Fertilizer use on agricultural land contributes to both nutrient pollution of surface and ground water as well as to global climate change. Voluntary conservation programs run by the USDA encourage farmers to reduce their use of fertilizers and to adopt practices and technologies that reduce nutrient run-off, but do the funds that go into these programs have the desired effect? OLS regression analysis was used to estimate the effect of federal conservation subsidies on both the number of farmland acres treated with fertilizer and the number of farms that reported using conservation practices. The analysis uses county level data for Michigan, Illinois and Iowa from the 2007 Census of Agriculture and subsidy data obtained by the Environmental Working Group from the USDA. Conservation subsidies are found to have a significant, negative effect on the acres of farmland treated with fertilizer and a significant, positive effect on the number of farms using conservation practices. Crop insurance subsidies are also found to have a large, significant and positive effect on acres fertilized. Variables such as average farmer age, number of female operators, average farm size, number of organic acres, number of irrigated acres and number of rented acres per county are not found to be significant. This analysis has substantial implications for achieving conservation outcomes though agricultural policies because it highlights ways that production policies can work at counter purposes to the goals of conservation programs.