1. DNA cloning is the process of making multiple copies of a piece of DNA by inserting it into a plasmid and using bacteria to replicate the plasmid, thereby producing many copies of the DNA fragment.
2. The DNA fragment of interest is inserted into a plasmid using enzymes that cut and join DNA fragments. The plasmid is then introduced into bacteria which replicate, making many copies of the plasmid and DNA insert.
3. DNA cloning is used to mass produce DNA or proteins, such as using E. coli bacteria to produce human insulin after inserting the human insulin gene into a plasmid. The bacteria then act as "factories" to produce large quantities of the protein.
Two approaches (clone by clone & whole genome shotgun).
Types of DNA sequencing ( 1st, next and 3rd).
Crop genomes sequenced . (Example :Arabidopsis,Rice, Pigeon pea)
DNA library is a collection of DNA, three types of recombinant DNA libraries are present
1) Genomic library
2) Chromosomal library
3) Complementary DNA library
Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells
Two approaches (clone by clone & whole genome shotgun).
Types of DNA sequencing ( 1st, next and 3rd).
Crop genomes sequenced . (Example :Arabidopsis,Rice, Pigeon pea)
DNA library is a collection of DNA, three types of recombinant DNA libraries are present
1) Genomic library
2) Chromosomal library
3) Complementary DNA library
Comparative genomic hybridization is a molecular cytogenetic method for analysing copy number variations (CNVs) relative to ploidy level in the DNA of a test sample compared to a reference sample, without the need for culturing cells
DNA sequencing is a laboratory technique used to determine the exact sequence of bases (A, C, G, and T) in a DNA molecule. The DNA base sequence carries the information a cell needs to assemble protein and RNA molecules. DNA sequence information is important to scientists investigating the functions of genes.
In medicine, DNA sequencing is used for a range of purposes, including diagnosis and treatment of diseases. In general, sequencing allows health care practitioners to determine if a gene or the region that regulates a gene contains changes, called variants or mutations, that are linked to a disorder.
A micro-array is a tool for analyzing gene expression that consists of a small membrane or glass slide containing samples of many genes arranged in a regular pattern.
This was made by me while I was in Masters. I have made few animations. I hope it makes understanding better.
The content is made by searching through internet and referencing books. I do not claim any content in whole presentation except the animations made on the subject.
"SNP and STR analysis using NGS
Niels Morling, MD DMSc
Professor of Forensic Genetics
Chairman & Director
Department of Forensic Medicine
Faculty of Health and Medical Sciences
University of Copenhagen
Denmark"
DNA microarrays
– DNA molecules printed at high density used to determine
the level of RNA or DNA in a sample.
– Can be thought of a “reverse Northern blots”
Data Management for Quantitative Biology - Data sources (Next generation tech...QBiC_Tue
Introduction to next generation sequencing (NGS); NGS data; data management of NGS data; third generation sequencing; NGS pipelines; NGS experimental design
DNA sequencing is a laboratory technique used to determine the exact sequence of bases (A, C, G, and T) in a DNA molecule. The DNA base sequence carries the information a cell needs to assemble protein and RNA molecules. DNA sequence information is important to scientists investigating the functions of genes.
In medicine, DNA sequencing is used for a range of purposes, including diagnosis and treatment of diseases. In general, sequencing allows health care practitioners to determine if a gene or the region that regulates a gene contains changes, called variants or mutations, that are linked to a disorder.
A micro-array is a tool for analyzing gene expression that consists of a small membrane or glass slide containing samples of many genes arranged in a regular pattern.
This was made by me while I was in Masters. I have made few animations. I hope it makes understanding better.
The content is made by searching through internet and referencing books. I do not claim any content in whole presentation except the animations made on the subject.
"SNP and STR analysis using NGS
Niels Morling, MD DMSc
Professor of Forensic Genetics
Chairman & Director
Department of Forensic Medicine
Faculty of Health and Medical Sciences
University of Copenhagen
Denmark"
DNA microarrays
– DNA molecules printed at high density used to determine
the level of RNA or DNA in a sample.
– Can be thought of a “reverse Northern blots”
Data Management for Quantitative Biology - Data sources (Next generation tech...QBiC_Tue
Introduction to next generation sequencing (NGS); NGS data; data management of NGS data; third generation sequencing; NGS pipelines; NGS experimental design
DNA sequencing refers to the general laboratory technique for determining the exact sequence of nucleotides, or bases, in a DNA molecule. The sequence of the bases (often referred to by the first letters of their chemical names: A, T, C, and G) encodes the biological information that cells use to develop and operate. Establishing the sequence of DNA is key to understanding the function of genes and other parts of the genome. There are now several different methods available for DNA sequencing, each with its own characteristics, and the development of additional methods represents an active area of genomics research.
Model Attribute Check Company Auto PropertyCeline George
In Odoo, the multi-company feature allows you to manage multiple companies within a single Odoo database instance. Each company can have its own configurations while still sharing common resources such as products, customers, and suppliers.
How to Make a Field invisible in Odoo 17Celine George
It is possible to hide or invisible some fields in odoo. Commonly using “invisible” attribute in the field definition to invisible the fields. This slide will show how to make a field invisible in odoo 17.
Read| The latest issue of The Challenger is here! We are thrilled to announce that our school paper has qualified for the NATIONAL SCHOOLS PRESS CONFERENCE (NSPC) 2024. Thank you for your unwavering support and trust. Dive into the stories that made us stand out!
June 3, 2024 Anti-Semitism Letter Sent to MIT President Kornbluth and MIT Cor...Levi Shapiro
Letter from the Congress of the United States regarding Anti-Semitism sent June 3rd to MIT President Sally Kornbluth, MIT Corp Chair, Mark Gorenberg
Dear Dr. Kornbluth and Mr. Gorenberg,
The US House of Representatives is deeply concerned by ongoing and pervasive acts of antisemitic
harassment and intimidation at the Massachusetts Institute of Technology (MIT). Failing to act decisively to ensure a safe learning environment for all students would be a grave dereliction of your responsibilities as President of MIT and Chair of the MIT Corporation.
This Congress will not stand idly by and allow an environment hostile to Jewish students to persist. The House believes that your institution is in violation of Title VI of the Civil Rights Act, and the inability or
unwillingness to rectify this violation through action requires accountability.
Postsecondary education is a unique opportunity for students to learn and have their ideas and beliefs challenged. However, universities receiving hundreds of millions of federal funds annually have denied
students that opportunity and have been hijacked to become venues for the promotion of terrorism, antisemitic harassment and intimidation, unlawful encampments, and in some cases, assaults and riots.
The House of Representatives will not countenance the use of federal funds to indoctrinate students into hateful, antisemitic, anti-American supporters of terrorism. Investigations into campus antisemitism by the Committee on Education and the Workforce and the Committee on Ways and Means have been expanded into a Congress-wide probe across all relevant jurisdictions to address this national crisis. The undersigned Committees will conduct oversight into the use of federal funds at MIT and its learning environment under authorities granted to each Committee.
• The Committee on Education and the Workforce has been investigating your institution since December 7, 2023. The Committee has broad jurisdiction over postsecondary education, including its compliance with Title VI of the Civil Rights Act, campus safety concerns over disruptions to the learning environment, and the awarding of federal student aid under the Higher Education Act.
• The Committee on Oversight and Accountability is investigating the sources of funding and other support flowing to groups espousing pro-Hamas propaganda and engaged in antisemitic harassment and intimidation of students. The Committee on Oversight and Accountability is the principal oversight committee of the US House of Representatives and has broad authority to investigate “any matter” at “any time” under House Rule X.
• The Committee on Ways and Means has been investigating several universities since November 15, 2023, when the Committee held a hearing entitled From Ivory Towers to Dark Corners: Investigating the Nexus Between Antisemitism, Tax-Exempt Universities, and Terror Financing. The Committee followed the hearing with letters to those institutions on January 10, 202
Normal Labour/ Stages of Labour/ Mechanism of LabourWasim Ak
Normal labor is also termed spontaneous labor, defined as the natural physiological process through which the fetus, placenta, and membranes are expelled from the uterus through the birth canal at term (37 to 42 weeks
Francesca Gottschalk - How can education support child empowerment.pptxEduSkills OECD
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Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdfTechSoup
In this webinar you will learn how your organization can access TechSoup's wide variety of product discount and donation programs. From hardware to software, we'll give you a tour of the tools available to help your nonprofit with productivity, collaboration, financial management, donor tracking, security, and more.
Macroeconomics- Movie Location
This will be used as part of your Personal Professional Portfolio once graded.
Objective:
Prepare a presentation or a paper using research, basic comparative analysis, data organization and application of economic information. You will make an informed assessment of an economic climate outside of the United States to accomplish an entertainment industry objective.
1. DNA cloning
isthe processof makingmultiple,identical copiesof aparticularpiece of DNA.Ina typical DNA
cloningprocedure,the gene orotherDNA fragmentof interest(perhapsagene fora medically
importanthumanprotein) isfirstinsertedintoacircularpiece of DNA calleda plasmid.The insertion
isdone usingenzymesthat“cut andpaste” DNA,andit producesa molecule of recombinantDNA,or
DNA assembledoutof fragmentsfrommultiple sources.
A circularpiece of plasmidDNA hasoverhangsonitsendsthat match those of a gene fragment.The
plasmidandgene fragmentare joinedtogethertoproduce a gene-containingplasmid.Thisgene-
containingplasmidisanexample of recombinantDNA,oraDNA molecule assembledfromDNA
frommultiple
Next,the recombinantplasmidisintroducedintobacteria.Bacteriacarryingthe plasmidare selected
and grownup.As theyreproduce,theyreplicatethe plasmidandpassiton to theiroffspring,making
copiesof the DNA it contains.
What isthe pointof makingmanycopies of a DNA sequence inaplasmid?Insome cases,we need
lotsof DNA copiestoconduct experimentsorbuildnew plasmids.Inothercases,the piece of DNA
encodesauseful protein,andthe bacteriaare usedas“factories”to make the protein.Forinstance,
the humaninsulingene isexpressedinE.coli bacteriato make insulinusedbydiabetics.
Steps of DNA cloning
DNA cloningisusedformany purposes.Asanexample,let'ssee how DNA cloningcanbe usedto
synthesize aprotein(suchashumaninsulin) in bacteria.The basicstepsare:
1. Cut openthe plasmidand"paste"inthe gene.Thisprocessreliesonrestrictionenzymes(which
cut DNA) and DNA ligase (whichjoinsDNA).
2. Insertthe plasmidintobacteria.Use antibioticselectiontoidentifythe bacteriathattookup the
plasmid.
3. Grow up lotsof plasmid-carryingbacteriaanduse themas"factories"tomake the protein.
Harvestthe proteinfromthe bacteriaand purifyit.
Dolly the Sheep
Dollythe sheep,asthe firstmammal to be clonedfroman adultcell,isbyfar the world'smost
famousclone.However,cloninghasexistedinnature since the dawnof life.Fromasexual bacteriato
‘virginbirths’inaphids,clonesare all aroundusandare fundamentallynodifferenttoother
organisms.A clone hasthe same DNA sequence asitsparentand sotheyare geneticallyidentical.
Several cloneshadbeenproducedinthe labbefore Dolly,includingfrogs,mice,andcows,whichhad
all beenclonedfromthe DNA fromembryos.Dollywasremarkable inbeingthe firstmammal tobe
clonedfroman adultcell.Thiswasa major scientificachievementasitdemonstratedthatthe DNA
fromadultcells,despite havingspecialisedasone particulartype of cell,canbe usedto create an
entire organism.
To produce Dolly,scientistsusedanuddercell fromasix-year-oldFinnDorsetwhitesheep.Theyhad
to finda wayto 'reprogram' the uddercells - to keepthem alive butstopthemgrowing – which
theyachievedbyalteringthe growthmedium(the ‘soup’inwhichthe cellswere keptalive).
2. Thentheyinjectedthe cell intoanunfertilisedeggcell whichhadhaditsnucleusremoved,and
made the cellsfuse byusingelectrical pulses.The unfertilisedeggcell came fromaScottish
Blackface ewe.Whenthe researchteamhadmanagedto fuse the nucleusfromthe adultwhite
sheepcell withthe eggcell fromthe black-facedsheep,theyneededtomake sure thatthe resulting
cell woulddevelopintoanembryo.
Polymerase chain reaction (PCR)
is a commonlaboratorytechnique usedtomake manycopies(millionsorbillions!) of aparticular
regionof DNA.ThisDNA regioncanbe anythingthe experimenterisinterestedin.Forexample,it
mightbe a gene whose functionaresearcherwantstounderstand,ora geneticmarkerusedby
forensicscientiststomatchcrime scene DNA withsuspects.
Typically,the goal of PCRis to make enoughof the targetDNA regionthatit can be analyzedorused
insome otherway.For instance,DNA amplifiedbyPCRmaybe sentfor sequencing,visualizedbygel
electrophoresis,orclonedintoaplasmidforfurtherexperiments.
PCR isusedinmany areasof biologyandmedicine,includingmolecularbiologyresearch,medical
diagnostics,andevensome branchesof ecology.
Biotechnology products
•AntibioticsMedicines whichare useful againstbacterialactionsandare obtainedfromliving
organismsVaccinesWeakenedordeadmicrobesforinoculationinthe bodytoproduce immunity
againstthe infectionthatrespectivehealthymicrobe cancause
•GeneticallyModifiedOrganisms(GMO’s) Organismswithmodifiedgeneticmaterial ororganisms
withforeignDNA.Types: GeneticallyModifiedAnimals, GeneticallyModifiedBacteria,
GeneticallyModifiedPlants,GeneticallyModifiedFlowers,GeneticallyModifiedFruit
•ClonedAnimals:Animalswhichhave same characteristicsasthatof theirparentsDollysheep
•HormonesVitaminsArtificialOrgans
• ProteinsIndustrial biotechnologyhasproducedenzymesforuse inourdailylives.Alcohol
productionisone of the mostbasicapplicationsof industrialbiotechnology.Enzymesandmicrobes
are twocommontoolsusedinindustrial biotechnology. Bioplastics,made frombiopolymersare
alreadyutilizedinplasticfoodpackaging,mobilephone cases,sunglasses.Polyesterisa synthetic
polymerfiberproducedfromfossil fuel andisusedtomake clothing,blankets,carpets,andother
fabrics. Industrial Biotechnologycanpresentasignificantopportunitytodevelopmedicinesthat
have beendifficulttoproduce viaothermeansdue topurityissues.
Tissue Culture
A methodof biological researchinwhichfragmentsof tissue fromananimal orplantare transferred
to an artificial environmentin whichtheycancontinue tosurvive andfunction.The culturedtissue
may consistof a single cell,apopulationof cellsorpartof an organ.
Transformationisthe stepinthe geneticengineeringprocesswhereanew gene (transgene) is
insertedintoasingle plantcell.
There are several thingsthatmusthappencorrectlyfora cell tobe successfullytransformed:
The newgene mustbe deliveredintothe nucleusof acell andinsertintoa chromosome.
3. The cellsthat receive the newgene muststayalive.
The cellsand plantsthatcontainthe new gene mustbe easilyidentifiable(selectablemarkers).
The transformedcell mustdivide andgive rise toanentire plant.
The locationwhere the transgene insertsintothe chromosome mustnotinterfere withthe
expressionof the gene.
The newgene mustnot insertintoanexistinggene inthe chromosome thatinfluencessurvival of
the plantcell or productivityof the entire plant.
Tissue culture iswhenclustersof undifferentiatedcells,calledcallus,are grown inculture.
What is gene therapy?
Gene therapyiswhenDNA isintroducedintoapatientto treata geneticdisease.The new DNA
usuallycontainsafunctioninggene tocorrectthe effectsof adisease-causingmutation.Gene
therapyusessectionsof DNA (usuallygenes)totreator preventdisease.The DNA iscarefully
selectedtocorrectthe effectof a mutatedgene thatis causingdisease.