are related to the concentration of hydrogen ions present. Acids increase the concentration of hydrogen ions, while bases decrease the concentration of hydrogen ions (by accepting them). The acidity or basicity of something therefore can be measured by its hydrogen ion concentration.
  • 17. Acid-Base Biochemistry Definitions ►In 1909, the Danish biochemist Sören Sörensen invented the pH scale for measuring acidity. The pH scale is described by the formula: ►pH = -log [H+] ►Note: concentration is commonly abbreviated by using square brackets, thus [H+] = hydrogen ion concentration. When measuring pH, [H+] is in units of moles of H+ per litre of solution. • If [H+] = 1 x 10 -7 M • Then pH = 7
  • 19.
  • 20.
  • 21. Dissociation of Weak Electrolytes Consider a weak acid, HA • The acid dissociation constant is given by: • HA  H+ + A- • Ka = [ H + ] [ A - ] ____________________ [HA]
  • 22. The Henderson-Hasselbalch Equation • For any acid HA, the relationship between the pKa, the concentrations existing at equilibrium and the solution pH is given by: • pH = pKa + log10 [ A¯ ] ¯¯¯¯¯¯¯¯¯¯ [HA]
  • 23.
  • 24. Consider the Dissociation of Acetic Acid Assume 0.1 eq base has been added to a fully protonated solution of acetic acid • The Henderson-Hasselbalch equation can be used to calculate the pH of the solution: With 0.1 eq OH¯ added: • pH = pKa + log10 [0.1 ] ¯¯¯¯¯¯¯¯¯¯ [0.9] • pH = 4.76 + (-0.95) • pH = 3.81
  • 25. Consider the Dissociation of Acetic Acid Another case.... • What happens if exactly 0.5 eq of base is added to a solution of the fully protonated acetic acid? • With 0.5 eq OH¯ added: • pH = pKa + log10 [0.5 ] ¯¯¯¯¯¯¯¯¯¯ [0.5] • pH = 4.76 + 0 • pH = 4.76 = pKa
  • 26. Consider the Dissociation of Acetic Acid A final case to consider.... • What is the pH if 0.9 eq of base is added to a solution of the fully protonated acid? • With 0.9 eq OH¯ added: • pH = pKa + log10 [0.9 ] ¯¯¯¯¯¯¯¯¯¯ [0.1] • pH = 4.76 + 0.95 • pH = 5.71
  • 28. Acid-Base Biochemistry Physiology ►Extracellular fluid pH 7.35 – 7.46 (35-45 nmol/L) Does this apply to whole body ?any different pH ranges elsewhere
  • 29. Acid-Base Biochemistry Physiology More extreme/variable pH range Digestive tract Gastric Juice 1.0-3.0 Pancreatic Juice 8.0-8.3 Intercellular organelles Lysosomal pH 4-5 Digestive and lysosomal enzymes function optimally at these pH ranges
  • 30. Acid-Base Biochemistry Physiology ►WHAT ARE THE SOURCES OF ACID IN THE BODY?
  • 31. Acid-Base Biochemistry Physiology ►Sources of acid • Metabolism of food • Metabolism of drugs • Inborn errors of metabolism
  • 32. Acid-Base Biochemistry Physiology ►Acid production from metabolism of food • Sulphuric acid from metabolism of sulphur-containing amino acids of proteins • Lactic acid from sugars • Ketoacids from fats
  • 33. Acid-Base Biochemistry Physiology ►Acid production from metabolism of drugs • Direct metabolism of drug to more acidic compound eg salicylates urates etc • Induction of enzymes which metabolise other compounds (endogenous or exogenous) to acids
  • 34. Acid-Base Biochemistry Physiology ►Inborn errors of metabolism • Organic acid disorders • Lactic acidosis
  • 35. Next week’s Class …. • Read on Buffer solutions • Homeostasis of hydrogen ions • Buffering systems in blood