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International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056
Volume: 07 Issue: 03 | Mar 2020 www.irjet.net p-ISSN: 2395-0072
© 2020, IRJET | Impact Factor value: 7.34 | ISO 9001:2008 Certified Journal | Page 5403
Accuracy Prediction and Classification using Machine Learning
Techniques for Sepsis
Dr. R. Kavitha 1, Ms. D. Celshia 2, Ms. R. Krishnapriya 3, Ms. S. Harini 4
1Professor, Department of Information Technology Velammal College of Engineering and Technology Madurai,
Tamilnadu, India.
2,3,4 Student, , Department of Information Technology Velammal College of Engineering and Technology Madurai,
Tamilnadu, India
---------------------------------------------------------------------***----------------------------------------------------------------------
Abstract - Sepsis is estimated to affect more than 30 million
people worldwide every year, potentially leading to 6 million
deaths. It is estimated that 3 million newborns and 1.2 million
children suffer from sepsis globally every year. One in ten
deaths associated with pregnancy and childbirth is due to
maternal sepsis with over 95% of deaths due to maternal
sepsis occurring in low- and middle-income countries. Early
prediction of sepsis is a challenging problem. The aim of this
study is to develop an artificial intelligence-based prediction
system to control sepsis-associated hospital mortality. The
concept of neural network algorithm is used to predict the
onset of Sepsis as early as possible using the clinical data of
ICU patients aiding in the reduction of hospitalmortalityratio.
Key Words: Sepsis, Artificial Intelligence, Clinical Data,
Prediction, Machine learning, Neural Network.
1. INTRODUCTION
Sepsis is a medical complication not a disease. It is a life-
threatening organ dysfunction[3]. A life-threatening organ
dysfunction caused by a dysregulated host response to
infection. It has a high mortality rate .Sepsis treatment
resulted in an estimated $27 billion or 5.2 percent of the
total cost for all hospitalizations making it one of the most
expensive treatments. Early detection of sepsis has the
potential to reduce mortality by facilitating timely
implementation of evidence-based interventions [1].
According to World Health Organization (WHO) data,
27,000,000 cases of sepsis develop annually[3]. Predictive
models have been used to improve care in critical care
settings, such as the Intensive Care Unit (ICU), and can
potentially be used for earlier detection of patients at risk of
becoming septic, allowing for earlier treatment [4].
A variety of symptoms are considered for the prediction
process earlysymptomsincludefeverandfeelingunwell,faint,
weak, or confused., heart rate and breathing are faster than
usual. If it's not treated, sepsis can harm the organs, make it
hard to breathe, and gives diarrhea, nausea, and mess up
thinking capacity. It's rare, but sepsis can happen during
pregnancy shortly after pregnancy due to infection.
Early prediction of sepsis is a challenging problem. The aim
of this study is to develop an Machine learning basedsystem
which reduces sepsis-associated hospital mortality.
2. DATASET
The data consists of a combinationofvital signattributes,lab
values, and static patient descriptions. In particular,thedata
contained 40 clinical variables: 8 vital sign variables, 26
laboratory variables, and 6 demographic variables; Table 1
describes these variables.
1 HR - Heart rate (beats per minute)
2 O2Sat - Pulse oximetry (%)
3 Temp - Temperature (deg C)
4 SBP - Systolic BP (mm Hg)
5 MAP - Mean arterial pressure (mm Hg)
6 DBP - Diastolic BP (mm Hg)
7 Resp- Respiration rate (breaths per minute)
8 EtCO2 - End tidal carbon dioxide (mm Hg)
9 BaseExcess - Excess bicarbonate (mmol/L)
10 HCO3 - Bicarbonate (mmol/L)
11 FiO2 - Fraction of inspired oxygen (%)
12 pH – pH
13 PaCO2 - Partial pressure of carbon dioxide from
arterial blood (mm Hg)
14 SaO2 - Oxygen saturation fromarterial blood(%)
15 AST - Aspartate transaminase (IU/L)
16 BUN - Blood urea nitrogen (mg/dL)
17 Alkalinephos - Alkaline phosphatase (IU/L)
18 Calcium - Calcium (mg/dL)
19 Chloride - Chloride (mmol/L)
20 Creatinine - Creatinine (mg/dL)
21 Bilirubin direct - Direct bilirubin (mg/dL)
22 Glucose - Serum glucose (mg/dL)
23 Lactate - Lactic acid (mg/dL)
24 Magnesium - Magnesium (mmol/dL)
25 Phosphate - Phosphate (mg/dL)
26 Potassium -Potassiam (mmol/L)
27 Bilirubin total - Total bilirubin (mg/dL)
28 TroponinI - Troponin I (ng/mL)
29 Hct - Hematocrit (%)
30 Hgb- Hemoglobin (g/dL)
31 PTT - Partial thromboplastin time (seconds)
32 WBC - Leukocyte count (count/L)
33 Fibrinogen - Fibrinogen concentration (mg/dL)
34 Platelets - Platelet count (count/mL)
35 Age - Age (years)
36 Gender - Female (0) or male (1)
International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056
Volume: 07 Issue: 03 | Mar 2020 www.irjet.net p-ISSN: 2395-0072
© 2020, IRJET | Impact Factor value: 7.34 | ISO 9001:2008 Certified Journal | Page 5404
37 Unit1 - Administrative identifier for ICU unit
(MICU); false (0) or true (1)
38 Unit2 - Administrative identifier for ICU unit
(SICU); false (0) or true (1)
39 HospAdmTime- Time between hospital and ICU
admission (hours since ICU admission)
40 ICULOS - ICU length of stay (hours since ICU
admission)
Table 1
3. LITERATURE SURVEY
This chapter reviews already published works, found to be
relevant and related to the taken-up research problem.
A Prediction system is build usinganMLalgorithmtopredict
severe Sepsis and septic shock and evaluate impact on
clinical practice and patient outcome [1]. To assess clinician
perception of ML based EWS to predict severe sepsis.[2]
Early detection and antibiotic treatment of sepsis are also
modeled by POMDS for improving sepsis prediction for
improving sepsis outcome in times to treatment where each
hour of delayed treatment has been associated with roughly
an 4-8% increase in mortality[3] .In this paper Sepsis-3
defention was used to build 3 predictive models of sepsis in
ICU patients using Logistic model tree(LMT) ,SupportVector
Machine (SVM), Logistic Regression(LR) were used to
predict onset of sepsis in adult intensive care unit patients
using vital signs and blood culture results.[4].
A new learning strategy was proposed to boost the
performance of Kernal Extreme Learning Machine(KELM),
known as, Chaotic fruit fly optimization(CFOA) was
proposed to diagnose sepsis using patient data. [5] and
Feasibilty of utilizing CNN in the task of predicting the
suspected late onsetneonatal sepsis [6]Hierarchical analysis
of Machine Learning algorithms is also used to improve
prediction. This method could be incorporated into the
current clinical workflow as a decision support system and
provide useful information [7] Attention based RNN to
predict sepsis from multi varaiate time series of clinical lab
measurements [8] and Investigating the possibility of
predicting the clinician’s treatment towards the pre term
infants in ICU [9] Open source algorithm for early detection
of sepsis from clinical data. These Data are extracted from
the Electronic Medical Record (EMR) underwent a series of
pre-processing steps prior to formal analysis and model
development. All patient features were condensed into
hourly bins simplifying model development and testing.[10]
4. METHODOLOGY
In this study we use PNNs in order tomake predictions using
clinical data. A PNN is an implementation of a statistical
algorithm called kernel discriminant analysis in which the
operations are organized into a multilayered feed forward
network with four layers.
4.1 Input layer
The input layer contains the notes with a set of
measurements .Each neuron in the input layer represents a
predictor variables. In categorical variables,N-1neurons are
used when there are N number of categories. It standardizes
the range of the values by subtracting the medion and
dividing by the interquartile range. Then the input neurons
feed the values to each of the neurons in the hidden layer.
4.2 Pattern layer
The pattern layer consists of the Gaussian functions formed
using the given set of data points as centres. This layer
contains one neuron for each case in the training data set. It
stores the values of the predictor variables forthecasealong
with the target value. A hidden neuron computes the
Euclidian distance of the test case from the neuron’s center
point and then applies the RBF kernel function using the
sigma value.
4.3 Summation layer
The summation layer performs a sum operation of the
outputs from the second layer for each class.
4.4 Output layer
The output layer performs a vote, selecting thelargestvalue.
The associated class label is then determined.
International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056
Volume: 07 Issue: 03 | Mar 2020 www.irjet.net p-ISSN: 2395-0072
© 2020, IRJET | Impact Factor value: 7.34 | ISO 9001:2008 Certified Journal | Page 5405
5. RESULT AND DISCUSSION
In this paper the accuracy prediction andclassificationusing
Artificial Intelligence techniques for Sepsis has been
discussed. The Probabilistic Neural Network algorithm has
been used to achieve this process. Using this mechanism we
can predict the presence of sepsis on an ICU patient
efficiently.
6. CONCLUSION
In this paper we discussed the feasibility of utilizingthePNN
(probabilistic Neural Network) algorithm in the task of
predicting the disease onset as early as possible using the
vital signs of patients.
However, there are a few shortcomings with our approach
which we seek to address in our future work. First of all, it is
important to consider evaluating other methods to handle
the missing data and improve the overall efficiency
REFERENCES
[1] Heather M.Giannini, Jennifer C.Ginestra, et al: Machine
learning algorithm to predict Severe sepsisandsepticshock:
development, implementation and impact on clinical
practice, 2019;47:11.
[2] William D.Schweicker, Laurie Meadows, et al: Clinician
perception of machine learning–Basedearlywarningsystem
designed to predict severe sepsis and septic shock, 2019,
48:13
[3] R.MuratDemirer, OyaDemirer, et al: Early Prediction of
Sepsis from Clinical Data Using Artificial Intelligence, 2019.
[4] Roman Z. Wang, CatherineH.Sun, etal:PredictiveModels
of Sepsis in Adult ICU Patients, 2018.
[5] XianchuanWang, Zhiyi Wang, et al:A new effective
machine learning framework for sepsis diagnosis,2018
[6] YofeiHu, Vincent C.S. Lee , et al:An Application of
Convolutional Neural Networks for the Early Detection of
Late-onset Neonatal Sepsis,2019.
[7] Franko Van Wik, Rishikesankamaleswaran, et al:
Improving Prediction Performance Using Hierarchical
Analysis of Real-Time Data: A Sepsis Case Study, 2019
[8] Kourosh T. Baghaei, ShahramRahimi: Sepsis
prediction:An attention based interpretable approach,2019
[9] YifeiHu, Vincent .C.S.Lee, etal: Prediction of clinicians
treatment in pre term infants with suspected late onset
sepsis- An ML approach, 2018
[10]Mathew A.Reyna, Christopher S.Josef, et al:Early
prediction of sepsis using clinical data: the physionet
/computing in cardiology challenge ,2020

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IRJET - Accuracy Prediction and Classification using Machine Learning Techniques for Sepsis

  • 1. International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 07 Issue: 03 | Mar 2020 www.irjet.net p-ISSN: 2395-0072 © 2020, IRJET | Impact Factor value: 7.34 | ISO 9001:2008 Certified Journal | Page 5403 Accuracy Prediction and Classification using Machine Learning Techniques for Sepsis Dr. R. Kavitha 1, Ms. D. Celshia 2, Ms. R. Krishnapriya 3, Ms. S. Harini 4 1Professor, Department of Information Technology Velammal College of Engineering and Technology Madurai, Tamilnadu, India. 2,3,4 Student, , Department of Information Technology Velammal College of Engineering and Technology Madurai, Tamilnadu, India ---------------------------------------------------------------------***---------------------------------------------------------------------- Abstract - Sepsis is estimated to affect more than 30 million people worldwide every year, potentially leading to 6 million deaths. It is estimated that 3 million newborns and 1.2 million children suffer from sepsis globally every year. One in ten deaths associated with pregnancy and childbirth is due to maternal sepsis with over 95% of deaths due to maternal sepsis occurring in low- and middle-income countries. Early prediction of sepsis is a challenging problem. The aim of this study is to develop an artificial intelligence-based prediction system to control sepsis-associated hospital mortality. The concept of neural network algorithm is used to predict the onset of Sepsis as early as possible using the clinical data of ICU patients aiding in the reduction of hospitalmortalityratio. Key Words: Sepsis, Artificial Intelligence, Clinical Data, Prediction, Machine learning, Neural Network. 1. INTRODUCTION Sepsis is a medical complication not a disease. It is a life- threatening organ dysfunction[3]. A life-threatening organ dysfunction caused by a dysregulated host response to infection. It has a high mortality rate .Sepsis treatment resulted in an estimated $27 billion or 5.2 percent of the total cost for all hospitalizations making it one of the most expensive treatments. Early detection of sepsis has the potential to reduce mortality by facilitating timely implementation of evidence-based interventions [1]. According to World Health Organization (WHO) data, 27,000,000 cases of sepsis develop annually[3]. Predictive models have been used to improve care in critical care settings, such as the Intensive Care Unit (ICU), and can potentially be used for earlier detection of patients at risk of becoming septic, allowing for earlier treatment [4]. A variety of symptoms are considered for the prediction process earlysymptomsincludefeverandfeelingunwell,faint, weak, or confused., heart rate and breathing are faster than usual. If it's not treated, sepsis can harm the organs, make it hard to breathe, and gives diarrhea, nausea, and mess up thinking capacity. It's rare, but sepsis can happen during pregnancy shortly after pregnancy due to infection. Early prediction of sepsis is a challenging problem. The aim of this study is to develop an Machine learning basedsystem which reduces sepsis-associated hospital mortality. 2. DATASET The data consists of a combinationofvital signattributes,lab values, and static patient descriptions. In particular,thedata contained 40 clinical variables: 8 vital sign variables, 26 laboratory variables, and 6 demographic variables; Table 1 describes these variables. 1 HR - Heart rate (beats per minute) 2 O2Sat - Pulse oximetry (%) 3 Temp - Temperature (deg C) 4 SBP - Systolic BP (mm Hg) 5 MAP - Mean arterial pressure (mm Hg) 6 DBP - Diastolic BP (mm Hg) 7 Resp- Respiration rate (breaths per minute) 8 EtCO2 - End tidal carbon dioxide (mm Hg) 9 BaseExcess - Excess bicarbonate (mmol/L) 10 HCO3 - Bicarbonate (mmol/L) 11 FiO2 - Fraction of inspired oxygen (%) 12 pH – pH 13 PaCO2 - Partial pressure of carbon dioxide from arterial blood (mm Hg) 14 SaO2 - Oxygen saturation fromarterial blood(%) 15 AST - Aspartate transaminase (IU/L) 16 BUN - Blood urea nitrogen (mg/dL) 17 Alkalinephos - Alkaline phosphatase (IU/L) 18 Calcium - Calcium (mg/dL) 19 Chloride - Chloride (mmol/L) 20 Creatinine - Creatinine (mg/dL) 21 Bilirubin direct - Direct bilirubin (mg/dL) 22 Glucose - Serum glucose (mg/dL) 23 Lactate - Lactic acid (mg/dL) 24 Magnesium - Magnesium (mmol/dL) 25 Phosphate - Phosphate (mg/dL) 26 Potassium -Potassiam (mmol/L) 27 Bilirubin total - Total bilirubin (mg/dL) 28 TroponinI - Troponin I (ng/mL) 29 Hct - Hematocrit (%) 30 Hgb- Hemoglobin (g/dL) 31 PTT - Partial thromboplastin time (seconds) 32 WBC - Leukocyte count (count/L) 33 Fibrinogen - Fibrinogen concentration (mg/dL) 34 Platelets - Platelet count (count/mL) 35 Age - Age (years) 36 Gender - Female (0) or male (1)
  • 2. International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 07 Issue: 03 | Mar 2020 www.irjet.net p-ISSN: 2395-0072 © 2020, IRJET | Impact Factor value: 7.34 | ISO 9001:2008 Certified Journal | Page 5404 37 Unit1 - Administrative identifier for ICU unit (MICU); false (0) or true (1) 38 Unit2 - Administrative identifier for ICU unit (SICU); false (0) or true (1) 39 HospAdmTime- Time between hospital and ICU admission (hours since ICU admission) 40 ICULOS - ICU length of stay (hours since ICU admission) Table 1 3. LITERATURE SURVEY This chapter reviews already published works, found to be relevant and related to the taken-up research problem. A Prediction system is build usinganMLalgorithmtopredict severe Sepsis and septic shock and evaluate impact on clinical practice and patient outcome [1]. To assess clinician perception of ML based EWS to predict severe sepsis.[2] Early detection and antibiotic treatment of sepsis are also modeled by POMDS for improving sepsis prediction for improving sepsis outcome in times to treatment where each hour of delayed treatment has been associated with roughly an 4-8% increase in mortality[3] .In this paper Sepsis-3 defention was used to build 3 predictive models of sepsis in ICU patients using Logistic model tree(LMT) ,SupportVector Machine (SVM), Logistic Regression(LR) were used to predict onset of sepsis in adult intensive care unit patients using vital signs and blood culture results.[4]. A new learning strategy was proposed to boost the performance of Kernal Extreme Learning Machine(KELM), known as, Chaotic fruit fly optimization(CFOA) was proposed to diagnose sepsis using patient data. [5] and Feasibilty of utilizing CNN in the task of predicting the suspected late onsetneonatal sepsis [6]Hierarchical analysis of Machine Learning algorithms is also used to improve prediction. This method could be incorporated into the current clinical workflow as a decision support system and provide useful information [7] Attention based RNN to predict sepsis from multi varaiate time series of clinical lab measurements [8] and Investigating the possibility of predicting the clinician’s treatment towards the pre term infants in ICU [9] Open source algorithm for early detection of sepsis from clinical data. These Data are extracted from the Electronic Medical Record (EMR) underwent a series of pre-processing steps prior to formal analysis and model development. All patient features were condensed into hourly bins simplifying model development and testing.[10] 4. METHODOLOGY In this study we use PNNs in order tomake predictions using clinical data. A PNN is an implementation of a statistical algorithm called kernel discriminant analysis in which the operations are organized into a multilayered feed forward network with four layers. 4.1 Input layer The input layer contains the notes with a set of measurements .Each neuron in the input layer represents a predictor variables. In categorical variables,N-1neurons are used when there are N number of categories. It standardizes the range of the values by subtracting the medion and dividing by the interquartile range. Then the input neurons feed the values to each of the neurons in the hidden layer. 4.2 Pattern layer The pattern layer consists of the Gaussian functions formed using the given set of data points as centres. This layer contains one neuron for each case in the training data set. It stores the values of the predictor variables forthecasealong with the target value. A hidden neuron computes the Euclidian distance of the test case from the neuron’s center point and then applies the RBF kernel function using the sigma value. 4.3 Summation layer The summation layer performs a sum operation of the outputs from the second layer for each class. 4.4 Output layer The output layer performs a vote, selecting thelargestvalue. The associated class label is then determined.
  • 3. International Research Journal of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 07 Issue: 03 | Mar 2020 www.irjet.net p-ISSN: 2395-0072 © 2020, IRJET | Impact Factor value: 7.34 | ISO 9001:2008 Certified Journal | Page 5405 5. RESULT AND DISCUSSION In this paper the accuracy prediction andclassificationusing Artificial Intelligence techniques for Sepsis has been discussed. The Probabilistic Neural Network algorithm has been used to achieve this process. Using this mechanism we can predict the presence of sepsis on an ICU patient efficiently. 6. CONCLUSION In this paper we discussed the feasibility of utilizingthePNN (probabilistic Neural Network) algorithm in the task of predicting the disease onset as early as possible using the vital signs of patients. However, there are a few shortcomings with our approach which we seek to address in our future work. First of all, it is important to consider evaluating other methods to handle the missing data and improve the overall efficiency REFERENCES [1] Heather M.Giannini, Jennifer C.Ginestra, et al: Machine learning algorithm to predict Severe sepsisandsepticshock: development, implementation and impact on clinical practice, 2019;47:11. [2] William D.Schweicker, Laurie Meadows, et al: Clinician perception of machine learning–Basedearlywarningsystem designed to predict severe sepsis and septic shock, 2019, 48:13 [3] R.MuratDemirer, OyaDemirer, et al: Early Prediction of Sepsis from Clinical Data Using Artificial Intelligence, 2019. [4] Roman Z. Wang, CatherineH.Sun, etal:PredictiveModels of Sepsis in Adult ICU Patients, 2018. [5] XianchuanWang, Zhiyi Wang, et al:A new effective machine learning framework for sepsis diagnosis,2018 [6] YofeiHu, Vincent C.S. Lee , et al:An Application of Convolutional Neural Networks for the Early Detection of Late-onset Neonatal Sepsis,2019. [7] Franko Van Wik, Rishikesankamaleswaran, et al: Improving Prediction Performance Using Hierarchical Analysis of Real-Time Data: A Sepsis Case Study, 2019 [8] Kourosh T. Baghaei, ShahramRahimi: Sepsis prediction:An attention based interpretable approach,2019 [9] YifeiHu, Vincent .C.S.Lee, etal: Prediction of clinicians treatment in pre term infants with suspected late onset sepsis- An ML approach, 2018 [10]Mathew A.Reyna, Christopher S.Josef, et al:Early prediction of sepsis using clinical data: the physionet /computing in cardiology challenge ,2020